Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00132 * 3 2 1 5 5 H 1.48500 * 109.47547 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46942 * 119.99941 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 15 14 19 19 O 1.21601 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.47435 * 119.99874 * 179.97438 * 18 17 15 21 21 C 1.38744 * 120.33297 * 359.97438 * 20 18 17 22 22 C 1.38872 * 120.72443 * 180.02562 * 21 20 18 23 23 C 1.36344 * 121.05642 * 0.02562 * 22 21 20 24 24 C 1.40431 * 120.09114 * 359.97438 * 23 22 21 25 25 C 1.40810 * 121.27240 * 179.97438 * 24 23 22 26 26 C 1.36635 * 118.15240 * 179.97438 * 25 24 23 27 27 C 1.39228 * 119.91324 * 0.02562 * 26 25 24 28 28 N 1.31233 * 121.69477 * 0.02562 * 27 26 25 29 29 C 1.33352 * 121.35232 * 359.66415 * 28 27 26 30 30 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 31 31 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 34 34 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 37 37 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 38 38 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 40 40 H 1.08001 * 119.63937 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.46582 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.95266 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.92357 * 0.02562 * 25 24 23 44 44 H 1.08003 * 120.03765 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.15368 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47533 * 179.97438 * 30 10 9 47 47 H 1.08996 * 109.47853 * 300.00060 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 1.1435 -4.1847 -2.2649 14 6 0.2664 -5.2801 -1.6553 15 6 -0.0975 -4.9012 -0.2183 16 1 -0.6425 -3.9573 -0.2183 17 7 -0.9380 -5.9498 0.3653 18 6 -2.2701 -5.9368 0.1615 19 8 -2.7746 -5.0547 -0.5063 20 6 -3.1159 -6.9923 0.7484 21 6 -2.5476 -8.0024 1.5111 22 6 -3.3365 -9.0009 2.0672 23 6 -4.6868 -9.0168 1.8796 24 6 -5.3032 -8.0135 1.1144 25 6 -6.6955 -8.0060 0.9042 26 6 -7.2283 -6.9992 0.1497 27 6 -6.3973 -6.0192 -0.3866 28 7 -5.1000 -6.0312 -0.1885 29 6 -4.5187 -6.9825 0.5432 30 6 1.1808 -4.7521 0.6091 31 1 -0.4849 0.8400 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 3.0468 -3.2553 -1.8718 34 1 2.9672 -4.9794 -1.4376 35 1 1.4028 -4.4541 -3.2888 36 1 0.5985 -3.2408 -2.2649 37 1 0.8114 -6.2240 -1.6553 38 1 -0.6442 -5.3866 -2.2450 39 1 -0.5356 -6.6533 0.8982 40 1 -1.4799 -8.0128 1.6734 41 1 -2.8728 -9.7772 2.6578 42 1 -5.2832 -9.8021 2.3200 43 1 -7.3250 -8.7744 1.3284 44 1 -8.2925 -6.9636 -0.0305 45 1 -6.8313 -5.2292 -0.9814 46 1 1.7256 -5.6962 0.6087 47 1 0.9215 -4.4823 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981205861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 31.788269 kcal Electronic energy + Delta-G solvation = -28978.424464 eV Core-core repulsion = 25126.035136 eV Total energy + Delta-G solvation = -3852.389329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14201 -39.53011 -37.87536 -37.06803 -34.34039 -33.62048 -32.94774 -30.92565 -30.78527 -30.57384 -28.84815 -27.88046 -24.86258 -23.80115 -23.63778 -23.41485 -21.80991 -21.46342 -20.22882 -18.72512 -18.42920 -17.70156 -17.20513 -16.96550 -16.14010 -15.66203 -14.99079 -14.96804 -14.61839 -14.53802 -14.17784 -14.12329 -13.95648 -13.51686 -13.49817 -13.30021 -13.18342 -12.90592 -12.38356 -12.25658 -11.97824 -11.91225 -11.69928 -11.63355 -11.30444 -10.81518 -10.76179 -10.70334 -10.63792 -10.15969 -10.10347 -10.00043 -9.91020 -9.59891 -9.43601 -9.09736 -9.05935 -8.82058 -8.65139 -8.45823 -6.86078 -5.65920 -2.95281 -0.06312 0.57356 1.56442 2.55175 3.31689 3.34857 3.49673 3.53871 3.55433 4.03112 4.09197 4.29587 4.45862 4.55006 4.63274 4.66861 4.75182 4.84451 5.01517 5.16086 5.25177 5.32055 5.42135 5.56531 5.61326 5.66326 5.68434 5.77366 5.78596 5.82718 5.90195 5.94174 5.98621 6.04090 6.17619 6.19770 6.22080 6.28094 6.48088 6.53192 6.53345 6.72190 6.80976 6.90260 6.93847 7.10994 7.19630 7.76471 7.78079 7.90837 8.51723 8.58026 9.62543 10.20949 10.55169 11.56038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002718 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.173080 B =10297.406622 C =11241.738206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.179 3.821 11 H 0.050 0.950 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.120 4.120 15 C 0.148 3.852 16 H 0.099 0.901 17 N -0.726 5.726 18 C 0.546 3.454 19 O -0.488 6.488 20 C -0.099 4.099 21 C -0.068 4.068 22 C -0.125 4.125 23 C -0.076 4.076 24 C -0.112 4.112 25 C -0.062 4.062 26 C -0.174 4.174 27 C 0.131 3.869 28 N -0.433 5.433 29 C 0.160 3.840 30 C -0.127 4.127 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.390 0.610 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.161 0.839 46 H 0.060 0.940 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -23.964 3.511 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.068 0.932 12 C -0.175 4.175 13 C -0.147 4.147 14 C -0.158 4.158 15 C 0.045 3.955 16 H 0.117 0.883 17 N -0.378 5.378 18 C 0.331 3.669 19 O -0.360 6.360 20 C -0.103 4.103 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.095 4.095 24 C -0.114 4.114 25 C -0.088 4.088 26 C -0.194 4.194 27 C -0.041 4.041 28 N -0.139 5.139 29 C 0.037 3.963 30 C -0.166 4.166 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.224 0.776 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.078 0.922 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.117 -22.500 2.691 24.816 hybrid contribution -0.238 -0.139 0.637 0.694 sum -10.354 -22.638 3.328 25.115 Atomic orbital electron populations 1.69665 1.04991 1.25678 1.57373 1.24739 0.95450 0.97559 1.03152 0.86316 0.78498 0.83919 0.77706 1.21380 1.21805 1.21430 1.19169 0.90876 0.84191 1.42864 0.91329 1.42510 1.05824 0.99577 1.88492 1.20150 0.93928 0.86007 0.93041 0.93186 1.22177 0.96895 0.99379 0.99079 1.21353 0.96693 0.99364 0.97330 1.21841 0.99585 0.98559 0.95850 1.21037 0.90984 0.91311 0.92197 0.88259 1.46108 1.06653 1.30281 1.54763 1.17914 0.82012 0.85375 0.81608 1.90907 1.72786 1.35351 1.37004 1.20079 0.92165 0.97190 1.00873 1.21459 1.00402 0.92733 0.94243 1.20825 0.93860 0.99038 1.00589 1.21130 0.95189 0.96925 0.96240 1.18843 0.94604 0.97104 1.00823 1.21442 0.93272 0.97990 0.96083 1.21986 1.01767 0.96154 0.99494 1.23242 0.89048 0.96650 0.95173 1.68378 1.11520 1.21999 1.12041 1.18669 0.92725 0.90791 0.94115 1.22075 0.95504 0.99451 0.99595 0.93483 0.77961 0.92062 0.93948 0.93378 0.90323 0.92920 0.92284 0.77576 0.84749 0.84848 0.84970 0.84342 0.84445 0.82177 0.92154 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -18.11 4.28 -53.43 -0.23 -18.34 16 10 C 0.18 3.53 3.10 -67.93 -0.21 3.32 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.13 -2.43 5.61 -26.73 -0.15 -2.58 16 13 C -0.11 -1.98 5.77 -26.73 -0.15 -2.14 16 14 C -0.12 -1.99 5.49 -26.73 -0.15 -2.13 16 15 C 0.15 2.56 2.28 -67.93 -0.15 2.40 16 16 H 0.10 2.19 5.94 -51.93 -0.31 1.89 16 17 N -0.73 -10.57 5.03 -54.87 -0.28 -10.84 16 18 C 0.55 9.32 7.73 -12.52 -0.10 9.22 16 19 O -0.49 -10.61 14.85 5.28 0.08 -10.53 16 20 C -0.10 -1.39 5.91 -104.61 -0.62 -2.00 16 21 C -0.07 -0.65 9.52 -39.16 -0.37 -1.03 16 22 C -0.13 -0.95 9.93 -40.03 -0.40 -1.35 16 23 C -0.08 -0.60 9.75 -39.44 -0.38 -0.98 16 24 C -0.11 -1.20 5.74 -106.82 -0.61 -1.81 16 25 C -0.06 -0.52 9.90 -39.19 -0.39 -0.90 16 26 C -0.17 -1.49 10.03 -39.79 -0.40 -1.89 16 27 C 0.13 1.55 11.15 -17.44 -0.19 1.35 16 28 N -0.43 -6.95 8.44 -10.76 -0.09 -7.04 16 29 C 0.16 2.32 6.61 -84.58 -0.56 1.76 16 30 C -0.13 -2.07 5.08 -26.73 -0.14 -2.20 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.39 10.51 6.06 -40.82 -0.25 10.26 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.73 7.60 -51.93 -0.39 1.33 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 4.20 6.63 -40.82 -0.27 3.93 16 40 H 0.13 0.93 6.37 -52.49 -0.33 0.59 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -36.48 379.63 -10.91 -47.39 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.59 Total: 12.27 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -5.22 Total: -8.27 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.13 Total: -64.43 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.48 -10.91 -47.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.174 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds