Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00328 * 2 1 4 4 H 1.48503 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47170 * 300.00642 * 3 2 1 6 6 H 1.48503 * 109.47036 * 60.00285 * 3 2 1 7 7 C 1.38813 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99704 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00599 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47144 * 325.00312 * 10 9 7 12 12 C 1.53005 * 109.47079 * 84.99885 * 10 9 7 13 13 C 1.52995 * 109.47346 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46992 * 300.00170 * 13 12 10 15 15 C 1.53005 * 109.47214 * 59.99749 * 14 13 12 16 16 H 1.09005 * 109.46940 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.46789 * 60.00133 * 15 14 13 18 18 C 1.34779 * 120.00058 * 85.00102 * 17 15 14 19 19 O 1.21600 * 119.99990 * 359.97438 * 18 17 15 20 20 C 1.47433 * 120.00265 * 179.97438 * 18 17 15 21 21 C 1.38744 * 120.33056 * 0.48374 * 20 18 17 22 22 C 1.38874 * 120.72486 * 180.02562 * 21 20 18 23 23 C 1.36346 * 121.05620 * 359.71505 * 22 21 20 24 24 C 1.40436 * 120.09023 * 0.02762 * 23 22 21 25 25 C 1.40801 * 121.27074 * 179.97438 * 24 23 22 26 26 C 1.36638 * 118.15487 * 180.02562 * 25 24 23 27 27 C 1.39235 * 119.90948 * 0.02562 * 26 25 24 28 28 N 1.31226 * 121.69247 * 0.02562 * 27 26 25 29 29 C 1.33347 * 121.35597 * 359.95455 * 28 27 26 30 30 C 1.52991 * 109.47028 * 300.00165 * 15 14 13 31 31 H 0.97002 * 119.99642 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99562 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.46784 * 60.00207 * 12 10 9 34 34 H 1.09005 * 109.46940 * 300.00436 * 12 10 9 35 35 H 1.08992 * 109.47391 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.46994 * 59.99708 * 13 12 10 37 37 H 1.09006 * 109.46873 * 299.99612 * 14 13 12 38 38 H 1.08998 * 109.47321 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00440 * 264.99327 * 17 15 14 40 40 H 1.08003 * 119.64151 * 359.79564 * 21 20 18 41 41 H 1.08002 * 119.46965 * 179.74256 * 22 21 20 42 42 H 1.08008 * 119.95536 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.92471 * 0.04923 * 25 24 23 44 44 H 1.08002 * 120.04161 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.15264 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47129 * 179.97438 * 30 15 14 47 47 H 1.09006 * 109.47275 * 299.99628 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9686 -3.5501 -0.5920 12 6 2.4218 -4.0369 1.4340 13 6 3.1873 -5.3616 1.4328 14 6 2.3105 -6.4567 0.8220 15 6 1.9467 -6.0766 -0.6147 16 1 1.3224 -6.8570 -1.0500 17 7 3.1707 -5.9326 -1.4066 18 6 3.7376 -7.0158 -1.9738 19 8 3.2334 -8.1127 -1.8279 20 6 4.9692 -6.8709 -2.7713 21 6 5.5559 -5.6242 -2.9339 22 6 6.7157 -5.4782 -3.6838 23 6 7.3114 -6.5530 -4.2743 24 6 6.7539 -7.8340 -4.1308 25 6 7.3481 -8.9610 -4.7303 26 6 6.7516 -10.1770 -4.5497 27 6 5.5886 -10.2739 -3.7903 28 7 5.0384 -9.2201 -3.2345 29 6 5.5709 -8.0054 -3.3721 30 6 1.1813 -4.7519 -0.6135 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.5111 -4.1437 2.0233 34 1 3.0468 -3.2569 1.8690 35 1 3.4461 -5.6326 2.4563 36 1 4.0980 -5.2545 0.8435 37 1 1.3998 -6.5639 1.4113 38 1 2.8557 -7.4006 0.8216 39 1 3.5731 -5.0577 -1.5228 40 1 5.1037 -4.7571 -2.4754 41 1 7.1529 -4.4976 -3.8006 42 1 8.2133 -6.4192 -4.8533 43 1 8.2504 -8.8671 -5.3162 44 1 7.1817 -11.0617 -4.9955 45 1 5.1276 -11.2411 -3.6551 46 1 0.9224 -4.4809 -1.6370 47 1 0.2705 -4.8590 -0.0242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981205860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = 28.568744 kcal Electronic energy + Delta-G solvation = -29014.624036 eV Core-core repulsion = 25162.095098 eV Total energy + Delta-G solvation = -3852.528938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.19822 -39.77874 -37.84614 -37.09745 -34.42832 -33.67602 -32.99629 -31.17242 -30.83899 -30.63560 -29.14777 -27.82556 -24.90286 -23.89620 -23.70190 -23.47943 -21.99714 -21.07153 -20.63862 -18.94048 -18.33952 -18.03598 -17.19451 -16.95412 -16.26095 -15.45992 -15.34723 -14.97258 -14.94422 -14.45494 -14.29635 -14.21117 -14.15140 -13.55585 -13.50899 -13.28533 -13.20007 -13.02658 -12.42978 -12.36893 -12.07058 -11.94692 -11.78408 -11.73367 -11.56982 -11.00611 -10.91255 -10.76950 -10.72415 -10.34661 -10.17012 -10.14451 -9.98366 -9.73376 -9.50550 -9.24844 -9.08401 -8.92417 -8.78530 -8.49838 -6.98030 -5.79205 -3.07970 -0.09433 0.54777 1.51454 2.53355 3.24261 3.26975 3.40518 3.45741 3.48442 3.97824 4.04396 4.28650 4.43236 4.53374 4.55469 4.60976 4.73314 4.83802 5.00398 5.06616 5.16063 5.19204 5.23206 5.39048 5.50713 5.59043 5.62248 5.64286 5.72521 5.73964 5.81034 5.90363 5.92390 6.01819 6.05174 6.10588 6.14590 6.19284 6.31143 6.33738 6.50321 6.53003 6.60075 6.74336 6.76546 6.95433 7.09912 7.66680 7.68789 7.82750 8.39219 8.45145 9.50482 10.08551 10.42970 11.43469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002782 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.455989 B =10063.805763 C =11358.334232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.181 3.819 11 H 0.040 0.960 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.154 3.846 16 H 0.085 0.915 17 N -0.718 5.718 18 C 0.552 3.448 19 O -0.505 6.505 20 C -0.106 4.106 21 C -0.061 4.061 22 C -0.122 4.122 23 C -0.075 4.075 24 C -0.112 4.112 25 C -0.059 4.059 26 C -0.177 4.177 27 C 0.129 3.871 28 N -0.436 5.436 29 C 0.161 3.839 30 C -0.134 4.134 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.399 0.601 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.159 0.841 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.490 -18.426 -8.648 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.050 3.950 16 H 0.103 0.897 17 N -0.372 5.372 18 C 0.338 3.662 19 O -0.380 6.380 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.140 4.140 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.085 4.085 26 C -0.197 4.197 27 C -0.044 4.044 28 N -0.142 5.142 29 C 0.038 3.962 30 C -0.173 4.173 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.176 0.824 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.419 -19.042 -8.013 25.194 hybrid contribution 1.207 1.557 -0.510 2.035 sum 15.626 -17.485 -8.524 24.951 Atomic orbital electron populations 1.69669 1.05098 1.25525 1.57702 1.24742 0.95496 0.97669 1.03081 0.86155 0.78758 0.84299 0.77192 1.20584 1.21916 1.21909 1.19253 0.90932 0.84104 1.42584 0.91208 1.42434 1.05812 0.99698 1.88564 1.20134 0.93833 0.85979 0.92922 0.94251 1.22283 0.99787 0.95186 1.00433 1.21500 0.98485 0.95643 0.99688 1.21896 1.00513 0.98613 0.95556 1.20924 0.85064 0.98277 0.90764 0.89739 1.46153 1.28222 1.10097 1.52718 1.17895 0.83805 0.84821 0.79710 1.90825 1.62492 1.25088 1.59565 1.19994 0.97272 0.92412 1.01326 1.21578 0.94644 0.96397 0.95529 1.20896 0.95785 0.99662 0.97664 1.21162 0.99166 0.91172 0.97868 1.18841 0.96904 0.95134 1.00530 1.21455 0.98833 0.91729 0.96511 1.21958 0.97884 0.98702 1.01147 1.23182 0.91923 0.97861 0.91395 1.68329 1.30118 0.97779 1.18022 1.18621 0.91320 0.91610 0.94635 1.22131 0.99290 0.93624 1.02206 0.93562 0.78240 0.92533 0.92135 0.92910 0.92705 0.91195 0.92037 0.76432 0.84433 0.84558 0.84868 0.84322 0.84522 0.82369 0.91239 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.36 5.12 -53.43 -0.27 -17.63 16 10 C 0.18 3.36 2.60 -67.93 -0.18 3.18 16 11 H 0.04 0.72 6.44 -51.93 -0.33 0.38 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.66 5.77 -26.73 -0.15 -1.81 16 14 C -0.13 -1.79 5.60 -26.73 -0.15 -1.94 16 15 C 0.15 2.25 2.78 -67.94 -0.19 2.06 16 16 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 17 N -0.72 -10.08 4.18 -54.88 -0.23 -10.31 16 18 C 0.55 8.57 7.73 -12.52 -0.10 8.48 16 19 O -0.50 -9.39 14.85 5.28 0.08 -9.31 16 20 C -0.11 -1.44 5.91 -104.61 -0.62 -2.06 16 21 C -0.06 -0.65 9.52 -39.16 -0.37 -1.02 16 22 C -0.12 -1.05 9.93 -40.03 -0.40 -1.45 16 23 C -0.07 -0.61 9.75 -39.44 -0.38 -1.00 16 24 C -0.11 -1.16 5.74 -106.82 -0.61 -1.78 16 25 C -0.06 -0.46 9.90 -39.19 -0.39 -0.85 16 26 C -0.18 -1.34 10.03 -39.79 -0.40 -1.74 16 27 C 0.13 1.32 11.15 -17.44 -0.19 1.13 16 28 N -0.44 -6.28 8.44 -10.76 -0.09 -6.37 16 29 C 0.16 2.19 6.61 -84.58 -0.56 1.64 16 30 C -0.13 -2.14 5.08 -26.74 -0.14 -2.27 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.78 7.60 -51.93 -0.39 0.38 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 5.16 4.89 -40.82 -0.20 4.96 16 40 H 0.14 1.28 6.37 -52.48 -0.33 0.94 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -34.11 379.63 -10.91 -45.02 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.59 Total: 11.85 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -5.22 Total: -8.91 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.13 Total: -61.24 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.11 -10.91 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.586 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds