Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39649 * 120.19516 * 343.95064 * 3 2 1 5 5 C 1.37787 * 119.78178 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.41639 * 359.97438 * 5 4 3 7 7 C 1.38377 * 120.09201 * 0.02938 * 6 5 4 8 8 C 1.38230 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.51390 * 109.74346 * 179.97438 * 7 6 5 10 10 C 1.54335 * 105.17537 * 342.78451 * 9 7 6 11 11 H 1.09004 * 110.98816 * 268.10252 * 10 9 7 12 12 N 1.46496 * 110.81875 * 144.64426 * 10 9 7 13 13 C 1.34783 * 120.00079 * 160.55912 * 12 10 9 14 14 O 1.21586 * 119.99671 * 359.97438 * 13 12 10 15 15 N 1.34778 * 119.99833 * 179.97438 * 13 12 10 16 16 C 1.46501 * 119.99537 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01794 * 325.69939 * 16 15 13 18 18 C 1.53876 * 110.03215 * 87.09365 * 16 15 13 19 19 C 1.54264 * 106.60102 * 119.33241 * 18 16 15 20 20 C 1.54894 * 104.19615 * 23.60756 * 19 18 16 21 21 H 1.08997 * 110.75486 * 80.37417 * 20 19 18 22 22 C 1.50699 * 110.75369 * 203.74599 * 20 19 18 23 23 H 1.07998 * 119.99739 * 118.55086 * 22 20 19 24 24 C 1.37873 * 120.00094 * 298.54167 * 22 20 19 25 25 N 1.31516 * 120.00212 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 120.00185 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47011 * 90.00314 * 26 24 22 28 28 H 1.48498 * 109.47084 * 210.00371 * 26 24 22 29 29 H 1.48497 * 109.46906 * 330.00536 * 26 24 22 30 30 C 1.54263 * 110.03040 * 204.30537 * 16 15 13 31 31 C 1.51425 * 130.20718 * 180.02562 * 6 5 4 32 32 H 1.07996 * 120.10863 * 0.02562 * 4 3 2 33 33 H 1.07992 * 119.79141 * 179.97438 * 5 4 3 34 34 H 1.07988 * 119.95319 * 180.02562 * 8 7 6 35 35 H 1.08999 * 110.30524 * 223.86232 * 9 7 6 36 36 H 1.08999 * 110.30643 * 101.71029 * 9 7 6 37 37 H 0.97000 * 120.00084 * 340.55037 * 12 10 9 38 38 H 0.96992 * 120.00283 * 359.97438 * 15 13 12 39 39 H 1.09002 * 110.03233 * 238.62039 * 18 16 15 40 40 H 1.09003 * 110.02920 * 0.04572 * 18 16 15 41 41 H 1.08995 * 110.48853 * 142.29018 * 19 18 16 42 42 H 1.09005 * 110.48374 * 264.93080 * 19 18 16 43 43 H 0.96999 * 120.00223 * 179.97438 * 25 24 22 44 44 H 1.08996 * 110.48639 * 335.74236 * 30 16 15 45 45 H 1.09002 * 110.48477 * 98.38059 * 30 16 15 46 46 H 1.08997 * 110.29905 * 78.30518 * 31 6 5 47 47 H 1.09001 * 110.38345 * 316.20538 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -1.1590 0.3337 5 6 4.6487 -1.1487 0.3315 6 6 5.3416 0.0057 -0.0005 7 6 4.6512 1.1582 -0.3321 8 6 3.2689 1.1597 -0.3332 9 6 5.6309 2.2676 -0.6505 10 6 6.9769 1.8006 -0.0569 11 1 7.1020 2.1664 0.9623 12 7 8.0947 2.2278 -0.9019 13 6 9.3425 2.2770 -0.3947 14 8 9.5402 1.9673 0.7643 15 7 10.3710 2.6695 -1.1723 16 6 11.7272 2.7235 -0.6208 17 1 11.6920 3.0181 0.4281 18 6 12.4079 1.3505 -0.7601 19 6 13.6558 1.5647 -1.6413 20 6 13.9875 3.0681 -1.4711 21 1 14.5277 3.2416 -0.5405 22 6 14.7749 3.5781 -2.6505 23 1 14.3708 4.3651 -3.2699 24 6 16.0111 3.0400 -2.9387 25 7 16.5031 2.0814 -2.1847 26 14 16.9875 3.6726 -4.4003 27 1 17.8543 4.7978 -3.9669 28 1 17.8316 2.5780 -4.9429 29 1 16.0526 4.1451 -5.4529 30 6 12.5841 3.7247 -1.4225 31 6 6.8318 0.2642 -0.0747 32 1 2.7363 -2.0609 0.5927 33 1 5.1924 -2.0453 0.5899 34 1 2.7309 2.0595 -0.5925 35 1 5.3135 3.1988 -0.1812 36 1 5.7180 2.3973 -1.7292 37 1 7.9370 2.4750 -1.8265 38 1 10.2133 2.9161 -2.0970 39 1 12.7030 0.9788 0.2212 40 1 11.7295 0.6443 -1.2388 41 1 14.4829 0.9492 -1.2876 42 1 13.4300 1.3395 -2.6836 43 1 17.3727 1.7026 -2.3876 44 1 12.1851 3.8479 -2.4293 45 1 12.6292 4.6851 -0.9089 46 1 7.2409 -0.1440 -0.9989 47 1 7.3363 -0.1730 0.7869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868669819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -6.962636 kcal Electronic energy + Delta-G solvation = -27442.265948 eV Core-core repulsion = 23588.196254 eV Total energy + Delta-G solvation = -3854.069694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57498 -40.76095 -38.91044 -38.05583 -36.73153 -35.21921 -34.31154 -33.35877 -32.57957 -29.98531 -29.64956 -28.55482 -28.23209 -25.75916 -24.09161 -23.03325 -22.34312 -21.64880 -21.22918 -20.81336 -19.55674 -18.88311 -18.45293 -17.49399 -16.99275 -16.59251 -16.54305 -16.41376 -15.81601 -15.63997 -15.27809 -15.21258 -15.01106 -14.62456 -14.39642 -14.22845 -13.96075 -13.81327 -13.78835 -13.71219 -13.55383 -13.36219 -12.98072 -12.77094 -12.67556 -12.46768 -12.38769 -12.33027 -12.07051 -12.00218 -11.81288 -11.60619 -11.32850 -11.16867 -11.00896 -10.76333 -10.42285 -10.24568 -9.84468 -9.67925 -9.52408 -8.06089 -6.16333 -0.22329 0.38023 1.45466 1.46784 1.55927 1.58648 1.78318 1.89787 2.25295 2.47984 2.79899 2.86459 3.24942 3.31698 3.46582 3.66977 3.98556 4.00318 4.04008 4.11326 4.18247 4.20981 4.28305 4.34417 4.65562 4.66607 4.75501 4.79795 4.84281 4.92489 4.96884 5.01378 5.09422 5.13156 5.15105 5.15627 5.22279 5.23909 5.32445 5.37380 5.47247 5.59095 5.65583 5.71060 5.77921 5.84376 5.99380 6.04964 6.15459 6.41931 6.42695 6.94622 7.23306 7.51516 7.71474 9.02170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033294 B = 0.001647 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.777894 B =16997.803209 C =17157.639884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.282 3.718 3 C -0.044 4.044 4 C -0.062 4.062 5 C -0.111 4.111 6 C -0.062 4.062 7 C -0.099 4.099 8 C -0.050 4.050 9 C -0.076 4.076 10 C 0.165 3.835 11 H 0.083 0.917 12 N -0.723 5.723 13 C 0.701 3.299 14 O -0.634 6.634 15 N -0.724 5.724 16 C 0.171 3.829 17 H 0.068 0.932 18 C -0.123 4.123 19 C -0.089 4.089 20 C 0.038 3.962 21 H -0.001 1.001 22 C -0.527 4.527 23 H 0.060 0.940 24 C 0.011 3.989 25 N -0.920 5.920 26 Si 0.952 3.048 27 H -0.279 1.279 28 H -0.289 1.289 29 H -0.264 1.264 30 C -0.106 4.106 31 C -0.099 4.099 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.414 0.586 38 H 0.409 0.591 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.258 0.742 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.790 -2.923 0.917 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.032 4.032 3 C -0.048 4.048 4 C -0.082 4.082 5 C -0.129 4.129 6 C -0.063 4.063 7 C -0.100 4.100 8 C -0.070 4.070 9 C -0.114 4.114 10 C 0.059 3.941 11 H 0.101 0.899 12 N -0.380 5.380 13 C 0.401 3.599 14 O -0.516 6.516 15 N -0.379 5.379 16 C 0.066 3.934 17 H 0.086 0.914 18 C -0.162 4.162 19 C -0.127 4.127 20 C 0.019 3.981 21 H 0.017 0.983 22 C -0.566 4.566 23 H 0.078 0.922 24 C -0.187 4.187 25 N -0.560 5.560 26 Si 0.778 3.222 27 H -0.205 1.205 28 H -0.215 1.215 29 H -0.188 1.188 30 C -0.144 4.144 31 C -0.138 4.138 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.251 0.749 38 H 0.246 0.754 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.228 -3.290 1.976 27.497 hybrid contribution 1.373 0.107 -1.212 1.835 sum -25.855 -3.182 0.764 26.061 Atomic orbital electron populations 1.81299 1.13475 1.08923 1.10793 1.25880 0.92725 0.92384 0.92206 1.15852 0.83168 0.96690 1.09045 1.21253 0.93842 0.97064 0.96085 1.20780 0.93357 0.98407 1.00329 1.20894 0.95662 0.94086 0.95673 1.20348 0.92943 0.96178 1.00501 1.20680 0.92669 0.97231 0.96449 1.21241 0.89712 0.97071 1.03331 1.21343 0.84730 0.93038 0.94992 0.89859 1.44915 1.04554 1.72617 1.15902 1.16145 0.81365 0.77960 0.84441 1.90894 1.84646 1.57666 1.18357 1.45215 1.06034 1.71572 1.15093 1.21283 0.79710 0.95048 0.97388 0.91377 1.22533 0.97335 0.97048 0.99326 1.22062 0.94605 0.99067 0.96971 1.19574 0.91402 0.92251 0.94857 0.98318 1.21496 1.02643 1.19749 1.12671 0.92203 1.25761 0.98714 0.95248 0.99026 1.70104 1.18498 1.27255 1.40105 0.85648 0.78740 0.77712 0.80080 1.20515 1.21453 1.18811 1.22571 0.95463 0.96924 0.99433 1.21566 0.91699 0.96987 1.03530 0.83120 0.83538 0.83450 0.88085 0.87055 0.74885 0.75438 0.93369 0.91921 0.94577 0.94318 0.93285 0.90619 0.92111 0.88917 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.77 18.54 19.00 0.35 -9.42 16 2 C 0.28 4.29 15.33 88.33 1.35 5.64 16 3 C -0.04 -0.47 5.73 -21.39 -0.12 -0.59 16 4 C -0.06 -0.54 9.76 22.50 0.22 -0.32 16 5 C -0.11 -1.04 10.02 22.27 0.22 -0.81 16 6 C -0.06 -0.70 6.14 -19.50 -0.12 -0.82 16 7 C -0.10 -0.93 6.12 -19.61 -0.12 -1.05 16 8 C -0.05 -0.44 9.75 22.57 0.22 -0.22 16 9 C -0.08 -0.56 6.47 30.52 0.20 -0.36 16 10 C 0.16 2.30 3.36 45.90 0.15 2.45 16 11 H 0.08 1.55 7.71 -2.38 -0.02 1.53 16 12 N -0.72 -11.19 5.17 -453.48 -2.35 -13.53 16 13 C 0.70 18.07 8.56 179.05 1.53 19.60 16 14 O -0.63 -22.31 15.74 -3.99 -0.06 -22.37 16 15 N -0.72 -18.35 4.99 -454.34 -2.27 -20.62 16 16 C 0.17 5.75 3.23 45.72 0.15 5.90 16 17 H 0.07 2.49 7.59 -2.39 -0.02 2.48 16 18 C -0.12 -4.62 6.59 31.32 0.21 -4.41 16 19 C -0.09 -4.03 5.57 31.67 0.18 -3.85 16 20 C 0.04 1.82 2.83 -10.20 -0.03 1.79 16 21 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 22 C -0.53 -27.62 8.54 25.60 0.22 -27.40 16 23 H 0.06 3.01 7.78 -2.91 -0.02 2.98 16 24 C 0.01 0.60 5.33 84.65 0.45 1.05 16 25 N -0.92 -52.66 12.02 21.45 0.26 -52.41 16 26 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 30 C -0.11 -3.86 5.95 31.71 0.19 -3.67 16 31 C -0.10 -1.38 6.49 30.53 0.20 -1.18 16 32 H 0.15 0.78 8.06 -2.91 -0.02 0.75 16 33 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.15 0.80 8.06 -2.92 -0.02 0.78 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 0.41 7.78 -2.39 -0.02 0.39 16 37 H 0.41 3.61 8.38 -92.71 -0.78 2.83 16 38 H 0.41 7.85 8.36 -92.71 -0.78 7.08 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.16 7.92 -2.39 -0.02 2.14 16 41 H 0.04 1.85 7.37 -2.39 -0.02 1.83 16 42 H 0.04 1.77 8.04 -2.38 -0.02 1.76 16 43 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.08 2.53 7.63 -2.39 -0.02 2.51 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -70.60 392.92 2.52 -68.09 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -0.54 Total: 14.25 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.10 Total: -8.26 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -4.00 Total: -95.97 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.60 2.52 -68.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868669819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.123 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds