Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47375 * 269.99860 * 3 2 1 5 5 H 1.48506 * 109.46968 * 30.00026 * 3 2 1 6 6 H 1.48510 * 109.47076 * 149.99520 * 3 2 1 7 7 C 1.38819 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 194.64194 * 7 2 1 9 9 N 1.36937 * 119.99992 * 14.64332 * 7 2 1 10 10 C 1.43460 * 118.94024 * 204.97005 * 9 7 2 11 11 C 1.53798 * 107.96402 * 273.62608 * 10 9 7 12 12 C 1.47138 * 111.83868 * 281.67797 * 11 10 9 13 13 N 1.48207 * 110.34772 * 58.29084 * 12 11 10 14 14 C 1.34778 * 119.96991 * 102.46674 * 13 12 11 15 15 O 1.21285 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00013 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.46973 * 179.97438 * 16 14 13 18 18 C 1.39352 * 119.47102 * 269.97691 * 17 16 14 19 19 C 1.36135 * 120.87220 * 180.02562 * 18 17 16 20 20 C 1.40427 * 119.61158 * 0.02562 * 19 18 17 21 21 C 1.40769 * 121.37697 * 179.97438 * 20 19 18 22 22 C 1.36576 * 118.15448 * 180.02562 * 21 20 19 23 23 C 1.39332 * 119.92983 * 0.02562 * 22 21 20 24 24 N 1.31080 * 121.75410 * 359.97438 * 23 22 21 25 25 C 1.33686 * 121.31998 * 0.02562 * 24 23 22 26 26 C 1.36077 * 119.46433 * 90.00610 * 17 16 14 27 27 C 1.43617 * 120.05801 * 282.73891 * 13 12 11 28 28 C 1.48863 * 118.94040 * 24.94491 * 9 7 2 29 29 H 0.97005 * 120.00243 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.76511 * 154.00846 * 10 9 7 31 31 H 1.09000 * 109.80606 * 33.26841 * 10 9 7 32 32 H 1.09000 * 109.00772 * 161.06374 * 11 10 9 33 33 H 1.09009 * 108.94140 * 42.23750 * 11 10 9 34 34 H 1.09002 * 109.32008 * 298.01829 * 12 11 10 35 35 H 1.09004 * 109.18178 * 178.47350 * 12 11 10 36 36 H 1.09000 * 109.46836 * 59.99891 * 16 14 13 37 37 H 1.09000 * 109.47117 * 300.00358 * 16 14 13 38 38 H 1.08002 * 119.56435 * 0.02843 * 18 17 16 39 39 H 1.07998 * 120.19731 * 180.02562 * 19 18 17 40 40 H 1.08004 * 120.92294 * 0.04688 * 21 20 19 41 41 H 1.07999 * 120.03468 * 179.97438 * 22 21 20 42 42 H 1.08009 * 119.12204 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.12141 * 0.24852 * 26 17 16 44 44 H 1.08999 * 108.87846 * 211.19443 * 27 13 12 45 45 H 1.09004 * 108.87431 * 329.63515 * 27 13 12 46 46 H 1.09004 * 109.47696 * 260.60602 * 28 9 7 47 47 H 1.08997 * 109.48083 * 20.62272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0639 -1.2172 0.2370 9 7 1.3589 -2.3690 -0.2987 10 6 1.8823 -3.6055 0.2065 11 6 2.9392 -4.1147 -0.7880 12 6 2.3234 -4.7471 -1.9652 13 7 1.4279 -3.7890 -2.6555 14 6 1.8373 -3.1790 -3.7855 15 8 2.9384 -3.4139 -4.2366 16 6 0.9271 -2.2051 -4.4884 17 6 1.6178 -1.6676 -5.7151 18 6 2.3946 -0.5150 -5.6149 19 6 3.0307 -0.0044 -6.7048 20 6 2.9026 -0.6466 -7.9471 21 6 3.5436 -0.1506 -9.0981 22 6 3.3736 -0.8270 -10.2724 23 6 2.5826 -1.9735 -10.3060 24 7 1.9872 -2.4325 -9.2323 25 6 2.1125 -1.8180 -8.0517 26 6 1.4725 -2.3153 -6.9030 27 6 0.1265 -3.5056 -2.1184 28 6 0.1302 -2.3134 -1.1374 29 1 -0.4851 0.8401 -0.0004 30 1 1.0788 -4.3364 0.2967 31 1 2.3421 -3.4412 1.1810 32 1 3.5768 -4.8428 -0.2866 33 1 3.5507 -3.2740 -1.1159 34 1 1.7463 -5.6156 -1.6475 35 1 3.1076 -5.0667 -2.6515 36 1 0.6881 -1.3811 -3.8160 37 1 0.0083 -2.7131 -4.7814 38 1 2.4934 -0.0203 -4.6600 39 1 3.6303 0.8893 -6.6147 40 1 4.1531 0.7399 -9.0537 41 1 3.8510 -0.4730 -11.1741 42 1 2.4567 -2.4980 -11.2418 43 1 0.8631 -3.2049 -6.9642 44 1 -0.5524 -3.2778 -2.9402 45 1 -0.2395 -4.3895 -1.5959 46 1 -0.7499 -2.3652 -0.4964 47 1 0.1159 -1.3798 -1.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981433778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 51.215690 kcal Electronic energy + Delta-G solvation = -29730.149896 eV Core-core repulsion = 25878.603004 eV Total energy + Delta-G solvation = -3851.546892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85348 -39.75708 -37.55954 -36.66064 -34.22877 -33.68952 -32.96073 -31.72897 -30.86799 -30.08501 -28.10613 -27.35085 -25.39530 -24.07695 -23.68979 -23.13342 -22.12060 -21.53787 -19.77740 -18.57242 -17.79731 -17.11666 -16.98650 -16.83410 -16.21537 -15.85143 -15.16017 -14.64218 -14.46694 -14.35923 -14.26140 -14.05540 -13.86136 -13.65113 -13.33615 -13.09737 -13.01432 -12.69996 -12.50980 -12.28393 -11.96067 -11.71314 -11.55141 -11.43819 -11.31258 -11.24494 -11.01421 -10.80734 -10.56598 -10.54962 -10.25883 -10.18301 -9.87721 -9.72352 -9.53681 -9.35839 -8.61741 -8.51613 -8.18792 -8.04349 -6.73970 -5.83529 -3.25003 0.41261 0.82286 2.02328 2.90220 3.11809 3.32871 3.41091 3.42520 3.58689 4.14723 4.23511 4.46345 4.55761 4.67037 4.81426 4.85157 5.03423 5.04656 5.12691 5.25789 5.36895 5.37864 5.43409 5.53887 5.57684 5.65897 5.76066 5.79940 5.82901 5.91615 5.93535 5.98217 6.09397 6.13815 6.14854 6.29486 6.41954 6.44439 6.50658 6.53373 6.63728 6.80895 6.88388 6.92171 7.03877 7.34443 7.45338 7.76745 7.88437 7.97885 8.39779 8.68249 9.16894 9.84382 10.29642 11.24352 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003549 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.625125 B = 7887.836910 C = 9212.980128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.130 3.870 13 N -0.584 5.584 14 C 0.525 3.475 15 O -0.550 6.550 16 C -0.109 4.109 17 C -0.031 4.031 18 C -0.090 4.090 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.056 4.056 22 C -0.184 4.184 23 C 0.123 3.877 24 N -0.474 5.474 25 C 0.129 3.871 26 C -0.086 4.086 27 C 0.078 3.922 28 C 0.163 3.837 29 H 0.253 0.747 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -3.841 -14.783 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.194 4.194 3 Si 0.728 3.272 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.313 3.687 15 O -0.429 6.429 16 C -0.148 4.148 17 C -0.033 4.033 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.083 4.083 22 C -0.204 4.204 23 C -0.050 4.050 24 N -0.182 5.182 25 C 0.008 3.992 26 C -0.105 4.105 27 C -0.048 4.048 28 C 0.037 3.963 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.227 -4.618 -14.913 15.660 hybrid contribution 0.983 1.795 0.181 2.055 sum 2.210 -2.823 -14.732 15.162 Atomic orbital electron populations 1.70006 1.05025 1.25366 1.55006 1.24940 0.95298 0.98079 1.01096 0.86357 0.79204 0.83941 0.77726 1.21495 1.21756 1.20533 1.19197 0.92124 0.84852 1.41787 0.91809 1.43649 1.29029 1.01993 1.56569 1.20282 0.93682 0.88377 0.94256 1.21878 1.00801 1.00708 0.97714 1.20526 0.93618 0.90425 0.94540 1.47358 1.17100 1.43117 1.23982 1.20197 0.87274 0.80624 0.80603 1.90658 1.21721 1.63823 1.66652 1.20842 0.98454 1.00205 0.95348 1.19152 0.96089 0.94326 0.93736 1.20945 0.95311 0.95304 0.99194 1.20912 0.99836 0.99908 0.91405 1.18837 0.99621 0.96957 0.95027 1.21462 0.96277 0.98712 0.91802 1.21813 1.01759 0.97811 0.99032 1.22886 0.92176 0.93246 0.96722 1.68002 1.20716 1.30917 0.98525 1.18774 0.96101 0.92107 0.92176 1.20541 1.00003 0.99653 0.90254 1.22135 0.83227 1.01028 0.98387 1.21854 0.88924 0.94686 0.90808 0.93673 0.94839 0.93657 0.92718 0.91358 0.92174 0.90568 0.86744 0.88067 0.85047 0.85230 0.84620 0.84843 0.82725 0.85002 0.91567 0.92025 0.93950 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.60 10.90 55.49 0.60 -23.99 16 2 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 3 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.52 9.27 -15.06 -0.14 -6.66 16 8 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -13.63 2.54 -172.29 -0.44 -14.07 16 10 C 0.16 3.20 5.63 -5.24 -0.03 3.17 16 11 C -0.17 -3.03 5.64 -29.13 -0.16 -3.19 16 12 C 0.13 2.16 5.70 -5.92 -0.03 2.13 16 13 N -0.58 -10.19 2.47 -176.97 -0.44 -10.63 16 14 C 0.53 9.67 7.66 -10.98 -0.08 9.59 16 15 O -0.55 -11.82 15.47 5.55 0.09 -11.74 16 16 C -0.11 -1.68 4.35 -29.03 -0.13 -1.81 16 17 C -0.03 -0.48 4.34 -104.99 -0.46 -0.94 16 18 C -0.09 -1.39 9.59 -39.92 -0.38 -1.77 16 19 C -0.10 -1.40 9.78 -39.51 -0.39 -1.79 16 20 C -0.10 -1.43 5.74 -106.80 -0.61 -2.04 16 21 C -0.06 -0.61 9.90 -39.23 -0.39 -1.00 16 22 C -0.18 -1.76 10.03 -39.77 -0.40 -2.16 16 23 C 0.12 1.35 11.14 -17.47 -0.19 1.16 16 24 N -0.47 -6.87 10.34 -10.97 -0.11 -6.98 16 25 C 0.13 1.99 6.60 -84.86 -0.56 1.43 16 26 C -0.09 -1.33 9.58 -39.47 -0.38 -1.71 16 27 C 0.08 1.28 5.01 -4.84 -0.02 1.25 16 28 C 0.16 3.44 5.17 -2.01 -0.01 3.43 16 29 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.03 0.60 7.58 -51.93 -0.39 0.21 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.45 7.91 -51.92 -0.41 1.04 16 34 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 36 H 0.11 1.85 7.25 -51.93 -0.38 1.48 16 37 H 0.10 1.27 7.30 -51.93 -0.38 0.90 16 38 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.07 0.92 6.38 -51.93 -0.33 0.59 16 45 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 46 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 47 H 0.08 1.79 5.72 -51.93 -0.30 1.50 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -32.13 376.43 -10.83 -42.96 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.72 Total: 3.59 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.46 Total: -0.92 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.38 Total: -55.67 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.13 -10.83 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981433778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.172 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds