Wall clock time and date at job start Sat Apr 11 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46974 * 299.99882 * 3 2 1 6 6 H 1.48503 * 109.47099 * 59.99896 * 3 2 1 7 7 C 1.38813 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99914 * 163.07090 * 7 2 1 9 9 N 1.36939 * 119.99988 * 343.06726 * 7 2 1 10 10 C 1.46930 * 120.63046 * 331.85126 * 9 7 2 11 11 C 1.53195 * 108.77424 * 233.58581 * 10 9 7 12 12 C 1.53037 * 109.31217 * 305.36875 * 11 10 9 13 13 N 1.46505 * 109.45822 * 181.38789 * 12 11 10 14 14 C 1.34777 * 119.99948 * 154.96815 * 13 12 11 15 15 O 1.21283 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99704 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47022 * 180.02562 * 16 14 13 18 18 C 1.39376 * 119.49403 * 270.23062 * 17 16 14 19 19 C 1.36173 * 121.08556 * 180.28087 * 18 17 16 20 20 C 1.40370 * 119.51799 * 359.75041 * 19 18 17 21 21 C 1.40431 * 122.08110 * 179.97438 * 20 19 18 22 22 N 1.31250 * 119.88123 * 180.02562 * 21 20 19 23 23 C 1.32608 * 122.77543 * 359.97438 * 22 21 20 24 24 C 1.36175 * 121.88012 * 0.02562 * 23 22 21 25 25 C 1.40695 * 118.66554 * 359.97438 * 24 23 22 26 26 C 1.36227 * 119.49027 * 90.00465 * 17 16 14 27 27 C 1.53041 * 109.53105 * 61.37142 * 12 11 10 28 28 C 1.46921 * 120.63001 * 151.82820 * 9 7 2 29 29 H 0.97000 * 120.00085 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58365 * 113.79818 * 10 9 7 31 31 H 1.09004 * 109.70233 * 353.44637 * 10 9 7 32 32 H 1.09002 * 109.49181 * 185.41440 * 11 10 9 33 33 H 1.08999 * 109.49345 * 65.31742 * 11 10 9 34 34 H 1.09003 * 109.45624 * 301.35618 * 12 11 10 35 35 H 0.96995 * 119.99643 * 334.97247 * 13 12 11 36 36 H 1.08999 * 109.47031 * 60.00883 * 16 14 13 37 37 H 1.08998 * 109.47600 * 300.00559 * 16 14 13 38 38 H 1.07999 * 119.45906 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.23992 * 179.77526 * 19 18 17 40 40 H 1.07995 * 120.06285 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.06119 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.67099 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.25806 * 359.97438 * 26 17 16 44 44 H 1.08998 * 109.49357 * 58.57692 * 27 12 11 45 45 H 1.09000 * 109.49483 * 178.67614 * 27 12 11 46 46 H 1.08995 * 109.58962 * 246.20376 * 28 9 7 47 47 H 1.09001 * 109.58492 * 6.48782 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8121 -4.7020 1.8328 13 7 1.0397 -5.6496 2.9267 14 6 0.8357 -6.9673 2.7302 15 8 0.4642 -7.3686 1.6477 16 6 1.0704 -7.9420 3.8553 17 6 0.7732 -9.3404 3.3786 18 6 -0.5180 -9.8493 3.5071 19 6 -0.8211 -11.1104 3.0925 20 6 0.1811 -11.9103 2.5213 21 6 -0.0717 -13.2180 2.0761 22 7 0.8980 -13.9281 1.5488 23 6 2.1331 -13.4655 1.4103 24 6 2.4803 -12.2111 1.8104 25 6 1.4941 -11.3889 2.3856 26 6 1.7696 -10.0859 2.8244 27 6 2.0676 -4.6177 0.9617 28 6 1.8138 -3.6527 -0.2007 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6770 -2.6410 0.7347 31 1 0.0967 -1.3358 1.6677 32 1 -0.3831 -3.3861 3.0509 33 1 1.3472 -2.9696 2.9973 34 1 -0.0280 -5.0417 1.2270 35 1 1.3371 -5.3286 3.7923 36 1 0.4158 -7.6961 4.6914 37 1 2.1098 -7.8816 4.1776 38 1 -1.2898 -9.2348 3.9465 39 1 -1.8254 -11.4923 3.2020 40 1 -1.0622 -13.6386 2.1673 41 1 2.8850 -14.1019 0.9676 42 1 3.4924 -11.8544 1.6886 43 1 2.7648 -9.6778 2.7270 44 1 2.9023 -4.2542 1.5610 45 1 2.3046 -5.6063 0.5686 46 1 1.0403 -4.0599 -0.8517 47 1 2.7332 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859264612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:14 Heat of formation + Delta-G solvation = 30.785125 kcal Electronic energy + Delta-G solvation = -28112.919064 eV Core-core repulsion = 24260.486236 eV Total energy + Delta-G solvation = -3852.432828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.10635 -39.81961 -37.94625 -37.13105 -34.44311 -33.37061 -32.88800 -32.09347 -30.27212 -30.01765 -29.55369 -28.06820 -25.05808 -24.20651 -23.28450 -22.53825 -22.27969 -21.79323 -20.25924 -19.32472 -18.07472 -17.44669 -17.16528 -16.84087 -16.55758 -15.81086 -15.23495 -15.15564 -14.83037 -14.48753 -14.44930 -14.06784 -13.91850 -13.73956 -13.59891 -13.56300 -13.05167 -12.91937 -12.77258 -12.45325 -12.15580 -12.09114 -11.99510 -11.49558 -11.30849 -11.15966 -10.89328 -10.76300 -10.51476 -10.45607 -10.30795 -10.06841 -9.93215 -9.76490 -9.74285 -9.54970 -9.11891 -8.75948 -8.49246 -8.30940 -6.71599 -5.82632 -3.24992 0.11698 0.63970 1.68742 2.70675 2.72924 3.33682 3.39016 3.42563 3.44717 3.85987 4.13423 4.23421 4.30263 4.46674 4.54963 4.59653 4.72977 4.83093 4.91898 5.03066 5.10952 5.19971 5.30257 5.34287 5.38916 5.44927 5.47319 5.53810 5.56605 5.79016 5.80859 5.83575 6.03639 6.08731 6.23067 6.23622 6.29615 6.37956 6.48951 6.51595 6.55061 6.57944 6.76302 6.87397 6.95920 7.27871 7.55522 7.67437 7.71307 7.77280 8.34302 8.41504 9.17640 9.80730 10.37761 11.26329 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.001946 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.580380 B =14388.295172 C =14774.520304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.725 5.725 14 C 0.510 3.490 15 O -0.533 6.533 16 C -0.110 4.110 17 C -0.037 4.037 18 C -0.100 4.100 19 C -0.088 4.088 20 C -0.113 4.113 21 C 0.145 3.855 22 N -0.493 5.493 23 C 0.071 3.929 24 C -0.152 4.152 25 C -0.021 4.021 26 C -0.100 4.100 27 C -0.138 4.138 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -22.417 11.971 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.375 5.375 14 C 0.295 3.705 15 O -0.409 6.409 16 C -0.150 4.150 17 C -0.038 4.038 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.026 4.026 22 N -0.201 5.201 23 C -0.072 4.072 24 C -0.172 4.172 25 C -0.026 4.026 26 C -0.118 4.118 27 C -0.178 4.178 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.078 -23.415 10.815 25.815 hybrid contribution 0.768 2.006 0.688 2.255 sum 1.847 -21.409 11.503 24.374 Atomic orbital electron populations 1.70036 1.05252 1.25441 1.54031 1.25070 0.95314 0.98467 1.00904 0.86223 0.79356 0.83905 0.77285 1.20257 1.21712 1.21559 1.19231 0.92600 0.84706 1.41558 0.91593 1.44103 1.35820 1.01675 1.49963 1.20742 0.88904 0.97924 0.87696 1.22533 1.00502 0.94754 1.00821 1.21045 0.98488 0.88222 0.87463 1.46360 1.68781 1.06472 1.15879 1.20372 0.77784 0.83036 0.89291 1.90746 1.45654 1.78214 1.26315 1.20813 1.04772 0.91206 0.98214 1.19153 0.93611 0.94127 0.96937 1.20791 0.95861 0.95622 0.99578 1.20920 0.98493 0.93978 0.97399 1.19033 0.94177 0.96407 1.01878 1.23193 0.98217 0.89365 0.91868 1.67416 1.01024 1.37664 1.13983 1.22147 0.93286 0.94082 0.97650 1.21920 0.99968 0.95295 1.00030 1.18124 0.93022 0.94410 0.97016 1.20776 0.99738 0.92812 0.98463 1.22364 0.97142 0.99468 0.98871 1.20873 0.97911 0.86565 0.92646 0.93636 0.96137 0.89007 0.92757 0.92171 0.90093 0.77081 0.87721 0.87792 0.85544 0.84822 0.82076 0.83125 0.84513 0.85223 0.92352 0.92829 0.96220 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 12 C 0.15 2.53 2.42 -67.89 -0.16 2.37 16 13 N -0.72 -9.22 5.08 -53.76 -0.27 -9.49 16 14 C 0.51 6.66 7.79 -10.99 -0.09 6.57 16 15 O -0.53 -9.42 15.70 5.56 0.09 -9.33 16 16 C -0.11 -0.94 5.80 -29.04 -0.17 -1.11 16 17 C -0.04 -0.37 4.34 -104.92 -0.46 -0.83 16 18 C -0.10 -0.95 9.58 -39.90 -0.38 -1.34 16 19 C -0.09 -0.79 9.81 -39.52 -0.39 -1.18 16 20 C -0.11 -1.17 5.74 -106.86 -0.61 -1.78 16 21 C 0.15 1.40 11.05 -16.97 -0.19 1.21 16 22 N -0.49 -5.41 10.30 -13.15 -0.14 -5.55 16 23 C 0.07 0.69 11.07 -17.96 -0.20 0.49 16 24 C -0.15 -1.45 9.88 -39.40 -0.39 -1.84 16 25 C -0.02 -0.22 5.75 -106.81 -0.61 -0.84 16 26 C -0.10 -1.04 9.42 -39.56 -0.37 -1.41 16 27 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 28 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 35 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 36 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -33.99 386.03 -10.95 -44.94 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.93 Total: 2.64 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.59 Total: -4.93 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.30 Total: -55.46 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.99 -10.95 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859264612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.725 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds