Wall clock time and date at job start Sat Apr 11 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86811 * 119.99877 * 2 1 4 4 H 1.48500 * 109.46821 * 274.06111 * 3 2 1 5 5 H 1.48498 * 109.47033 * 34.06425 * 3 2 1 6 6 H 1.48495 * 109.46884 * 154.06776 * 3 2 1 7 7 C 1.38811 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 197.52845 * 7 2 1 9 9 N 1.36932 * 119.99693 * 17.52873 * 7 2 1 10 10 C 1.46928 * 120.63051 * 207.99922 * 9 7 2 11 11 C 1.53191 * 108.77719 * 233.63324 * 10 9 7 12 12 C 1.53043 * 109.30911 * 305.36041 * 11 10 9 13 13 N 1.46504 * 109.45878 * 181.38873 * 12 11 10 14 14 C 1.34774 * 120.00198 * 154.97559 * 13 12 11 15 15 O 1.21285 * 119.99799 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00215 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47303 * 179.97438 * 16 14 13 18 18 C 1.36171 * 120.19669 * 264.72353 * 17 16 14 19 19 C 1.39321 * 120.86760 * 179.72296 * 18 17 16 20 20 C 1.36111 * 121.06501 * 0.58203 * 19 18 17 21 21 C 1.40553 * 119.74928 * 359.70465 * 20 19 18 22 22 N 1.33694 * 121.08371 * 180.02562 * 21 20 19 23 23 C 1.31085 * 121.32050 * 180.02562 * 22 21 20 24 24 C 1.39335 * 121.75352 * 359.95661 * 23 22 21 25 25 C 1.36576 * 119.93902 * 0.02562 * 24 23 22 26 26 C 1.40396 * 120.19062 * 85.00004 * 17 16 14 27 27 C 1.53036 * 109.52573 * 61.37386 * 12 11 10 28 28 C 1.46928 * 120.63456 * 28.01997 * 9 7 2 29 29 H 0.97004 * 119.99871 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.59111 * 113.84135 * 10 9 7 31 31 H 1.09007 * 109.70198 * 353.48792 * 10 9 7 32 32 H 1.09000 * 109.49803 * 185.41551 * 11 10 9 33 33 H 1.08996 * 109.52984 * 65.32865 * 11 10 9 34 34 H 1.08997 * 109.46084 * 301.35639 * 12 11 10 35 35 H 0.97002 * 119.99581 * 335.24564 * 13 12 11 36 36 H 1.08996 * 109.47671 * 300.00099 * 16 14 13 37 37 H 1.09003 * 109.47215 * 60.00003 * 16 14 13 38 38 H 1.08003 * 119.56929 * 0.02653 * 18 17 16 39 39 H 1.07996 * 119.46577 * 180.26457 * 19 18 17 40 40 H 1.07998 * 120.11971 * 179.68083 * 20 19 18 41 41 H 1.08000 * 119.11854 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.02645 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.92174 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.49819 * 58.57880 * 27 12 11 45 45 H 1.08998 * 109.49990 * 178.67635 * 27 12 11 46 46 H 1.09000 * 109.58641 * 246.15486 * 28 9 7 47 47 H 1.08995 * 109.58197 * 6.44328 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0960 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2822 9 7 1.3733 -2.3606 -0.3561 10 6 1.8145 -3.6541 0.1832 11 6 2.0775 -4.6111 -0.9837 12 6 0.8284 -4.6905 -1.8644 13 7 1.0648 -5.6304 -2.9630 14 6 0.0248 -6.2504 -3.5551 15 8 -1.1067 -6.0305 -3.1780 16 6 0.2680 -7.2167 -4.6856 17 6 -1.0492 -7.7680 -5.1673 18 6 -1.5096 -8.9573 -4.6901 19 6 -2.7281 -9.4771 -5.1215 20 6 -3.4870 -8.8186 -6.0396 21 6 -3.0429 -7.5909 -6.5601 22 7 -3.7671 -6.9212 -7.4626 23 6 -3.3571 -5.7762 -7.9514 24 6 -2.1513 -5.2001 -7.5569 25 6 -1.3627 -5.8315 -6.6379 26 6 -1.8061 -7.0611 -6.1152 27 6 0.5168 -3.3057 -2.4362 28 6 0.2358 -2.3339 -1.2858 29 1 -0.4850 0.8401 -0.0004 30 1 1.0368 -4.0666 0.8259 31 1 2.7304 -3.5192 0.7587 32 1 2.3125 -5.6022 -0.5956 33 1 2.9164 -4.2434 -1.5745 34 1 -0.0157 -5.0351 -1.2671 35 1 1.9702 -5.8095 -3.2617 36 1 0.7672 -6.6994 -5.5049 37 1 0.8974 -8.0348 -4.3353 38 1 -0.9249 -9.5025 -3.9639 39 1 -3.0736 -10.4203 -4.7248 40 1 -4.4268 -9.2381 -6.3671 41 1 -3.9704 -5.2656 -8.6792 42 1 -1.8407 -4.2551 -7.9776 43 1 -0.4253 -5.3991 -6.3205 44 1 1.3704 -2.9498 -3.0131 45 1 -0.3590 -3.3673 -3.0821 46 1 -0.6707 -2.6387 -0.7629 47 1 0.1092 -1.3254 -1.6793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874441564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:00 Heat of formation + Delta-G solvation = 13.142503 kcal Electronic energy + Delta-G solvation = -28821.772941 eV Core-core repulsion = 24968.575071 eV Total energy + Delta-G solvation = -3853.197870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.97058 -40.82246 -39.04068 -38.03577 -35.99697 -35.07304 -33.93568 -32.43948 -31.71938 -31.47428 -31.19106 -28.69112 -26.75922 -25.19748 -24.55542 -23.95042 -23.83846 -22.25225 -21.30748 -20.76110 -19.09212 -18.84945 -18.06757 -17.98278 -17.87716 -17.18226 -16.65208 -16.12029 -15.67619 -15.52814 -15.37158 -15.34205 -15.17222 -14.94792 -14.70969 -14.54215 -14.38734 -14.13533 -14.01304 -13.82383 -13.20311 -13.06121 -12.94060 -12.65212 -12.62076 -12.61076 -12.50650 -12.13923 -12.12845 -12.02687 -11.86541 -11.54159 -11.48048 -11.38645 -10.83529 -10.59518 -10.49505 -9.97330 -9.70854 -9.14636 -8.73007 -7.88538 -5.34967 -0.57536 -0.11465 0.98929 1.47179 1.48198 1.57894 1.69646 1.94546 2.32600 2.50830 3.13985 3.27322 3.37848 3.46821 3.64643 3.80985 3.83772 3.87488 3.88574 4.03474 4.08577 4.14231 4.25309 4.33757 4.34391 4.46975 4.49983 4.56211 4.62860 4.66001 4.80163 4.86864 4.87748 5.02061 5.06950 5.07923 5.08952 5.13264 5.14956 5.31317 5.41457 5.45118 5.49353 5.58544 5.61097 5.63464 5.68300 5.93691 6.37193 6.66425 6.92471 7.12050 7.36688 7.83221 8.35943 9.18429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.002536 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.430472 B =11037.913885 C =12059.617823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.261 4.261 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.139 3.861 11 C -0.120 4.120 12 C 0.163 3.837 13 N -0.709 5.709 14 C 0.509 3.491 15 O -0.582 6.582 16 C -0.097 4.097 17 C -0.054 4.054 18 C -0.113 4.113 19 C -0.094 4.094 20 C -0.117 4.117 21 C 0.096 3.904 22 N -0.505 5.505 23 C 0.121 3.879 24 C -0.179 4.179 25 C -0.068 4.068 26 C -0.107 4.107 27 C -0.128 4.128 28 C 0.183 3.817 29 H 0.249 0.751 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.417 0.583 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.186 0.814 42 H 0.164 0.836 43 H 0.148 0.852 44 H 0.064 0.936 45 H 0.042 0.958 46 H -0.016 1.016 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -19.948 -15.732 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.391 4.391 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.014 3.986 11 C -0.160 4.160 12 C 0.058 3.942 13 N -0.361 5.361 14 C 0.297 3.703 15 O -0.461 6.461 16 C -0.136 4.136 17 C -0.056 4.056 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.136 4.136 21 C -0.025 4.025 22 N -0.214 5.214 23 C -0.051 4.051 24 C -0.198 4.198 25 C -0.094 4.094 26 C -0.109 4.109 27 C -0.168 4.168 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.255 0.745 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.203 0.797 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.002 0.998 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.444 -20.131 -15.642 25.534 hybrid contribution 0.695 1.755 0.434 1.937 sum 2.140 -18.376 -15.208 23.949 Atomic orbital electron populations 1.70222 1.06964 1.25830 1.55502 1.25884 0.95966 1.01854 1.01311 0.85224 0.78310 0.79383 0.77369 1.21276 1.22568 1.18732 1.19589 0.93228 0.85840 1.40420 0.90749 1.44354 1.36195 1.02622 1.50093 1.21057 0.97763 0.85651 0.94163 1.22122 0.96306 1.00379 0.97157 1.20595 0.98337 0.87713 0.87590 1.46010 1.10274 1.43918 1.35932 1.21106 0.84441 0.81063 0.83730 1.90760 1.24553 1.65355 1.65475 1.20787 0.95916 0.99928 0.96973 1.19359 0.96061 0.94762 0.95393 1.21176 0.96792 0.95695 0.99389 1.21228 0.93856 1.00777 0.95459 1.21014 1.01154 0.93253 0.98168 1.19244 0.91645 0.96236 0.95343 1.68050 1.33380 1.09383 1.10541 1.23504 0.94312 0.90652 0.96668 1.22233 0.95993 1.02564 0.99038 1.21758 1.00378 0.92989 0.94269 1.18893 0.96154 0.96699 0.99127 1.22269 1.00226 0.95980 0.98335 1.20451 0.87770 0.97396 0.88795 0.94233 0.97391 0.91388 0.88916 0.90379 0.93013 0.74542 0.85428 0.83711 0.82961 0.82287 0.84181 0.79671 0.81802 0.83444 0.91724 0.93958 0.99796 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.88 11.22 21.65 0.24 -56.64 16 2 C -0.06 -3.09 4.90 84.86 0.42 -2.67 16 3 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.26 -14.12 9.58 84.03 0.81 -13.32 16 8 H 0.07 3.84 7.89 -2.91 -0.02 3.81 16 9 N -0.61 -30.36 2.99 -699.10 -2.09 -32.45 16 10 C 0.14 5.50 6.51 86.36 0.56 6.06 16 11 C -0.12 -3.47 5.55 30.67 0.17 -3.30 16 12 C 0.16 5.21 2.42 45.02 0.11 5.32 16 13 N -0.71 -15.92 5.08 -442.41 -2.25 -18.17 16 14 C 0.51 12.65 7.79 87.66 0.68 13.34 16 15 O -0.58 -21.40 15.70 -3.04 -0.05 -21.45 16 16 C -0.10 -1.47 5.24 29.10 0.15 -1.31 16 17 C -0.05 -1.15 4.38 -19.82 -0.09 -1.23 16 18 C -0.11 -2.07 9.58 22.05 0.21 -1.86 16 19 C -0.09 -1.70 9.94 22.04 0.22 -1.48 16 20 C -0.12 -2.67 9.98 22.34 0.22 -2.44 16 21 C 0.10 2.60 6.60 40.28 0.27 2.86 16 22 N -0.50 -13.56 10.34 -188.64 -1.95 -15.51 16 23 C 0.12 2.56 11.15 85.07 0.95 3.51 16 24 C -0.18 -3.51 10.03 22.15 0.22 -3.29 16 25 C -0.07 -1.51 9.36 22.50 0.21 -1.30 16 26 C -0.11 -2.68 5.74 -21.28 -0.12 -2.81 16 27 C -0.13 -4.99 5.65 30.67 0.17 -4.82 16 28 C 0.18 9.19 5.31 86.36 0.46 9.65 16 29 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 2.53 7.94 -2.38 -0.02 2.51 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 2.00 7.58 -2.39 -0.02 1.99 16 35 H 0.42 5.86 8.60 -92.71 -0.80 5.06 16 36 H 0.13 1.32 6.73 -2.39 -0.02 1.30 16 37 H 0.15 1.09 8.04 -2.39 -0.02 1.07 16 38 H 0.15 1.88 8.05 -2.91 -0.02 1.86 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.15 2.68 6.57 -2.91 -0.02 2.66 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 47 H 0.05 3.05 6.06 -2.39 -0.01 3.04 16 Total: -1.00 -80.62 382.80 1.75 -78.87 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.19 Total: 17.74 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.62 Total: 0.91 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.05 Total: -122.77 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -80.62 1.75 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874441564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.015 kcal (2) G-P(sol) polarization free energy of solvation -80.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds