Wall clock time and date at job start Sat Apr 11 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00194 * 2 1 4 4 H 1.48500 * 109.46759 * 269.99734 * 3 2 1 5 5 H 1.48497 * 109.47129 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47137 * 150.00115 * 3 2 1 7 7 C 1.38820 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99774 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00089 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47016 * 325.00684 * 10 9 7 12 12 C 1.53000 * 109.46747 * 85.00323 * 10 9 7 13 13 C 1.53001 * 109.47184 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46957 * 299.99982 * 13 12 10 15 15 C 1.53000 * 109.47157 * 59.99606 * 14 13 12 16 16 H 1.08994 * 109.46826 * 60.00459 * 15 14 13 17 17 N 1.46500 * 109.47180 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99958 * 275.00355 * 17 15 14 19 19 O 1.21545 * 120.00575 * 359.97438 * 18 17 15 20 20 C 1.47905 * 119.99983 * 179.97438 * 18 17 15 21 21 C 1.38890 * 121.11629 * 354.15098 * 20 18 17 22 22 C 1.39262 * 119.58482 * 180.02562 * 21 20 18 23 23 N 1.30994 * 121.88587 * 359.97261 * 22 21 20 24 24 C 1.33534 * 121.82493 * 0.03303 * 23 22 21 25 25 C 1.40717 * 120.97540 * 179.97438 * 24 23 22 26 26 C 1.36053 * 119.74520 * 180.02562 * 25 24 23 27 27 C 1.39354 * 121.05705 * 0.02562 * 26 25 24 28 28 C 1.36248 * 120.83492 * 359.97438 * 27 26 25 29 29 C 1.40107 * 119.64617 * 359.71757 * 28 27 26 30 30 C 1.52997 * 109.47156 * 300.00063 * 15 14 13 31 31 H 0.97001 * 120.00167 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00080 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47182 * 299.99807 * 12 10 9 34 34 H 1.08998 * 109.47647 * 59.99907 * 12 10 9 35 35 H 1.08994 * 109.47360 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47159 * 59.99296 * 13 12 10 37 37 H 1.09007 * 109.47156 * 300.00206 * 14 13 12 38 38 H 1.08997 * 109.47713 * 180.02562 * 14 13 12 39 39 H 0.97003 * 120.00180 * 94.99705 * 17 15 14 40 40 H 1.08007 * 120.20566 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.06093 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.12333 * 359.97438 * 25 24 23 43 43 H 1.08006 * 119.47466 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.58178 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.17917 * 180.02562 * 28 27 26 46 46 H 1.09004 * 109.47007 * 179.97438 * 30 15 14 47 47 H 1.08994 * 109.47576 * 299.99936 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 1 2.9682 -3.5509 -0.5885 12 6 2.4228 -4.0350 1.4385 13 6 3.1883 -5.3598 1.4386 14 6 2.3111 -6.4557 0.8299 15 6 1.9461 -6.0775 -0.6070 16 1 2.8564 -5.9712 -1.1970 17 7 1.1057 -7.1265 -1.1897 18 6 1.6748 -8.2089 -1.7561 19 8 2.8854 -8.3146 -1.7840 20 6 0.8264 -9.2683 -2.3438 21 6 -0.5565 -9.2317 -2.2196 22 6 -1.3247 -10.2464 -2.7851 23 7 -0.7813 -11.2439 -3.4374 24 6 0.5408 -11.3445 -3.5964 25 6 1.1055 -12.4243 -4.3001 26 6 2.4559 -12.5022 -4.4466 27 6 3.2947 -11.5276 -3.9094 28 6 2.7837 -10.4681 -3.2220 29 6 1.3971 -10.3525 -3.0574 30 6 1.1807 -4.7528 -0.6070 31 1 -0.4850 0.8400 -0.0004 32 1 0.3554 -2.3881 0.0016 33 1 3.0481 -3.2545 1.8720 34 1 1.5125 -4.1410 2.0287 35 1 3.4486 -5.6290 2.4622 36 1 4.0985 -5.2535 0.8485 37 1 1.4007 -6.5620 1.4199 38 1 2.8561 -7.3996 0.8303 39 1 0.1396 -7.0421 -1.1677 40 1 -1.0330 -8.4219 -1.6870 41 1 -2.3992 -10.2093 -2.6838 42 1 0.4695 -13.1887 -4.7215 43 1 2.8848 -13.3331 -4.9872 44 1 4.3634 -11.6133 -4.0396 45 1 3.4436 -9.7186 -2.8104 46 1 0.9211 -4.4831 -1.6308 47 1 0.2704 -4.8591 -0.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981209550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:05 Heat of formation + Delta-G solvation = 3.851166 kcal Electronic energy + Delta-G solvation = -28369.377131 eV Core-core repulsion = 24515.776359 eV Total energy + Delta-G solvation = -3853.600772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.19238 -40.81444 -39.26178 -38.09478 -36.31031 -35.04367 -34.39130 -32.93399 -31.59233 -31.36452 -30.36785 -29.36615 -26.22170 -25.67480 -24.58943 -24.07266 -23.18694 -22.55762 -21.68078 -20.87551 -19.39761 -19.01463 -18.56806 -18.38127 -17.34183 -16.74922 -16.43804 -16.29019 -16.02174 -15.72166 -15.51040 -15.31749 -15.29808 -14.99731 -14.93051 -14.81908 -14.38052 -14.14217 -14.08254 -13.58448 -13.40694 -12.90177 -12.83859 -12.79878 -12.63253 -12.35590 -12.26438 -12.15762 -12.04855 -11.97384 -11.67797 -11.59102 -11.54667 -11.39405 -11.20128 -10.87473 -10.35113 -10.18113 -9.81834 -9.30144 -8.99420 -7.93856 -5.21244 -0.96634 -0.23270 0.65799 1.47627 1.48256 1.56539 1.71545 1.87948 2.08085 2.56581 3.08321 3.27358 3.38615 3.40878 3.59847 3.63919 3.68980 3.85153 3.85686 4.02760 4.16797 4.20363 4.25539 4.30621 4.37641 4.43440 4.51445 4.54317 4.57267 4.59926 4.66427 4.75519 4.76853 4.96863 5.05068 5.07302 5.15758 5.17155 5.22246 5.34114 5.35029 5.38762 5.48614 5.50870 5.53126 5.57246 5.65941 5.87728 6.29023 6.38669 6.79890 7.04686 7.35611 8.11492 8.34972 9.29412 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.002145 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.208934 B =13052.981716 C =13465.869735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.073 0.927 17 N -0.699 5.699 18 C 0.560 3.440 19 O -0.557 6.557 20 C -0.093 4.093 21 C -0.121 4.121 22 C 0.124 3.876 23 N -0.476 5.476 24 C 0.100 3.900 25 C -0.107 4.107 26 C -0.094 4.094 27 C -0.114 4.114 28 C -0.129 4.129 29 C -0.086 4.086 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.415 0.585 40 H 0.177 0.823 41 H 0.204 0.796 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.062 0.938 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 -27.078 -5.113 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C 0.348 3.652 19 O -0.437 6.437 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.048 4.048 23 N -0.185 5.185 24 C -0.021 4.021 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.132 4.132 28 C -0.147 4.147 29 C -0.089 4.089 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.253 0.747 40 H 0.194 0.806 41 H 0.221 0.779 42 H 0.169 0.831 43 H 0.181 0.819 44 H 0.167 0.833 45 H 0.168 0.832 46 H 0.081 0.919 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.501 -27.705 -5.533 28.257 hybrid contribution 0.114 2.102 0.426 2.148 sum 0.615 -25.603 -5.107 26.115 Atomic orbital electron populations 1.69790 1.06387 1.25915 1.59749 1.25481 0.96369 1.00803 1.04085 0.85229 0.77768 0.79997 0.77338 1.21612 1.22239 1.19655 1.19567 0.91286 0.85306 1.40607 0.91027 1.42565 1.05474 1.00768 1.88692 1.20303 0.93850 0.84735 0.94287 0.94604 1.22103 0.99694 0.96379 0.98538 1.21408 0.98080 0.93693 1.01302 1.21817 1.00633 0.98360 0.94666 1.20833 0.93735 0.85466 0.94512 0.90877 1.45878 1.11354 1.19832 1.57965 1.18268 0.87307 0.81984 0.77636 1.90592 1.15477 1.78341 1.59285 1.20380 0.94960 0.95279 0.99801 1.22853 0.92002 1.00834 0.98492 1.23591 1.02521 0.87863 0.90798 1.67858 1.11706 1.24396 1.14526 1.19200 0.89018 0.95372 0.98503 1.21098 0.95991 0.96911 0.98575 1.21352 0.92782 0.99265 0.97922 1.21437 1.01819 0.93628 0.96301 1.22039 0.94359 0.99974 0.98358 1.18884 0.95651 0.95141 0.99184 1.21886 0.99248 0.92775 1.01521 0.94092 0.79373 0.94093 0.92660 0.90604 0.92327 0.90523 0.91936 0.74743 0.80577 0.77940 0.83073 0.81870 0.83275 0.83171 0.91940 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 2 C -0.08 -4.25 5.50 84.87 0.47 -3.79 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -12.85 9.93 84.04 0.83 -12.01 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -35.61 5.12 -322.93 -1.65 -37.26 16 10 C 0.18 6.59 2.77 44.99 0.12 6.71 16 11 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.21 5.50 30.59 0.17 -4.04 16 13 C -0.11 -2.74 5.92 30.60 0.18 -2.56 16 14 C -0.12 -2.72 5.49 30.59 0.17 -2.55 16 15 C 0.16 3.97 2.45 44.99 0.11 4.08 16 16 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 17 N -0.70 -14.30 5.03 -445.36 -2.24 -16.54 16 18 C 0.56 13.67 7.72 86.80 0.67 14.34 16 19 O -0.56 -17.04 13.19 -3.86 -0.05 -17.09 16 20 C -0.09 -2.00 5.94 -19.68 -0.12 -2.12 16 21 C -0.12 -1.75 9.59 22.67 0.22 -1.53 16 22 C 0.12 1.78 11.14 85.06 0.95 2.73 16 23 N -0.48 -9.64 10.30 -188.73 -1.94 -11.59 16 24 C 0.10 2.21 6.61 40.35 0.27 2.48 16 25 C -0.11 -1.88 9.98 22.37 0.22 -1.66 16 26 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 27 C -0.11 -2.00 9.96 22.07 0.22 -1.78 16 28 C -0.13 -3.05 9.25 22.26 0.21 -2.85 16 29 C -0.09 -2.06 5.76 -21.09 -0.12 -2.18 16 30 C -0.12 -3.32 4.86 30.59 0.15 -3.18 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.37 19.24 7.80 -92.71 -0.72 18.52 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 39 H 0.41 5.92 6.77 -92.71 -0.63 5.29 16 40 H 0.18 1.21 6.55 -2.91 -0.02 1.19 16 41 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.15 4.08 4.98 -2.91 -0.01 4.07 16 46 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -72.18 381.17 1.01 -71.17 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.34 Total: 32.26 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.93 Total: -11.03 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.56 Total: -123.18 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.05 Total: -17.09 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -72.18 1.01 -71.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981209550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.019 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds