Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00418 * 2 1 4 4 H 1.48497 * 109.47188 * 270.00035 * 3 2 1 5 5 H 1.48510 * 109.47118 * 29.99771 * 3 2 1 6 6 H 1.48500 * 109.47233 * 149.99580 * 3 2 1 7 7 C 1.38813 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00188 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46943 * 34.99931 * 10 9 7 12 12 C 1.52996 * 109.47047 * 274.99812 * 10 9 7 13 13 C 1.53001 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47272 * 59.99928 * 13 12 10 15 15 C 1.52999 * 109.47240 * 300.00479 * 14 13 12 16 16 H 1.09002 * 109.46983 * 299.99658 * 15 14 13 17 17 N 1.46500 * 109.47304 * 179.97438 * 15 14 13 18 18 C 1.34773 * 120.00030 * 84.99530 * 17 15 14 19 19 O 1.21566 * 120.00065 * 0.02562 * 18 17 15 20 20 C 1.47772 * 119.99969 * 179.97438 * 18 17 15 21 21 C 1.40632 * 119.80292 * 359.97438 * 20 18 17 22 22 C 1.35699 * 120.92279 * 179.97438 * 21 20 18 23 23 C 1.40766 * 120.11277 * 0.02562 * 22 21 20 24 24 N 1.33639 * 120.83586 * 179.97438 * 23 22 21 25 25 C 1.31123 * 121.39731 * 180.02562 * 24 23 22 26 26 C 1.39315 * 121.76568 * 359.97354 * 25 24 23 27 27 C 1.36585 * 119.90674 * 0.02834 * 26 25 24 28 28 C 1.40887 * 118.15486 * 359.74737 * 27 26 25 29 29 C 1.38549 * 119.80607 * 180.02562 * 20 18 17 30 30 C 1.53001 * 109.47379 * 59.99586 * 15 14 13 31 31 H 0.97004 * 119.99626 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99733 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47347 * 299.99872 * 12 10 9 34 34 H 1.09002 * 109.47275 * 60.00056 * 12 10 9 35 35 H 1.09001 * 109.47324 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47005 * 300.00238 * 13 12 10 37 37 H 1.08998 * 109.47683 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.46853 * 60.00217 * 14 13 12 39 39 H 0.97003 * 119.99782 * 264.99570 * 17 15 14 40 40 H 1.07996 * 119.54083 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.94631 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.12102 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.04469 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.91919 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.29576 * 0.02562 * 29 20 18 46 46 H 1.09002 * 109.47005 * 60.00085 * 30 15 14 47 47 H 1.09001 * 109.47324 * 180.02562 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5506 0.5900 12 6 2.4216 -4.0357 -1.4364 13 6 3.1871 -5.3604 -1.4364 14 6 2.3104 -6.4560 -0.8265 15 6 1.9465 -6.0772 0.6104 16 1 2.8573 -5.9706 1.1998 17 7 1.1066 -7.1260 1.1942 18 6 1.6761 -8.2081 1.7607 19 8 2.8869 -8.3137 1.7877 20 6 0.8289 -9.2657 2.3501 21 6 -0.5713 -9.1385 2.3180 22 6 -1.3709 -10.0961 2.8519 23 6 -0.8036 -11.2373 3.4496 24 7 -1.5774 -12.1890 3.9802 25 6 -1.0607 -13.2562 4.5400 26 6 0.3166 -13.4536 4.6103 27 6 1.1659 -12.5203 4.0877 28 6 0.6068 -11.3774 3.4828 29 6 1.4187 -10.3762 2.9319 30 6 1.1811 -4.7524 0.6104 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 0.0005 33 1 1.5109 -4.1419 -2.0259 34 1 3.0466 -3.2554 -1.8708 35 1 3.4459 -5.6306 -2.4602 36 1 4.0979 -5.2538 -0.8471 37 1 2.8558 -7.3997 -0.8261 38 1 1.3997 -6.5627 -1.4159 39 1 0.1405 -7.0415 1.1730 40 1 -1.0165 -8.2669 1.8614 41 1 -2.4443 -9.9825 2.8182 42 1 -1.7205 -14.0022 4.9578 43 1 0.7122 -14.3434 5.0775 44 1 2.2363 -12.6570 4.1329 45 1 2.4942 -10.4717 2.9568 46 1 0.2703 -4.8591 0.0211 47 1 0.9222 -4.4823 1.6342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981308818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = 16.423634 kcal Electronic energy + Delta-G solvation = -27899.432848 eV Core-core repulsion = 24046.377259 eV Total energy + Delta-G solvation = -3853.055589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.29955 -40.03212 -38.15282 -36.94094 -34.78878 -33.93482 -33.39358 -31.32066 -31.09217 -30.46913 -29.21798 -27.78696 -25.22731 -24.26440 -23.73517 -22.66350 -22.03677 -21.62151 -20.56156 -19.64621 -18.56566 -18.14246 -17.33014 -17.03243 -16.22654 -16.07577 -15.21069 -14.97032 -14.85626 -14.60779 -14.44534 -14.35588 -13.99988 -13.83935 -13.78677 -13.53991 -13.49732 -13.16018 -12.74663 -12.45339 -12.20646 -12.12990 -11.94435 -11.85460 -11.03324 -11.00682 -10.95447 -10.87953 -10.73839 -10.36989 -10.33914 -10.19750 -10.12884 -9.94933 -9.74225 -9.61477 -9.27489 -9.02995 -8.87551 -8.67897 -6.97022 -5.77630 -3.06202 -0.17450 0.25100 1.50377 2.09211 3.01455 3.09042 3.43297 3.48821 3.50129 3.72430 3.81499 4.14753 4.24717 4.37819 4.46533 4.57093 4.59659 4.69000 4.76585 4.97497 5.03040 5.07411 5.29962 5.32964 5.46062 5.49033 5.51663 5.59094 5.59517 5.67249 5.71909 5.83289 5.85416 5.89050 5.95805 6.01267 6.05496 6.12865 6.27863 6.30997 6.32047 6.50356 6.52132 6.60379 6.71680 6.95597 7.11418 7.42274 7.44697 7.70365 8.09527 8.41128 9.52344 10.09488 10.44216 11.45066 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.001942 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.269708 B =14416.129531 C =15053.343314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.089 0.911 17 N -0.716 5.716 18 C 0.557 3.443 19 O -0.537 6.537 20 C -0.131 4.131 21 C -0.074 4.074 22 C -0.097 4.097 23 C 0.142 3.858 24 N -0.478 5.478 25 C 0.139 3.861 26 C -0.181 4.181 27 C -0.045 4.045 28 C -0.114 4.114 29 C -0.026 4.026 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.399 0.601 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.065 0.935 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 -28.461 6.571 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.344 3.656 19 O -0.415 6.415 20 C -0.134 4.134 21 C -0.095 4.095 22 C -0.115 4.115 23 C 0.021 3.979 24 N -0.186 5.186 25 C -0.033 4.033 26 C -0.201 4.201 27 C -0.071 4.071 28 C -0.116 4.116 29 C -0.046 4.046 30 C -0.169 4.169 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.234 0.766 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.083 0.917 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.001 -28.124 6.517 28.887 hybrid contribution 0.479 0.826 -0.029 0.955 sum -0.522 -27.298 6.488 28.064 Atomic orbital electron populations 1.69661 1.05092 1.25621 1.57834 1.24739 0.95525 0.97684 1.03087 0.86201 0.78681 0.83884 0.77504 1.21752 1.21816 1.20754 1.19244 0.91027 0.84058 1.42490 0.91137 1.42395 1.05739 0.99692 1.88612 1.20095 0.94110 0.85517 0.92983 0.93335 1.22294 0.99729 0.95243 1.00466 1.21487 0.98521 0.95346 0.99964 1.21885 1.00179 0.98883 0.95312 1.21084 0.94476 0.85936 0.94058 0.89253 1.46100 1.10639 1.20998 1.58904 1.18157 0.87639 0.81813 0.78009 1.90781 1.13986 1.78228 1.58510 1.20027 0.93711 0.96575 1.03061 1.20998 0.92152 0.98899 0.97409 1.20701 1.00907 0.91984 0.97940 1.19025 0.89026 0.94063 0.95813 1.68083 1.39236 1.01794 1.09485 1.23063 0.93445 0.94047 0.92754 1.21923 0.94841 1.01010 1.02349 1.21592 1.00878 0.91706 0.92959 1.18819 0.94261 0.96631 1.01916 1.21460 1.00485 0.90574 0.92098 1.22104 0.99378 0.93302 1.02098 0.93553 0.78335 0.92644 0.91871 0.92478 0.92146 0.92147 0.92003 0.76580 0.84657 0.83999 0.82178 0.84220 0.83950 0.83626 0.91650 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.64 5.12 -53.43 -0.27 -17.92 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.12 -1.65 5.49 -26.73 -0.15 -1.79 16 15 C 0.15 2.04 2.45 -67.93 -0.17 1.87 16 16 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -8.34 5.03 -54.77 -0.28 -8.62 16 18 C 0.56 7.15 7.73 -12.36 -0.10 7.05 16 19 O -0.54 -8.64 15.97 5.31 0.08 -8.55 16 20 C -0.13 -1.39 5.87 -104.98 -0.62 -2.00 16 21 C -0.07 -0.65 9.44 -39.59 -0.37 -1.02 16 22 C -0.10 -0.88 9.95 -39.54 -0.39 -1.27 16 23 C 0.14 1.44 6.61 -84.78 -0.56 0.88 16 24 N -0.48 -4.70 10.33 -10.92 -0.11 -4.81 16 25 C 0.14 0.95 11.15 -17.45 -0.19 0.76 16 26 C -0.18 -1.02 10.03 -39.78 -0.40 -1.42 16 27 C -0.05 -0.31 9.89 -39.18 -0.39 -0.70 16 28 C -0.11 -1.07 5.74 -106.82 -0.61 -1.68 16 29 C -0.03 -0.26 9.35 -38.74 -0.36 -0.63 16 30 C -0.13 -2.01 4.86 -26.73 -0.13 -2.14 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 3.65 6.59 -40.82 -0.27 3.38 16 40 H 0.14 0.86 6.35 -52.49 -0.33 0.53 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.15 1.37 7.62 -52.49 -0.40 0.97 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.56 386.07 -10.99 -44.55 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.75 Total: 9.60 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -5.18 Total: -10.20 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.06 Total: -58.50 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.56 -10.99 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981308818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.973 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds