Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48505 * 109.46923 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.47400 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.47167 * 149.99942 * 3 2 1 7 7 C 1.37876 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00141 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00035 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47217 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00065 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47516 * 179.97438 * 13 11 10 15 15 C 1.46838 * 110.99854 * 66.04526 * 14 13 11 16 16 C 1.50170 * 110.24996 * 174.63822 * 15 14 13 17 17 C 1.31642 * 123.03813 * 342.94050 * 16 15 14 18 18 C 1.47594 * 118.67286 * 180.29395 * 17 16 15 19 19 C 1.35792 * 126.68464 * 104.97411 * 18 17 16 20 20 N 1.36452 * 109.72203 * 180.02562 * 19 18 17 21 21 H 0.97002 * 124.89521 * 179.97438 * 20 19 18 22 22 C 1.37809 * 110.20281 * 359.97438 * 20 19 18 23 23 C 1.39172 * 133.27948 * 180.02562 * 22 20 19 24 24 C 1.37763 * 119.78562 * 179.97438 * 23 22 20 25 25 C 1.38785 * 120.63607 * 359.97438 * 24 23 22 26 26 C 1.36705 * 120.47730 * 0.02562 * 25 24 23 27 27 C 1.39386 * 119.78782 * 359.97438 * 26 25 24 28 28 C 1.50336 * 122.65344 * 0.57176 * 17 16 15 29 29 C 1.47213 * 111.00476 * 189.05579 * 14 13 11 30 30 H 0.96996 * 119.99479 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47029 * 60.00633 * 9 7 2 32 32 H 1.08998 * 109.47625 * 300.00194 * 9 7 2 33 33 H 0.96995 * 120.00071 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.47461 * 59.99582 * 13 11 10 35 35 H 1.08998 * 109.47251 * 299.99872 * 13 11 10 36 36 H 1.08994 * 109.33950 * 54.39799 * 15 14 13 37 37 H 1.08997 * 109.34005 * 294.87543 * 15 14 13 38 38 H 1.08004 * 118.48286 * 162.91988 * 16 15 14 39 39 H 1.08000 * 125.13563 * 0.05007 * 19 18 17 40 40 H 1.08000 * 120.11060 * 0.02562 * 23 22 20 41 41 H 1.07992 * 119.68216 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.76533 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.11111 * 179.72840 * 26 25 24 44 44 H 1.09001 * 109.43028 * 103.28163 * 28 17 16 45 45 H 1.08997 * 109.43199 * 223.13427 * 28 17 16 46 46 H 1.09004 * 109.63069 * 286.94729 * 29 14 13 47 47 H 1.09000 * 109.62423 * 47.51541 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3249 -2.8217 0.0001 12 8 6.1131 -1.8998 -0.0004 13 6 5.8272 -4.2424 -0.0003 14 7 7.2962 -4.2424 -0.0008 15 6 7.8228 -3.6861 1.2520 16 6 9.3186 -3.8136 1.2890 17 6 9.9897 -4.6238 0.4977 18 6 11.4595 -4.6773 0.6209 19 6 12.1899 -5.6672 1.1957 20 7 13.5180 -5.3631 1.1197 21 1 14.2351 -5.9190 1.4628 22 6 13.6934 -4.1523 0.4854 23 6 14.8182 -3.4012 0.1573 24 6 14.6704 -2.1969 -0.4950 25 6 13.4093 -1.7239 -0.8297 26 6 12.2921 -2.4467 -0.5164 27 6 12.4198 -3.6677 0.1436 28 6 9.3200 -5.4922 -0.5306 29 6 7.8237 -5.5996 -0.2175 30 1 -0.4849 0.8401 -0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8746 -0.6809 -0.8905 33 1 3.3695 -3.3126 0.0001 34 1 5.4640 -4.7560 -0.8905 35 1 5.4639 -4.7565 0.8894 36 1 7.3934 -4.2266 2.0955 37 1 7.5483 -2.6337 1.3231 38 1 9.8694 -3.2125 1.9975 39 1 11.7814 -6.5605 1.6447 40 1 15.8037 -3.7617 0.4126 41 1 15.5444 -1.6156 -0.7491 42 1 13.3098 -0.7781 -1.3415 43 1 11.3134 -2.0709 -0.7757 44 1 9.4564 -5.0543 -1.5194 45 1 9.7652 -6.4869 -0.5107 46 1 7.6759 -6.1979 0.6815 47 1 7.3073 -6.0632 -1.0581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913041342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = 44.908721 kcal Electronic energy + Delta-G solvation = -27858.231704 eV Core-core repulsion = 24006.411321 eV Total energy + Delta-G solvation = -3851.820383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44001 -39.56159 -38.07145 -37.07468 -34.49630 -34.06455 -32.34188 -31.60608 -30.77462 -29.64982 -29.26692 -28.26497 -26.48161 -23.94687 -23.08868 -22.96593 -21.89190 -21.75817 -20.30755 -19.81795 -18.34770 -17.39422 -17.25336 -16.50305 -16.10061 -16.00201 -15.61241 -15.17586 -14.93759 -14.67528 -14.55421 -14.37186 -14.19349 -13.94341 -13.70366 -13.53981 -13.23522 -12.93880 -12.71841 -12.63672 -12.40118 -12.17221 -12.03967 -11.87851 -11.82517 -11.49179 -11.27282 -11.06078 -10.98319 -10.71277 -10.56135 -9.95166 -9.79934 -9.47670 -9.12145 -8.80130 -8.75582 -8.43956 -8.23613 -8.06295 -7.78160 -6.20001 -4.22077 0.92949 1.43917 2.07396 2.49642 2.86531 3.26859 3.30466 3.35323 3.44196 3.63466 3.74718 4.28314 4.35575 4.52858 4.57269 4.67456 4.85208 4.92576 5.01596 5.13075 5.15599 5.22588 5.30110 5.32948 5.36915 5.40815 5.47016 5.51665 5.53429 5.62637 5.63299 5.64724 5.85570 5.90649 6.05056 6.15227 6.29442 6.37639 6.43893 6.54552 6.60482 6.82769 6.92680 6.96575 7.08931 7.10590 7.12682 7.25601 7.28130 7.42467 8.17079 8.55182 8.77612 9.00075 9.40535 10.91924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002116 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.847462 B =13226.857778 C =14483.036903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.540 6.540 13 C 0.034 3.966 14 N -0.513 5.513 15 C 0.077 3.923 16 C -0.129 4.129 17 C -0.057 4.057 18 C -0.130 4.130 19 C 0.054 3.946 20 N -0.594 5.594 21 H 0.414 0.586 22 C 0.092 3.908 23 C -0.135 4.135 24 C -0.099 4.099 25 C -0.148 4.148 26 C -0.063 4.063 27 C -0.093 4.093 28 C -0.067 4.067 29 C 0.052 3.948 30 H 0.267 0.733 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.395 0.605 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.170 0.830 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.037 0.963 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.232 -14.945 1.952 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.358 5.358 11 C 0.285 3.715 12 O -0.418 6.418 13 C -0.097 4.097 14 N -0.238 5.238 15 C -0.050 4.050 16 C -0.148 4.148 17 C -0.058 4.058 18 C -0.137 4.137 19 C -0.072 4.072 20 N -0.197 5.197 21 H 0.251 0.749 22 C -0.015 4.015 23 C -0.156 4.156 24 C -0.119 4.119 25 C -0.168 4.168 26 C -0.082 4.082 27 C -0.098 4.098 28 C -0.104 4.104 29 C -0.076 4.076 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.229 0.771 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.187 0.813 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 28.845 -13.929 1.622 32.073 hybrid contribution 0.065 -0.249 0.831 0.870 sum 28.910 -14.177 2.453 32.292 Atomic orbital electron populations 1.69884 1.06216 1.27401 1.49533 1.24807 0.94802 0.99211 0.93887 0.86807 0.80558 0.83183 0.79075 1.19838 1.20962 1.18477 1.21103 0.88597 0.95186 1.53213 0.90287 1.19462 0.95120 0.78705 0.96725 1.46173 1.05664 1.10980 1.72975 1.20360 0.83031 0.90643 0.77505 1.90621 1.55208 1.46054 1.49909 1.22044 0.88910 0.95883 1.02864 1.62057 1.05618 1.20445 1.35637 1.21207 0.91803 1.02881 0.89094 1.22563 0.94959 0.97860 0.99372 1.18941 0.89294 0.99522 0.98053 1.19108 0.92181 0.95388 1.07048 1.21871 0.81952 1.00163 1.03214 1.41602 1.07417 1.18536 1.52113 0.74918 1.18244 0.95533 0.87906 0.99794 1.20003 0.95610 0.95863 1.04127 1.20803 0.97542 0.95155 0.98357 1.20688 0.92235 1.00723 1.03112 1.20386 0.99218 0.92515 0.96051 1.19126 0.91537 0.96039 1.03062 1.20436 0.93226 0.98386 0.98397 1.22266 0.95598 0.89303 1.00461 0.92293 0.95805 0.96164 0.77143 0.88023 0.92228 0.94198 0.87125 0.87264 0.81258 0.86498 0.85895 0.85970 0.85661 0.90127 0.91132 0.94494 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 10 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 11 C 0.50 9.40 7.58 -10.99 -0.08 9.32 16 12 O -0.54 -12.16 14.30 5.55 0.08 -12.08 16 13 C 0.03 0.47 5.44 -4.98 -0.03 0.44 16 14 N -0.51 -7.09 4.44 -237.48 -1.06 -8.15 16 15 C 0.08 1.08 5.22 -5.27 -0.03 1.05 16 16 C -0.13 -1.65 9.61 -36.43 -0.35 -2.00 16 17 C -0.06 -0.66 5.74 -102.85 -0.59 -1.25 16 18 C -0.13 -1.44 5.51 -103.28 -0.57 -2.01 16 19 C 0.05 0.45 11.80 -16.37 -0.19 0.26 16 20 N -0.59 -4.54 6.04 -10.39 -0.06 -4.60 16 21 H 0.41 1.78 8.96 -40.82 -0.37 1.41 16 22 C 0.09 0.93 7.26 -83.98 -0.61 0.32 16 23 C -0.14 -1.20 10.08 -39.41 -0.40 -1.60 16 24 C -0.10 -0.89 10.01 -39.55 -0.40 -1.28 16 25 C -0.15 -1.51 9.98 -39.93 -0.40 -1.91 16 26 C -0.06 -0.76 10.04 -39.71 -0.40 -1.15 16 27 C -0.09 -1.12 6.36 -104.95 -0.67 -1.79 16 28 C -0.07 -0.69 6.04 -27.94 -0.17 -0.86 16 29 C 0.05 0.54 5.59 -3.53 -0.02 0.52 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 33 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 34 H 0.10 1.18 7.93 -51.93 -0.41 0.76 16 35 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 36 H 0.04 0.51 8.06 -51.93 -0.42 0.10 16 37 H 0.11 1.89 5.97 -51.93 -0.31 1.58 16 38 H 0.11 1.38 7.98 -52.48 -0.42 0.96 16 39 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 47 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -34.33 387.35 -11.61 -45.95 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.82 Total: 6.10 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -5.36 Total: -9.65 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.69 Total: -53.06 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.33 -11.61 -45.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913041342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.855 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds