Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39649 * 120.19516 * 343.95064 * 3 2 1 5 5 C 1.37787 * 119.78178 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.41639 * 359.97438 * 5 4 3 7 7 C 1.38377 * 120.09201 * 0.02938 * 6 5 4 8 8 C 1.38230 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.51390 * 109.74346 * 179.97438 * 7 6 5 10 10 C 1.54335 * 105.17537 * 342.78451 * 9 7 6 11 11 H 1.09004 * 110.98816 * 268.10252 * 10 9 7 12 12 N 1.46496 * 110.81875 * 144.64426 * 10 9 7 13 13 C 1.34783 * 120.00079 * 160.55912 * 12 10 9 14 14 O 1.21586 * 119.99671 * 359.97438 * 13 12 10 15 15 N 1.34778 * 119.99833 * 179.97438 * 13 12 10 16 16 C 1.46501 * 119.99537 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01794 * 325.69939 * 16 15 13 18 18 C 1.53876 * 110.03215 * 87.09365 * 16 15 13 19 19 C 1.54264 * 106.60102 * 119.33241 * 18 16 15 20 20 C 1.54894 * 104.19615 * 23.60756 * 19 18 16 21 21 H 1.08997 * 110.75486 * 80.37417 * 20 19 18 22 22 C 1.50699 * 110.75369 * 203.74599 * 20 19 18 23 23 H 1.07998 * 119.99739 * 118.55086 * 22 20 19 24 24 C 1.37873 * 120.00094 * 298.54167 * 22 20 19 25 25 N 1.31516 * 120.00212 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 120.00185 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47011 * 90.00314 * 26 24 22 28 28 H 1.48498 * 109.47084 * 210.00371 * 26 24 22 29 29 H 1.48497 * 109.46906 * 330.00536 * 26 24 22 30 30 C 1.54263 * 110.03040 * 204.30537 * 16 15 13 31 31 C 1.51425 * 130.20718 * 180.02562 * 6 5 4 32 32 H 1.07996 * 120.10863 * 0.02562 * 4 3 2 33 33 H 1.07992 * 119.79141 * 179.97438 * 5 4 3 34 34 H 1.07988 * 119.95319 * 180.02562 * 8 7 6 35 35 H 1.08999 * 110.30524 * 223.86232 * 9 7 6 36 36 H 1.08999 * 110.30643 * 101.71029 * 9 7 6 37 37 H 0.97000 * 120.00084 * 340.55037 * 12 10 9 38 38 H 0.96992 * 120.00283 * 359.97438 * 15 13 12 39 39 H 1.09002 * 110.03233 * 238.62039 * 18 16 15 40 40 H 1.09003 * 110.02920 * 0.04572 * 18 16 15 41 41 H 1.08995 * 110.48853 * 142.29018 * 19 18 16 42 42 H 1.09005 * 110.48374 * 264.93080 * 19 18 16 43 43 H 0.96999 * 120.00223 * 179.97438 * 25 24 22 44 44 H 1.08996 * 110.48639 * 335.74236 * 30 16 15 45 45 H 1.09002 * 110.48477 * 98.38059 * 30 16 15 46 46 H 1.08997 * 110.29905 * 78.30518 * 31 6 5 47 47 H 1.09001 * 110.38345 * 316.20538 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -1.1590 0.3337 5 6 4.6487 -1.1487 0.3315 6 6 5.3416 0.0057 -0.0005 7 6 4.6512 1.1582 -0.3321 8 6 3.2689 1.1597 -0.3332 9 6 5.6309 2.2676 -0.6505 10 6 6.9769 1.8006 -0.0569 11 1 7.1020 2.1664 0.9623 12 7 8.0947 2.2278 -0.9019 13 6 9.3425 2.2770 -0.3947 14 8 9.5402 1.9673 0.7643 15 7 10.3710 2.6695 -1.1723 16 6 11.7272 2.7235 -0.6208 17 1 11.6920 3.0181 0.4281 18 6 12.4079 1.3505 -0.7601 19 6 13.6558 1.5647 -1.6413 20 6 13.9875 3.0681 -1.4711 21 1 14.5277 3.2416 -0.5405 22 6 14.7749 3.5781 -2.6505 23 1 14.3708 4.3651 -3.2699 24 6 16.0111 3.0400 -2.9387 25 7 16.5031 2.0814 -2.1847 26 14 16.9875 3.6726 -4.4003 27 1 17.8543 4.7978 -3.9669 28 1 17.8316 2.5780 -4.9429 29 1 16.0526 4.1451 -5.4529 30 6 12.5841 3.7247 -1.4225 31 6 6.8318 0.2642 -0.0747 32 1 2.7363 -2.0609 0.5927 33 1 5.1924 -2.0453 0.5899 34 1 2.7309 2.0595 -0.5925 35 1 5.3135 3.1988 -0.1812 36 1 5.7180 2.3973 -1.7292 37 1 7.9370 2.4750 -1.8265 38 1 10.2133 2.9161 -2.0970 39 1 12.7030 0.9788 0.2212 40 1 11.7295 0.6443 -1.2388 41 1 14.4829 0.9492 -1.2876 42 1 13.4300 1.3395 -2.6836 43 1 17.3727 1.7026 -2.3876 44 1 12.1851 3.8479 -2.4293 45 1 12.6292 4.6851 -0.9089 46 1 7.2409 -0.1440 -0.9989 47 1 7.3363 -0.1730 0.7869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868669819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 10.754059 kcal Electronic energy + Delta-G solvation = -27441.497694 eV Core-core repulsion = 23588.196254 eV Total energy + Delta-G solvation = -3853.301440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93769 -39.78157 -37.75629 -37.06203 -35.96771 -33.74749 -33.21415 -32.12839 -31.82539 -29.00354 -28.14256 -28.01367 -26.79362 -23.99867 -23.38915 -22.47872 -21.57962 -20.79004 -19.69471 -19.25315 -18.76186 -18.00145 -16.89576 -16.42362 -16.30940 -15.88171 -15.24733 -14.83834 -14.74237 -14.58567 -14.44808 -14.20747 -14.03532 -13.90300 -13.63439 -13.31992 -13.17289 -13.07544 -12.76163 -12.62059 -12.34415 -12.08260 -11.84444 -11.75870 -11.47941 -11.35759 -11.12208 -11.00543 -10.93201 -10.60250 -10.34227 -9.99564 -9.86490 -9.52150 -9.41431 -9.28372 -9.21760 -9.04002 -8.81910 -8.52312 -8.37721 -6.02218 -4.05919 0.27767 0.79603 2.21834 2.46543 2.73426 3.28653 3.29687 3.35979 3.36747 3.37833 3.39376 3.96006 4.05749 4.37057 4.39866 4.43155 4.54361 4.72126 4.74156 4.77679 5.08290 5.11827 5.28574 5.30013 5.37651 5.48776 5.52195 5.65058 5.67819 5.71592 5.75104 5.76309 5.83978 6.05404 6.28524 6.32188 6.36046 6.41159 6.56777 6.66944 6.73720 6.89390 6.94806 7.02749 7.03808 7.27314 7.37027 7.71233 7.87620 8.01564 8.16611 8.41199 8.76463 8.96164 9.58388 11.06774 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033294 B = 0.001647 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.777894 B =16997.803209 C =17157.639884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.258 3.742 3 C -0.035 4.035 4 C -0.067 4.067 5 C -0.107 4.107 6 C -0.054 4.054 7 C -0.097 4.097 8 C -0.054 4.054 9 C -0.087 4.087 10 C 0.170 3.830 11 H 0.103 0.897 12 N -0.745 5.745 13 C 0.702 3.298 14 O -0.591 6.591 15 N -0.732 5.732 16 C 0.156 3.844 17 H 0.079 0.921 18 C -0.135 4.135 19 C -0.100 4.100 20 C 0.051 3.949 21 H 0.032 0.968 22 C -0.515 4.515 23 H 0.055 0.945 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.889 3.111 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.275 1.275 30 C -0.121 4.121 31 C -0.103 4.103 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.396 0.604 38 H 0.393 0.607 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.034 -3.656 2.464 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.058 4.058 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.055 4.055 7 C -0.098 4.098 8 C -0.075 4.075 9 C -0.125 4.125 10 C 0.063 3.937 11 H 0.121 0.879 12 N -0.401 5.401 13 C 0.402 3.598 14 O -0.469 6.469 15 N -0.386 5.386 16 C 0.052 3.948 17 H 0.098 0.902 18 C -0.174 4.174 19 C -0.138 4.138 20 C 0.033 3.967 21 H 0.050 0.950 22 C -0.553 4.553 23 H 0.073 0.927 24 C -0.139 4.139 25 N -0.526 5.526 26 Si 0.717 3.283 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.200 1.200 30 C -0.159 4.159 31 C -0.142 4.142 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.230 0.770 38 H 0.227 0.773 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.415 -4.042 3.575 25.981 hybrid contribution 0.800 0.365 -1.738 1.948 sum -24.614 -3.677 1.837 24.955 Atomic orbital electron populations 1.81275 1.12072 1.07325 1.08889 1.25676 0.92600 0.93827 0.93660 1.15775 0.84201 0.95862 1.07998 1.21070 0.93916 0.96739 0.97005 1.20610 0.93198 0.98104 1.00628 1.20891 0.96322 0.93295 0.94977 1.20297 0.92797 0.96227 1.00483 1.20549 0.92772 0.96901 0.97230 1.21300 0.91990 0.97019 1.02183 1.21284 0.83909 0.92697 0.95793 0.87858 1.45127 1.06039 1.73988 1.14978 1.16028 0.80314 0.78365 0.85125 1.90912 1.83807 1.55873 1.16351 1.45560 1.07349 1.71346 1.14323 1.21751 0.78161 0.96797 0.98086 0.90243 1.22665 0.98628 0.95590 1.00481 1.22301 0.94118 1.00397 0.96999 1.19576 0.89130 0.90860 0.97181 0.94986 1.21089 1.02200 1.19919 1.12122 0.92676 1.24971 0.97487 0.94967 0.96433 1.69958 1.18229 1.25973 1.38438 0.86649 0.80138 0.78469 0.83028 1.20743 1.21320 1.20016 1.22784 0.98226 0.96733 0.98184 1.21679 0.90885 0.97355 1.04248 0.84740 0.84815 0.85055 0.89359 0.89100 0.77001 0.77318 0.92628 0.93278 0.91286 0.93580 0.93060 0.92128 0.92872 0.88997 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.50 18.54 41.84 0.78 -3.72 16 2 C 0.26 2.12 15.33 -22.47 -0.34 1.78 16 3 C -0.03 -0.22 5.73 -106.98 -0.61 -0.83 16 4 C -0.07 -0.36 9.76 -39.22 -0.38 -0.74 16 5 C -0.11 -0.61 10.02 -39.58 -0.40 -1.00 16 6 C -0.05 -0.35 6.14 -104.05 -0.64 -0.99 16 7 C -0.10 -0.58 6.12 -104.23 -0.64 -1.22 16 8 C -0.05 -0.31 9.75 -39.12 -0.38 -0.69 16 9 C -0.09 -0.45 6.47 -26.84 -0.17 -0.63 16 10 C 0.17 1.34 3.36 -66.53 -0.22 1.11 16 11 H 0.10 1.00 7.71 -51.93 -0.40 0.60 16 12 N -0.75 -6.67 5.17 -57.31 -0.30 -6.97 16 13 C 0.70 9.64 8.56 -86.91 -0.74 8.89 16 14 O -0.59 -10.56 15.74 5.29 0.08 -10.47 16 15 N -0.73 -10.06 4.99 -57.58 -0.29 -10.35 16 16 C 0.16 2.70 3.23 -66.81 -0.22 2.48 16 17 H 0.08 1.47 7.59 -51.93 -0.39 1.08 16 18 C -0.13 -2.53 6.59 -25.61 -0.17 -2.70 16 19 C -0.10 -2.23 5.57 -25.07 -0.14 -2.37 16 20 C 0.05 1.21 2.83 -89.71 -0.25 0.96 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.52 -13.48 8.54 -34.44 -0.29 -13.77 16 23 H 0.06 1.41 7.78 -52.49 -0.41 1.01 16 24 C 0.06 1.70 5.33 -17.82 -0.10 1.60 16 25 N -0.89 -24.80 12.02 55.43 0.67 -24.13 16 26 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 C -0.12 -2.28 5.95 -25.01 -0.15 -2.43 16 31 C -0.10 -0.79 6.49 -26.83 -0.17 -0.96 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.36 7.78 -51.93 -0.40 -0.05 16 37 H 0.40 2.44 8.38 -40.82 -0.34 2.09 16 38 H 0.39 4.40 8.36 -40.82 -0.34 4.06 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.87 7.92 -51.93 -0.41 0.46 16 41 H 0.07 1.70 7.37 -51.93 -0.38 1.32 16 42 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.06 1.09 7.63 -51.93 -0.40 0.69 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -31.81 392.92 -11.02 -42.83 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.83 Total: 2.81 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -6.03 Total: -11.52 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.86 Total: -45.17 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.81 -11.02 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868669819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.580 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds