Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48505 * 109.46923 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.47400 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.47167 * 149.99942 * 3 2 1 7 7 C 1.37876 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00141 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00035 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47217 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00065 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47516 * 179.97438 * 13 11 10 15 15 C 1.46838 * 110.99854 * 66.04526 * 14 13 11 16 16 C 1.50170 * 110.24996 * 174.63822 * 15 14 13 17 17 C 1.31642 * 123.03813 * 342.94050 * 16 15 14 18 18 C 1.47594 * 118.67286 * 180.29395 * 17 16 15 19 19 C 1.35792 * 126.68464 * 104.97411 * 18 17 16 20 20 N 1.36452 * 109.72203 * 180.02562 * 19 18 17 21 21 H 0.97002 * 124.89521 * 179.97438 * 20 19 18 22 22 C 1.37809 * 110.20281 * 359.97438 * 20 19 18 23 23 C 1.39172 * 133.27948 * 180.02562 * 22 20 19 24 24 C 1.37763 * 119.78562 * 179.97438 * 23 22 20 25 25 C 1.38785 * 120.63607 * 359.97438 * 24 23 22 26 26 C 1.36705 * 120.47730 * 0.02562 * 25 24 23 27 27 C 1.39386 * 119.78782 * 359.97438 * 26 25 24 28 28 C 1.50336 * 122.65344 * 0.57176 * 17 16 15 29 29 C 1.47213 * 111.00476 * 189.05579 * 14 13 11 30 30 H 0.96996 * 119.99479 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47029 * 60.00633 * 9 7 2 32 32 H 1.08998 * 109.47625 * 300.00194 * 9 7 2 33 33 H 0.96995 * 120.00071 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.47461 * 59.99582 * 13 11 10 35 35 H 1.08998 * 109.47251 * 299.99872 * 13 11 10 36 36 H 1.08994 * 109.33950 * 54.39799 * 15 14 13 37 37 H 1.08997 * 109.34005 * 294.87543 * 15 14 13 38 38 H 1.08004 * 118.48286 * 162.91988 * 16 15 14 39 39 H 1.08000 * 125.13563 * 0.05007 * 19 18 17 40 40 H 1.08000 * 120.11060 * 0.02562 * 23 22 20 41 41 H 1.07992 * 119.68216 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.76533 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.11111 * 179.72840 * 26 25 24 44 44 H 1.09001 * 109.43028 * 103.28163 * 28 17 16 45 45 H 1.08997 * 109.43199 * 223.13427 * 28 17 16 46 46 H 1.09004 * 109.63069 * 286.94729 * 29 14 13 47 47 H 1.09000 * 109.62423 * 47.51541 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3249 -2.8217 0.0001 12 8 6.1131 -1.8998 -0.0004 13 6 5.8272 -4.2424 -0.0003 14 7 7.2962 -4.2424 -0.0008 15 6 7.8228 -3.6861 1.2520 16 6 9.3186 -3.8136 1.2890 17 6 9.9897 -4.6238 0.4977 18 6 11.4595 -4.6773 0.6209 19 6 12.1899 -5.6672 1.1957 20 7 13.5180 -5.3631 1.1197 21 1 14.2351 -5.9190 1.4628 22 6 13.6934 -4.1523 0.4854 23 6 14.8182 -3.4012 0.1573 24 6 14.6704 -2.1969 -0.4950 25 6 13.4093 -1.7239 -0.8297 26 6 12.2921 -2.4467 -0.5164 27 6 12.4198 -3.6677 0.1436 28 6 9.3200 -5.4922 -0.5306 29 6 7.8237 -5.5996 -0.2175 30 1 -0.4849 0.8401 -0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8746 -0.6809 -0.8905 33 1 3.3695 -3.3126 0.0001 34 1 5.4640 -4.7560 -0.8905 35 1 5.4639 -4.7565 0.8894 36 1 7.3934 -4.2266 2.0955 37 1 7.5483 -2.6337 1.3231 38 1 9.8694 -3.2125 1.9975 39 1 11.7814 -6.5605 1.6447 40 1 15.8037 -3.7617 0.4126 41 1 15.5444 -1.6156 -0.7491 42 1 13.3098 -0.7781 -1.3415 43 1 11.3134 -2.0709 -0.7757 44 1 9.4564 -5.0543 -1.5194 45 1 9.7652 -6.4869 -0.5107 46 1 7.6759 -6.1979 0.6815 47 1 7.3073 -6.0632 -1.0581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913041342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = 21.667195 kcal Electronic energy + Delta-G solvation = -27859.239532 eV Core-core repulsion = 24006.411321 eV Total energy + Delta-G solvation = -3852.828211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.14433 -40.86912 -39.28748 -37.79460 -36.14409 -35.21920 -34.38706 -32.43100 -31.67696 -30.68476 -30.25901 -29.56931 -27.73994 -25.05592 -24.13721 -23.76993 -23.40706 -22.60575 -21.42988 -21.10406 -19.14325 -19.06875 -18.27626 -17.70952 -17.33479 -17.12055 -16.58020 -16.47956 -16.14521 -15.94056 -15.77684 -15.37493 -15.18066 -15.00362 -14.74486 -14.61428 -14.56012 -14.22777 -14.10462 -13.94033 -13.59615 -13.27692 -13.16824 -12.98254 -12.72887 -12.61599 -12.59455 -12.43062 -12.18130 -11.93976 -11.91244 -11.64723 -11.41368 -10.91673 -10.65108 -10.55500 -9.88532 -9.70459 -9.20371 -9.16469 -8.51265 -8.40004 -6.46377 0.19617 0.68095 1.18555 1.32168 1.34474 1.47217 1.75770 1.79787 2.26319 2.27658 2.34576 2.95388 2.97578 3.08145 3.76165 3.83186 3.94793 3.98601 4.12036 4.22620 4.26446 4.34462 4.39907 4.45244 4.48386 4.52629 4.56812 4.60698 4.70460 4.77298 4.81123 4.82836 4.92351 5.01789 5.04550 5.14389 5.16257 5.24129 5.27495 5.48533 5.56011 5.57506 5.69063 5.78577 5.79184 6.02130 6.08998 6.14497 6.17479 6.23458 6.54928 6.73466 6.91441 7.17120 7.49523 8.74599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002116 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.847462 B =13226.857778 C =14483.036903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.234 3.766 10 N -0.708 5.708 11 C 0.497 3.503 12 O -0.581 6.581 13 C 0.046 3.954 14 N -0.536 5.536 15 C 0.085 3.915 16 C -0.154 4.154 17 C -0.038 4.038 18 C -0.174 4.174 19 C 0.081 3.919 20 N -0.580 5.580 21 H 0.433 0.567 22 C 0.077 3.923 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.097 4.097 27 C -0.120 4.120 28 C -0.067 4.067 29 C 0.054 3.946 30 H 0.272 0.728 31 H 0.009 0.991 32 H 0.008 0.992 33 H 0.409 0.591 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.206 0.794 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.054 0.946 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.800 -17.399 2.149 35.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.110 3.890 10 N -0.359 5.359 11 C 0.284 3.716 12 O -0.461 6.461 13 C -0.084 4.084 14 N -0.262 5.262 15 C -0.042 4.042 16 C -0.172 4.172 17 C -0.039 4.039 18 C -0.181 4.181 19 C -0.047 4.047 20 N -0.183 5.183 21 H 0.273 0.727 22 C -0.030 4.030 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.104 4.104 29 C -0.073 4.073 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.244 0.756 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.223 0.777 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.149 0.851 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.072 0.928 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 31.438 -16.433 1.822 35.520 hybrid contribution -0.649 0.440 0.760 1.092 sum 30.789 -15.992 2.582 34.790 Atomic orbital electron populations 1.69978 1.07587 1.28552 1.50791 1.25589 0.95551 1.02600 0.93692 0.85875 0.79196 0.79513 0.79393 1.19102 1.19748 1.18708 1.21305 0.89960 0.94602 1.52409 0.92058 1.19033 0.93278 0.81297 0.95363 1.46018 1.06812 1.09536 1.73531 1.21343 0.81866 0.92733 0.75632 1.90617 1.56051 1.48078 1.51359 1.22007 0.89056 0.91902 1.05466 1.61980 1.05661 1.22925 1.35595 1.20964 0.92710 1.00670 0.89843 1.22424 0.94355 0.99480 1.00988 1.19126 0.89880 0.98264 0.96658 1.19221 0.92005 0.96852 1.10064 1.22346 0.81798 0.99927 1.00616 1.41620 1.07892 1.17809 1.50995 0.72712 1.18442 0.95198 0.88952 1.00388 1.20397 0.96577 0.95346 1.02711 1.21139 0.97694 0.95653 0.98147 1.20915 0.92568 1.00936 1.02805 1.20384 0.98934 0.93851 0.98372 1.19404 0.93095 0.96297 1.03613 1.20509 0.93459 0.99449 0.97022 1.22372 0.95446 0.87515 1.01962 0.91871 0.97264 0.97442 0.75554 0.85121 0.89480 0.93251 0.91225 0.88359 0.77710 0.83495 0.83170 0.85068 0.87916 0.91528 0.88261 0.92807 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 2 C 0.03 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.94 45.01 27.47 68.60 1.88 46.90 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -12.63 6.54 99.48 0.65 -11.98 16 7 C -0.54 -30.37 9.83 25.60 0.25 -30.12 16 8 H 0.06 3.56 7.84 -2.91 -0.02 3.53 16 9 C 0.23 11.71 4.50 85.63 0.38 12.10 16 10 N -0.71 -28.37 5.55 -466.78 -2.59 -30.96 16 11 C 0.50 18.69 7.58 87.65 0.66 19.35 16 12 O -0.58 -27.02 14.30 -3.05 -0.04 -27.07 16 13 C 0.05 1.18 5.44 85.55 0.47 1.64 16 14 N -0.54 -14.31 4.44 -905.26 -4.02 -18.33 16 15 C 0.09 2.45 5.22 85.40 0.45 2.90 16 16 C -0.15 -4.07 9.61 24.88 0.24 -3.83 16 17 C -0.04 -0.87 5.74 -18.15 -0.10 -0.98 16 18 C -0.17 -3.73 5.51 -19.00 -0.10 -3.83 16 19 C 0.08 1.12 11.80 83.41 0.98 2.11 16 20 N -0.58 -7.19 6.04 -186.79 -1.13 -8.32 16 21 H 0.43 2.11 8.96 -92.71 -0.83 1.28 16 22 C 0.08 1.45 7.26 38.98 0.28 1.74 16 23 C -0.13 -2.03 10.08 22.38 0.23 -1.80 16 24 C -0.11 -1.77 10.01 22.29 0.22 -1.54 16 25 C -0.15 -3.20 9.98 22.04 0.22 -2.98 16 26 C -0.10 -2.49 10.04 22.19 0.22 -2.26 16 27 C -0.12 -2.90 6.36 -20.07 -0.13 -3.03 16 28 C -0.07 -1.27 6.04 29.81 0.18 -1.09 16 29 C 0.05 0.99 5.59 86.32 0.48 1.47 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 32 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 33 H 0.41 14.02 8.32 -92.71 -0.77 13.25 16 34 H 0.13 2.60 7.93 -2.39 -0.02 2.58 16 35 H 0.09 1.79 8.06 -2.39 -0.02 1.77 16 36 H 0.05 1.26 8.06 -2.39 -0.02 1.24 16 37 H 0.07 2.56 5.97 -2.39 -0.01 2.54 16 38 H 0.10 2.71 7.98 -2.91 -0.02 2.69 16 39 H 0.21 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.10 2.93 8.06 -2.91 -0.02 2.90 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 0.84 8.08 -2.38 -0.02 0.82 16 47 H 0.10 1.42 7.91 -2.39 -0.02 1.40 16 Total: -1.00 -77.81 387.35 -0.86 -78.67 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.66 Total: 22.99 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.40 Total: -8.22 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -7.44 Total: -113.26 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.04 Total: -27.07 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -77.81 -0.86 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913041342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.333 kcal (2) G-P(sol) polarization free energy of solvation -77.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds