Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47377 * 270.00338 * 3 2 1 5 5 H 1.48506 * 109.47140 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47421 * 150.00155 * 3 2 1 7 7 C 1.38824 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21648 * 119.99887 * 359.97438 * 17 16 15 19 19 C 1.47056 * 120.00179 * 179.97438 * 17 16 15 20 20 C 1.35865 * 125.43322 * 180.02562 * 19 17 16 21 21 C 1.41581 * 107.73028 * 179.97438 * 20 19 17 22 22 C 1.40101 * 133.38214 * 180.02562 * 21 20 19 23 23 C 1.36439 * 119.83149 * 180.02562 * 22 21 20 24 24 C 1.38940 * 120.61617 * 0.02562 * 23 22 21 25 25 C 1.37670 * 120.64791 * 359.97438 * 24 23 22 26 26 C 1.39227 * 119.80895 * 0.02562 * 25 24 23 27 27 N 1.37479 * 133.17844 * 180.29142 * 26 25 24 28 28 H 0.97003 * 125.60672 * 359.97438 * 27 26 25 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 120.00000 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.07999 * 126.13390 * 0.02562 * 20 19 17 42 42 H 1.08002 * 120.07972 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.68973 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.67398 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.08955 * 180.02562 * 25 24 23 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09000 * 113.66011 * 36.14689 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.2580 -4.8292 -0.5979 12 6 1.8336 -5.6839 0.5319 13 6 2.0040 -4.4004 1.3453 14 6 3.0118 -6.6275 0.2879 15 6 2.4306 -7.5039 1.4123 16 7 2.9353 -7.1598 2.7439 17 6 3.8103 -7.9757 3.3645 18 8 4.1806 -8.9981 2.8192 19 6 4.3173 -7.6300 4.7009 20 6 5.1988 -8.3687 5.4243 21 6 5.4272 -7.6920 6.6468 22 6 6.2237 -7.9687 7.7656 23 6 6.2359 -7.1037 8.8208 24 6 5.4642 -5.9486 8.7978 25 6 4.6732 -5.6546 7.7100 26 6 4.6439 -6.5216 6.6210 27 7 3.9762 -6.5005 5.4194 28 1 3.3650 -5.8071 5.1250 29 6 1.0608 -6.8784 1.0923 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0002 32 1 3.0650 -3.5645 -0.4086 33 1 1.5959 -5.1300 -1.5896 34 1 0.1776 -4.6978 -0.5401 35 1 1.1333 -4.1470 1.9502 36 1 2.9378 -4.3584 1.9060 37 1 2.9946 -7.1047 -0.6918 38 1 3.9802 -6.1901 0.5306 39 1 2.4816 -8.5724 1.2029 40 1 2.6397 -6.3448 3.1788 41 1 5.6458 -9.3038 5.1208 42 1 6.8267 -8.8643 7.7927 43 1 6.8505 -7.3195 9.6822 44 1 5.4850 -5.2748 9.6415 45 1 4.0772 -4.7540 7.7015 46 1 0.4706 -6.6412 1.9775 47 1 0.4951 -7.4260 0.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965907954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = 58.326615 kcal Electronic energy + Delta-G solvation = -28128.072749 eV Core-core repulsion = 24276.834209 eV Total energy + Delta-G solvation = -3851.238540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.64566 -41.73225 -40.09153 -37.73622 -37.25861 -35.23086 -33.74621 -33.12670 -31.55437 -30.42388 -29.95185 -26.79703 -26.62459 -26.33318 -25.41224 -23.50491 -23.14918 -22.26969 -21.30868 -21.23165 -19.59955 -19.33383 -18.76058 -18.19486 -17.14883 -16.95444 -16.72996 -16.43371 -16.16149 -15.82557 -15.75101 -15.30428 -15.15520 -15.05746 -14.87635 -14.68632 -14.34882 -13.95900 -13.86357 -13.68517 -13.42515 -13.03599 -12.98778 -12.83823 -12.62652 -12.58401 -12.44993 -12.26691 -12.10664 -11.85350 -11.84147 -11.47657 -11.15939 -11.07345 -10.92913 -10.87435 -10.71019 -10.19789 -9.26290 -8.98785 -8.79822 -7.96619 -5.24305 -0.27633 0.65652 1.04058 1.45633 1.46713 1.54960 1.79613 1.98271 2.19535 2.54564 2.94626 3.34892 3.46778 3.52643 3.60094 3.64143 3.72787 3.83677 3.95510 4.08897 4.19930 4.27493 4.32077 4.34799 4.45755 4.54674 4.58116 4.60861 4.76598 4.82534 4.83616 4.86985 4.92391 4.94910 4.99834 5.06426 5.08411 5.12817 5.19387 5.37456 5.43761 5.51431 5.54318 5.60098 5.65227 5.68635 5.70120 6.10970 6.26233 6.28021 6.43276 6.94100 7.32124 8.10241 8.32795 9.26606 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.002625 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.572253 B =10662.976127 C =13007.621247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.727 5.727 10 C 0.146 3.854 11 C -0.130 4.130 12 C -0.092 4.092 13 C -0.133 4.133 14 C -0.122 4.122 15 C 0.123 3.877 16 N -0.696 5.696 17 C 0.588 3.412 18 O -0.557 6.557 19 C 0.002 3.998 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.071 4.071 23 C -0.150 4.150 24 C -0.086 4.086 25 C -0.146 4.146 26 C 0.100 3.900 27 N -0.571 5.571 28 H 0.427 0.573 29 C -0.119 4.119 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.406 0.594 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.138 0.862 46 H 0.077 0.923 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -18.454 15.441 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.365 5.365 10 C 0.037 3.963 11 C -0.168 4.168 12 C -0.092 4.092 13 C -0.174 4.174 14 C -0.161 4.161 15 C 0.019 3.981 16 N -0.346 5.346 17 C 0.376 3.624 18 O -0.436 6.436 19 C -0.107 4.107 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.090 4.090 23 C -0.169 4.169 24 C -0.105 4.105 25 C -0.166 4.166 26 C -0.010 4.010 27 N -0.177 5.177 28 H 0.267 0.733 29 C -0.157 4.157 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.242 0.758 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.156 0.844 46 H 0.095 0.905 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.197 -18.954 14.900 25.804 hybrid contribution -0.609 1.992 -0.275 2.101 sum 8.588 -16.962 14.625 23.987 Atomic orbital electron populations 1.69801 1.06533 1.26021 1.59631 1.25527 0.96351 1.00977 1.03907 0.85200 0.77759 0.79791 0.77393 1.21570 1.22187 1.19508 1.19663 0.91362 0.85514 1.40865 0.90907 1.42589 1.05333 1.00997 1.87581 1.21883 0.95113 0.84003 0.95332 1.23154 0.99793 0.95838 0.98054 1.22202 0.97530 0.92302 0.97215 1.23370 1.00716 0.94903 0.98374 1.23183 0.96945 0.96260 0.99681 1.21911 0.95294 0.99762 0.81175 1.45551 1.44953 1.25373 1.18743 1.17302 0.78583 0.83097 0.83460 1.90816 1.59627 1.26669 1.66478 1.20006 1.05005 0.91574 0.94163 1.21080 0.99119 1.00836 0.93198 1.18468 1.02883 0.96590 0.96844 1.20715 0.96810 1.00126 0.91352 1.21028 1.01388 0.94998 0.99488 1.21317 0.94416 0.97316 0.97465 1.20429 1.03846 0.99989 0.92360 1.18666 0.96437 0.97865 0.88065 1.41912 1.40709 1.20718 1.14344 0.73349 1.23154 0.95015 0.95666 1.01819 0.94033 0.79413 0.91658 0.91209 0.90779 0.90949 0.92357 0.87345 0.92028 0.87865 0.75835 0.82457 0.84093 0.83241 0.82898 0.84439 0.90460 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.66 0.28 -58.30 16 2 C -0.08 -4.28 5.50 84.87 0.47 -3.81 16 3 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.24 -13.25 9.97 84.04 0.84 -12.41 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.73 -35.75 5.40 -319.92 -1.73 -37.48 16 10 C 0.15 5.48 4.48 45.63 0.20 5.69 16 11 C -0.13 -3.87 7.59 30.89 0.23 -3.64 16 12 C -0.09 -2.20 1.02 -52.31 -0.05 -2.25 16 13 C -0.13 -3.99 6.97 30.88 0.22 -3.77 16 14 C -0.12 -2.65 7.64 30.88 0.24 -2.41 16 15 C 0.12 2.51 4.32 45.63 0.20 2.71 16 16 N -0.70 -14.29 5.25 -443.12 -2.33 -16.62 16 17 C 0.59 14.47 7.80 86.55 0.68 15.15 16 18 O -0.56 -17.10 16.44 -4.18 -0.07 -17.17 16 19 C 0.00 0.05 6.97 39.91 0.28 0.33 16 20 C -0.11 -2.59 10.53 22.54 0.24 -2.35 16 21 C -0.14 -2.99 6.16 -21.36 -0.13 -3.13 16 22 C -0.07 -1.16 10.06 22.30 0.22 -0.93 16 23 C -0.15 -1.96 9.97 22.02 0.22 -1.74 16 24 C -0.09 -1.13 10.01 22.30 0.22 -0.91 16 25 C -0.15 -2.37 10.08 22.37 0.23 -2.14 16 26 C 0.10 2.01 7.25 39.14 0.28 2.29 16 27 N -0.57 -10.85 6.07 -177.19 -1.08 -11.92 16 28 H 0.43 6.23 8.12 -92.71 -0.75 5.48 16 29 C -0.12 -2.26 7.59 30.88 0.23 -2.02 16 30 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.37 19.74 7.92 -92.71 -0.73 19.00 16 32 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 2.20 7.47 -2.38 -0.02 2.18 16 40 H 0.41 7.18 7.06 -92.71 -0.65 6.53 16 41 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.04 391.16 0.79 -69.25 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -1.12 Total: 39.93 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.81 Total: -15.35 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -4.85 Total: -124.32 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.07 Total: -17.17 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -70.04 0.79 -69.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965907954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.578 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds