Wall clock time and date at job start Sat Apr 11 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00132 * 3 2 1 5 5 H 1.48500 * 109.47547 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46942 * 119.99941 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 15 14 19 19 O 1.21601 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.47435 * 119.99874 * 179.97438 * 18 17 15 21 21 C 1.38744 * 120.33297 * 359.97438 * 20 18 17 22 22 C 1.38872 * 120.72443 * 180.02562 * 21 20 18 23 23 C 1.36344 * 121.05642 * 0.02562 * 22 21 20 24 24 C 1.40431 * 120.09114 * 359.97438 * 23 22 21 25 25 C 1.40810 * 121.27240 * 179.97438 * 24 23 22 26 26 C 1.36635 * 118.15240 * 179.97438 * 25 24 23 27 27 C 1.39228 * 119.91324 * 0.02562 * 26 25 24 28 28 N 1.31233 * 121.69477 * 0.02562 * 27 26 25 29 29 C 1.33352 * 121.35232 * 359.66415 * 28 27 26 30 30 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 31 31 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 34 34 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 37 37 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 38 38 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 40 40 H 1.08001 * 119.63937 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.46582 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.95266 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.92357 * 0.02562 * 25 24 23 44 44 H 1.08003 * 120.03765 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.15368 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47533 * 179.97438 * 30 10 9 47 47 H 1.08996 * 109.47853 * 300.00060 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 1.1435 -4.1847 -2.2649 14 6 0.2664 -5.2801 -1.6553 15 6 -0.0975 -4.9012 -0.2183 16 1 -0.6425 -3.9573 -0.2183 17 7 -0.9380 -5.9498 0.3653 18 6 -2.2701 -5.9368 0.1615 19 8 -2.7746 -5.0547 -0.5063 20 6 -3.1159 -6.9923 0.7484 21 6 -2.5476 -8.0024 1.5111 22 6 -3.3365 -9.0009 2.0672 23 6 -4.6868 -9.0168 1.8796 24 6 -5.3032 -8.0135 1.1144 25 6 -6.6955 -8.0060 0.9042 26 6 -7.2283 -6.9992 0.1497 27 6 -6.3973 -6.0192 -0.3866 28 7 -5.1000 -6.0312 -0.1885 29 6 -4.5187 -6.9825 0.5432 30 6 1.1808 -4.7521 0.6091 31 1 -0.4849 0.8400 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 3.0468 -3.2553 -1.8718 34 1 2.9672 -4.9794 -1.4376 35 1 1.4028 -4.4541 -3.2888 36 1 0.5985 -3.2408 -2.2649 37 1 0.8114 -6.2240 -1.6553 38 1 -0.6442 -5.3866 -2.2450 39 1 -0.5356 -6.6533 0.8982 40 1 -1.4799 -8.0128 1.6734 41 1 -2.8728 -9.7772 2.6578 42 1 -5.2832 -9.8021 2.3200 43 1 -7.3250 -8.7744 1.3284 44 1 -8.2925 -6.9636 -0.0305 45 1 -6.8313 -5.2292 -0.9814 46 1 1.7256 -5.6962 0.6087 47 1 0.9215 -4.4823 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981205861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:50 Heat of formation + Delta-G solvation = 6.441992 kcal Electronic energy + Delta-G solvation = -28979.523561 eV Core-core repulsion = 25126.035136 eV Total energy + Delta-G solvation = -3853.488426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.97959 -40.79894 -39.26798 -37.88905 -35.97709 -34.75029 -34.35567 -32.72250 -31.67586 -31.42132 -30.27829 -29.47198 -25.77723 -25.58494 -24.62179 -24.36813 -23.30738 -22.74454 -21.43123 -20.11868 -19.30680 -19.12208 -18.72526 -17.84679 -17.07330 -16.99027 -16.53079 -16.15366 -15.84796 -15.66451 -15.39622 -15.32576 -15.21367 -15.03721 -14.85006 -14.67091 -14.07501 -13.86083 -13.71758 -13.43627 -13.38836 -13.04101 -12.87782 -12.78854 -12.70793 -12.61501 -12.30057 -12.19314 -12.14202 -11.81676 -11.57233 -11.47822 -11.44835 -11.19743 -10.90432 -10.81027 -10.09737 -9.99926 -9.79537 -9.26252 -8.95672 -7.89696 -5.18162 -0.81193 -0.15828 0.77734 1.44609 1.48625 1.54593 1.81383 2.14207 2.26997 2.57875 3.18072 3.36087 3.42806 3.55996 3.75768 3.78326 3.86812 3.92975 3.98951 4.05121 4.08107 4.16899 4.22737 4.36364 4.44073 4.45516 4.51297 4.58667 4.68756 4.71847 4.76689 4.80689 4.92956 4.98808 5.02750 5.09278 5.10681 5.22223 5.22593 5.31296 5.37431 5.43855 5.47723 5.53505 5.58132 5.66116 5.67161 5.86052 6.31188 6.65003 7.10069 7.36242 7.39558 8.16579 8.37020 9.33680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002718 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.173080 B =10297.406622 C =11241.738206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.085 4.085 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.736 5.736 10 C 0.167 3.833 11 H 0.057 0.943 12 C -0.125 4.125 13 C -0.106 4.106 14 C -0.108 4.108 15 C 0.156 3.844 16 H 0.037 0.963 17 N -0.709 5.709 18 C 0.540 3.460 19 O -0.555 6.555 20 C -0.152 4.152 21 C -0.043 4.043 22 C -0.128 4.128 23 C -0.056 4.056 24 C -0.131 4.131 25 C -0.049 4.049 26 C -0.177 4.177 27 C 0.113 3.887 28 N -0.505 5.505 29 C 0.126 3.874 30 C -0.113 4.113 31 H 0.246 0.754 32 H 0.369 0.631 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.412 0.588 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.174 0.826 45 H 0.164 0.836 46 H 0.112 0.888 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -28.993 5.571 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.377 5.377 10 C 0.058 3.942 11 H 0.075 0.925 12 C -0.165 4.165 13 C -0.144 4.144 14 C -0.146 4.146 15 C 0.051 3.949 16 H 0.055 0.945 17 N -0.362 5.362 18 C 0.328 3.672 19 O -0.432 6.432 20 C -0.156 4.156 21 C -0.064 4.064 22 C -0.145 4.145 23 C -0.074 4.074 24 C -0.133 4.133 25 C -0.074 4.074 26 C -0.196 4.196 27 C -0.058 4.058 28 N -0.213 5.213 29 C 0.004 3.996 30 C -0.152 4.152 31 H 0.055 0.945 32 H 0.201 0.799 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.196 0.804 42 H 0.195 0.805 43 H 0.203 0.797 44 H 0.192 0.808 45 H 0.181 0.819 46 H 0.131 0.869 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.984 -27.608 4.777 29.423 hybrid contribution -0.604 1.259 0.028 1.397 sum -9.588 -26.349 4.805 28.448 Atomic orbital electron populations 1.69880 1.06860 1.25701 1.60181 1.25598 0.96209 1.01266 1.04530 0.85222 0.77046 0.79342 0.78238 1.20433 1.22847 1.20099 1.19645 0.91482 0.85301 1.39946 0.90206 1.42780 1.05345 1.01113 1.88425 1.20515 0.94227 0.84806 0.94610 0.92474 1.22053 0.96408 1.00943 0.97060 1.21284 0.96709 0.97440 0.98967 1.21730 0.98659 0.99577 0.94673 1.20701 0.91094 0.89694 0.93422 0.94473 1.45826 1.05914 1.29985 1.54490 1.18603 0.82632 0.85380 0.80577 1.90862 1.73994 1.38203 1.40189 1.19952 0.92072 0.98680 1.04928 1.21866 1.02034 0.91093 0.91359 1.21329 0.93809 0.99090 1.00309 1.21704 0.95881 0.96136 0.93710 1.19212 0.95695 0.97009 1.01375 1.22011 0.92703 0.98226 0.94493 1.22275 1.03021 0.95256 0.99075 1.23581 0.88715 0.97985 0.95551 1.68271 1.13651 1.24549 1.14795 1.19068 0.93515 0.91971 0.95084 1.21958 0.94509 1.00466 0.98251 0.94501 0.79855 0.94039 0.89310 0.91431 0.95678 0.88824 0.94705 0.74950 0.82070 0.80425 0.80501 0.79692 0.80849 0.81922 0.86929 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.59 13.06 21.65 0.28 -64.31 16 2 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 3 Si 0.97 48.64 29.55 68.60 2.03 50.67 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.23 -13.30 9.93 84.03 0.83 -12.47 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -38.61 4.28 -322.94 -1.38 -39.99 16 10 C 0.17 6.47 3.10 44.99 0.14 6.61 16 11 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 12 C -0.12 -4.31 5.61 30.59 0.17 -4.14 16 13 C -0.11 -3.92 5.77 30.59 0.18 -3.74 16 14 C -0.11 -3.61 5.49 30.59 0.17 -3.44 16 15 C 0.16 5.57 2.28 44.99 0.10 5.68 16 16 H 0.04 1.83 5.94 -2.39 -0.01 1.81 16 17 N -0.71 -21.01 5.03 -445.78 -2.24 -23.25 16 18 C 0.54 19.96 7.73 86.67 0.67 20.63 16 19 O -0.55 -27.27 14.85 -4.04 -0.06 -27.33 16 20 C -0.15 -4.41 5.91 -19.86 -0.12 -4.52 16 21 C -0.04 -0.73 9.52 22.54 0.21 -0.51 16 22 C -0.13 -1.33 9.93 21.98 0.22 -1.11 16 23 C -0.06 -0.63 9.75 22.36 0.22 -0.41 16 24 C -0.13 -2.57 5.74 -21.29 -0.12 -2.69 16 25 C -0.05 -0.68 9.90 22.52 0.22 -0.45 16 26 C -0.18 -2.86 10.03 22.13 0.22 -2.64 16 27 C 0.11 2.93 11.15 85.02 0.95 3.88 16 28 N -0.50 -18.04 8.44 -187.96 -1.59 -19.62 16 29 C 0.13 3.85 6.61 40.61 0.27 4.11 16 30 C -0.11 -3.53 5.08 30.60 0.16 -3.37 16 31 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.37 21.79 6.06 -92.71 -0.56 21.23 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.02 1.18 7.60 -2.39 -0.02 1.16 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.41 8.06 6.63 -92.71 -0.61 7.45 16 40 H 0.16 1.61 6.37 -2.91 -0.02 1.59 16 41 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 42 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 44 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 46 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -93.32 379.63 1.83 -91.50 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.17 Total: 35.59 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.96 Total: -3.26 kcal Atomic # 7 Polarization: -142.25 SS G_CDS: -4.93 Total: -147.17 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -93.32 1.83 -91.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.939 kcal (2) G-P(sol) polarization free energy of solvation -93.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds