Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00328 * 2 1 4 4 H 1.48503 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47170 * 300.00642 * 3 2 1 6 6 H 1.48503 * 109.47036 * 60.00285 * 3 2 1 7 7 C 1.38813 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99704 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00599 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47144 * 325.00312 * 10 9 7 12 12 C 1.53005 * 109.47079 * 84.99885 * 10 9 7 13 13 C 1.52995 * 109.47346 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46992 * 300.00170 * 13 12 10 15 15 C 1.53005 * 109.47214 * 59.99749 * 14 13 12 16 16 H 1.09005 * 109.46940 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.46789 * 60.00133 * 15 14 13 18 18 C 1.34779 * 120.00058 * 85.00102 * 17 15 14 19 19 O 1.21600 * 119.99990 * 359.97438 * 18 17 15 20 20 C 1.47433 * 120.00265 * 179.97438 * 18 17 15 21 21 C 1.38744 * 120.33056 * 0.48374 * 20 18 17 22 22 C 1.38874 * 120.72486 * 180.02562 * 21 20 18 23 23 C 1.36346 * 121.05620 * 359.71505 * 22 21 20 24 24 C 1.40436 * 120.09023 * 0.02762 * 23 22 21 25 25 C 1.40801 * 121.27074 * 179.97438 * 24 23 22 26 26 C 1.36638 * 118.15487 * 180.02562 * 25 24 23 27 27 C 1.39235 * 119.90948 * 0.02562 * 26 25 24 28 28 N 1.31226 * 121.69247 * 0.02562 * 27 26 25 29 29 C 1.33347 * 121.35597 * 359.95455 * 28 27 26 30 30 C 1.52991 * 109.47028 * 300.00165 * 15 14 13 31 31 H 0.97002 * 119.99642 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99562 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.46784 * 60.00207 * 12 10 9 34 34 H 1.09005 * 109.46940 * 300.00436 * 12 10 9 35 35 H 1.08992 * 109.47391 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.46994 * 59.99708 * 13 12 10 37 37 H 1.09006 * 109.46873 * 299.99612 * 14 13 12 38 38 H 1.08998 * 109.47321 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00440 * 264.99327 * 17 15 14 40 40 H 1.08003 * 119.64151 * 359.79564 * 21 20 18 41 41 H 1.08002 * 119.46965 * 179.74256 * 22 21 20 42 42 H 1.08008 * 119.95536 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.92471 * 0.04923 * 25 24 23 44 44 H 1.08002 * 120.04161 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.15264 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47129 * 179.97438 * 30 15 14 47 47 H 1.09006 * 109.47275 * 299.99628 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9686 -3.5501 -0.5920 12 6 2.4218 -4.0369 1.4340 13 6 3.1873 -5.3616 1.4328 14 6 2.3105 -6.4567 0.8220 15 6 1.9467 -6.0766 -0.6147 16 1 1.3224 -6.8570 -1.0500 17 7 3.1707 -5.9326 -1.4066 18 6 3.7376 -7.0158 -1.9738 19 8 3.2334 -8.1127 -1.8279 20 6 4.9692 -6.8709 -2.7713 21 6 5.5559 -5.6242 -2.9339 22 6 6.7157 -5.4782 -3.6838 23 6 7.3114 -6.5530 -4.2743 24 6 6.7539 -7.8340 -4.1308 25 6 7.3481 -8.9610 -4.7303 26 6 6.7516 -10.1770 -4.5497 27 6 5.5886 -10.2739 -3.7903 28 7 5.0384 -9.2201 -3.2345 29 6 5.5709 -8.0054 -3.3721 30 6 1.1813 -4.7519 -0.6135 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.5111 -4.1437 2.0233 34 1 3.0468 -3.2569 1.8690 35 1 3.4461 -5.6326 2.4563 36 1 4.0980 -5.2545 0.8435 37 1 1.3998 -6.5639 1.4113 38 1 2.8557 -7.4006 0.8216 39 1 3.5731 -5.0577 -1.5228 40 1 5.1037 -4.7571 -2.4754 41 1 7.1529 -4.4976 -3.8006 42 1 8.2133 -6.4192 -4.8533 43 1 8.2504 -8.8671 -5.3162 44 1 7.1817 -11.0617 -4.9955 45 1 5.1276 -11.2411 -3.6551 46 1 0.9224 -4.4809 -1.6370 47 1 0.2705 -4.8590 -0.0242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981205860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 7.500300 kcal Electronic energy + Delta-G solvation = -29015.537632 eV Core-core repulsion = 25162.095098 eV Total energy + Delta-G solvation = -3853.442534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.00389 -40.92442 -39.10433 -37.89233 -36.11746 -34.55960 -34.26761 -32.92854 -31.70840 -31.43694 -30.33896 -29.43406 -25.77772 -25.57620 -24.58264 -24.36139 -23.27171 -22.51192 -21.69844 -20.16659 -19.27310 -19.18421 -18.70754 -17.76451 -17.23763 -16.77156 -16.53150 -16.29556 -15.97461 -15.67743 -15.42508 -15.27905 -15.04283 -14.93054 -14.87361 -14.66312 -14.07519 -13.88987 -13.83632 -13.51927 -13.11407 -13.07187 -12.98766 -12.88282 -12.80420 -12.71777 -12.28555 -12.19746 -12.01191 -11.95022 -11.60931 -11.47280 -11.45505 -11.04826 -11.00310 -10.83641 -10.11504 -10.00629 -9.79829 -9.26687 -8.97296 -7.90821 -5.18836 -0.82286 -0.16060 0.77594 1.49472 1.49933 1.59550 1.79314 2.17557 2.26291 2.58443 3.18118 3.34390 3.42813 3.53608 3.68843 3.76997 3.86348 3.88698 3.92242 3.98421 4.06894 4.19369 4.29452 4.30062 4.35436 4.44324 4.50357 4.55974 4.65310 4.69864 4.72160 4.81854 4.92937 4.94429 4.99738 5.09158 5.12232 5.17908 5.21630 5.23033 5.36966 5.37452 5.50530 5.51758 5.55844 5.57711 5.67740 5.84830 6.31188 6.57617 7.08236 7.31693 7.37435 8.13593 8.36385 9.33030 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002782 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.455989 B =10063.805763 C =11358.334232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.179 3.821 11 H 0.046 0.954 12 C -0.126 4.126 13 C -0.104 4.104 14 C -0.121 4.121 15 C 0.161 3.839 16 H 0.077 0.923 17 N -0.712 5.712 18 C 0.551 3.449 19 O -0.546 6.546 20 C -0.149 4.149 21 C -0.052 4.052 22 C -0.133 4.133 23 C -0.055 4.055 24 C -0.131 4.131 25 C -0.051 4.051 26 C -0.175 4.175 27 C 0.119 3.881 28 N -0.496 5.496 29 C 0.132 3.868 30 C -0.121 4.121 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.404 0.596 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.181 0.819 44 H 0.175 0.825 45 H 0.173 0.827 46 H 0.061 0.939 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.158 -18.856 -10.017 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.226 1.226 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.071 3.929 11 H 0.064 0.936 12 C -0.167 4.167 13 C -0.142 4.142 14 C -0.159 4.159 15 C 0.056 3.944 16 H 0.095 0.905 17 N -0.366 5.366 18 C 0.339 3.661 19 O -0.424 6.424 20 C -0.153 4.153 21 C -0.072 4.072 22 C -0.151 4.151 23 C -0.073 4.073 24 C -0.133 4.133 25 C -0.076 4.076 26 C -0.195 4.195 27 C -0.053 4.053 28 N -0.204 5.204 29 C 0.010 3.990 30 C -0.159 4.159 31 H 0.057 0.943 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.199 0.801 44 H 0.192 0.808 45 H 0.190 0.810 46 H 0.080 0.920 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.142 -19.495 -9.383 28.235 hybrid contribution 0.155 1.558 -0.153 1.573 sum 18.296 -17.937 -9.536 27.339 Atomic orbital electron populations 1.69827 1.06641 1.25743 1.60044 1.25525 0.96294 1.00991 1.04280 0.85140 0.78509 0.80193 0.76359 1.18635 1.22373 1.22611 1.19647 0.91465 0.85025 1.40082 0.90314 1.42647 1.05450 1.00937 1.88566 1.20338 0.93954 0.84590 0.94048 0.93562 1.22103 0.99495 0.96230 0.98836 1.21397 0.98124 0.93871 1.00784 1.21835 1.00831 0.98159 0.95083 1.20782 0.85241 0.96979 0.91362 0.90496 1.46072 1.27835 1.10214 1.52458 1.18313 0.84283 0.84237 0.79288 1.90782 1.63900 1.26503 1.61232 1.19936 0.97590 0.94060 1.03751 1.21780 0.95085 0.95381 0.94996 1.21250 0.95094 1.01385 0.97337 1.21661 0.99531 0.89866 0.96268 1.19187 0.96274 0.97207 1.00630 1.21977 0.99518 0.90690 0.95427 1.22307 0.96651 1.00338 1.00173 1.23655 0.92925 0.97628 0.91072 1.68250 1.32402 0.99089 1.20641 1.18917 0.92862 0.91402 0.95843 1.21966 0.99076 0.93415 1.01469 0.94263 0.79684 0.93273 0.93701 0.91386 0.92236 0.90253 0.92519 0.75810 0.83809 0.81570 0.80747 0.80141 0.80757 0.80996 0.92029 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 7 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.61 5.12 -322.96 -1.65 -37.27 16 10 C 0.18 6.60 2.60 44.99 0.12 6.71 16 11 H 0.05 1.65 6.44 -2.39 -0.02 1.64 16 12 C -0.13 -4.30 5.50 30.59 0.17 -4.13 16 13 C -0.10 -2.87 5.77 30.59 0.18 -2.70 16 14 C -0.12 -3.35 5.60 30.60 0.17 -3.18 16 15 C 0.16 4.78 2.78 44.99 0.13 4.90 16 16 H 0.08 2.44 7.58 -2.38 -0.02 2.42 16 17 N -0.71 -20.39 4.18 -445.81 -1.86 -22.25 16 18 C 0.55 17.89 7.73 86.66 0.67 18.56 16 19 O -0.55 -21.56 14.85 -4.03 -0.06 -21.62 16 20 C -0.15 -4.16 5.91 -19.86 -0.12 -4.27 16 21 C -0.05 -1.06 9.52 22.54 0.21 -0.85 16 22 C -0.13 -1.91 9.93 21.98 0.22 -1.69 16 23 C -0.05 -0.70 9.75 22.36 0.22 -0.48 16 24 C -0.13 -2.44 5.74 -21.29 -0.12 -2.56 16 25 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 26 C -0.18 -2.20 10.03 22.14 0.22 -1.98 16 27 C 0.12 2.41 11.15 85.02 0.95 3.36 16 28 N -0.50 -14.86 8.44 -187.97 -1.59 -16.44 16 29 C 0.13 3.65 6.61 40.61 0.27 3.92 16 30 C -0.12 -3.89 5.08 30.59 0.16 -3.74 16 31 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.37 19.62 7.80 -92.70 -0.72 18.90 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.61 7.60 -2.38 -0.02 1.59 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.40 10.48 4.89 -92.71 -0.45 10.02 16 40 H 0.14 2.56 6.37 -2.91 -0.02 2.54 16 41 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 44 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 2.51 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -77.74 379.63 1.93 -75.81 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.17 Total: 37.08 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.96 Total: -3.91 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -4.82 Total: -134.53 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -77.74 1.93 -75.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.307 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds