Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47375 * 269.99860 * 3 2 1 5 5 H 1.48506 * 109.46968 * 30.00026 * 3 2 1 6 6 H 1.48510 * 109.47076 * 149.99520 * 3 2 1 7 7 C 1.38819 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 194.64194 * 7 2 1 9 9 N 1.36937 * 119.99992 * 14.64332 * 7 2 1 10 10 C 1.43460 * 118.94024 * 204.97005 * 9 7 2 11 11 C 1.53798 * 107.96402 * 273.62608 * 10 9 7 12 12 C 1.47138 * 111.83868 * 281.67797 * 11 10 9 13 13 N 1.48207 * 110.34772 * 58.29084 * 12 11 10 14 14 C 1.34778 * 119.96991 * 102.46674 * 13 12 11 15 15 O 1.21285 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00013 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.46973 * 179.97438 * 16 14 13 18 18 C 1.39352 * 119.47102 * 269.97691 * 17 16 14 19 19 C 1.36135 * 120.87220 * 180.02562 * 18 17 16 20 20 C 1.40427 * 119.61158 * 0.02562 * 19 18 17 21 21 C 1.40769 * 121.37697 * 179.97438 * 20 19 18 22 22 C 1.36576 * 118.15448 * 180.02562 * 21 20 19 23 23 C 1.39332 * 119.92983 * 0.02562 * 22 21 20 24 24 N 1.31080 * 121.75410 * 359.97438 * 23 22 21 25 25 C 1.33686 * 121.31998 * 0.02562 * 24 23 22 26 26 C 1.36077 * 119.46433 * 90.00610 * 17 16 14 27 27 C 1.43617 * 120.05801 * 282.73891 * 13 12 11 28 28 C 1.48863 * 118.94040 * 24.94491 * 9 7 2 29 29 H 0.97005 * 120.00243 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.76511 * 154.00846 * 10 9 7 31 31 H 1.09000 * 109.80606 * 33.26841 * 10 9 7 32 32 H 1.09000 * 109.00772 * 161.06374 * 11 10 9 33 33 H 1.09009 * 108.94140 * 42.23750 * 11 10 9 34 34 H 1.09002 * 109.32008 * 298.01829 * 12 11 10 35 35 H 1.09004 * 109.18178 * 178.47350 * 12 11 10 36 36 H 1.09000 * 109.46836 * 59.99891 * 16 14 13 37 37 H 1.09000 * 109.47117 * 300.00358 * 16 14 13 38 38 H 1.08002 * 119.56435 * 0.02843 * 18 17 16 39 39 H 1.07998 * 120.19731 * 180.02562 * 19 18 17 40 40 H 1.08004 * 120.92294 * 0.04688 * 21 20 19 41 41 H 1.07999 * 120.03468 * 179.97438 * 22 21 20 42 42 H 1.08009 * 119.12204 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.12141 * 0.24852 * 26 17 16 44 44 H 1.08999 * 108.87846 * 211.19443 * 27 13 12 45 45 H 1.09004 * 108.87431 * 329.63515 * 27 13 12 46 46 H 1.09004 * 109.47696 * 260.60602 * 28 9 7 47 47 H 1.08997 * 109.48083 * 20.62272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0639 -1.2172 0.2370 9 7 1.3589 -2.3690 -0.2987 10 6 1.8823 -3.6055 0.2065 11 6 2.9392 -4.1147 -0.7880 12 6 2.3234 -4.7471 -1.9652 13 7 1.4279 -3.7890 -2.6555 14 6 1.8373 -3.1790 -3.7855 15 8 2.9384 -3.4139 -4.2366 16 6 0.9271 -2.2051 -4.4884 17 6 1.6178 -1.6676 -5.7151 18 6 2.3946 -0.5150 -5.6149 19 6 3.0307 -0.0044 -6.7048 20 6 2.9026 -0.6466 -7.9471 21 6 3.5436 -0.1506 -9.0981 22 6 3.3736 -0.8270 -10.2724 23 6 2.5826 -1.9735 -10.3060 24 7 1.9872 -2.4325 -9.2323 25 6 2.1125 -1.8180 -8.0517 26 6 1.4725 -2.3153 -6.9030 27 6 0.1265 -3.5056 -2.1184 28 6 0.1302 -2.3134 -1.1374 29 1 -0.4851 0.8401 -0.0004 30 1 1.0788 -4.3364 0.2967 31 1 2.3421 -3.4412 1.1810 32 1 3.5768 -4.8428 -0.2866 33 1 3.5507 -3.2740 -1.1159 34 1 1.7463 -5.6156 -1.6475 35 1 3.1076 -5.0667 -2.6515 36 1 0.6881 -1.3811 -3.8160 37 1 0.0083 -2.7131 -4.7814 38 1 2.4934 -0.0203 -4.6600 39 1 3.6303 0.8893 -6.6147 40 1 4.1531 0.7399 -9.0537 41 1 3.8510 -0.4730 -11.1741 42 1 2.4567 -2.4980 -11.2418 43 1 0.8631 -3.2049 -6.9642 44 1 -0.5524 -3.2778 -2.9402 45 1 -0.2395 -4.3895 -1.5959 46 1 -0.7499 -2.3652 -0.4964 47 1 0.1159 -1.3798 -1.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981433778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = 33.572266 kcal Electronic energy + Delta-G solvation = -29730.914973 eV Core-core repulsion = 25878.603004 eV Total energy + Delta-G solvation = -3852.311969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88114 -41.12396 -38.86811 -37.99959 -35.90644 -34.77323 -34.35667 -32.99886 -32.53518 -31.11038 -29.48021 -28.78970 -26.98389 -25.43715 -25.05194 -24.29220 -23.18332 -22.82492 -21.46139 -19.94021 -18.85127 -18.77942 -18.01703 -17.93021 -17.72000 -17.32272 -16.64170 -16.21240 -15.64097 -15.58465 -15.44019 -15.33239 -15.21322 -15.09474 -14.76463 -14.43584 -13.94630 -13.92574 -13.90120 -13.80850 -13.41227 -13.18066 -12.95408 -12.84672 -12.64981 -12.51582 -12.46666 -12.32902 -12.30129 -12.05655 -11.69747 -11.65625 -11.50277 -11.41976 -10.81708 -10.47386 -10.45897 -9.65989 -9.52007 -9.22510 -8.62945 -7.84032 -5.26513 -0.54859 -0.17274 1.02636 1.41786 1.45145 1.51653 1.66290 1.87975 2.29355 2.51461 3.12403 3.28658 3.28820 3.59889 3.65812 3.71194 3.79309 3.88962 4.01267 4.07241 4.12726 4.18716 4.24696 4.29705 4.35749 4.47404 4.53421 4.57801 4.59256 4.62621 4.76396 4.83199 4.86828 4.94574 5.01064 5.04817 5.06926 5.12455 5.25401 5.32276 5.37811 5.49467 5.50998 5.59083 5.62725 5.75264 5.83762 5.88490 6.41533 6.56267 6.95743 7.20249 7.26265 7.97921 8.35285 9.19971 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003549 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.625125 B = 7887.836910 C = 9212.980128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.037 4.037 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.256 4.256 8 H 0.049 0.951 9 N -0.605 5.605 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.127 3.873 13 N -0.585 5.585 14 C 0.519 3.481 15 O -0.586 6.586 16 C -0.100 4.100 17 C -0.045 4.045 18 C -0.121 4.121 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.060 4.060 22 C -0.172 4.172 23 C 0.124 3.876 24 N -0.509 5.509 25 C 0.105 3.895 26 C -0.098 4.098 27 C 0.088 3.912 28 C 0.170 3.830 29 H 0.249 0.751 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.191 0.809 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.024 0.976 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -4.476 -17.114 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.776 3.224 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.387 4.387 8 H 0.067 0.933 9 N -0.328 5.328 10 C 0.032 3.968 11 C -0.195 4.195 12 C 0.006 3.994 13 N -0.316 5.316 14 C 0.308 3.692 15 O -0.467 6.467 16 C -0.140 4.140 17 C -0.047 4.047 18 C -0.139 4.139 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.086 4.086 22 C -0.191 4.191 23 C -0.048 4.048 24 N -0.218 5.218 25 C -0.015 4.015 26 C -0.117 4.117 27 C -0.037 4.037 28 C 0.044 3.956 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.195 0.805 42 H 0.207 0.793 43 H 0.153 0.847 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.042 0.958 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.610 -5.278 -17.227 18.089 hybrid contribution 0.951 1.967 0.782 2.320 sum 2.560 -3.311 -16.445 16.969 Atomic orbital electron populations 1.70120 1.05735 1.25440 1.56030 1.25438 0.95983 1.00196 1.01687 0.85589 0.78160 0.81173 0.77502 1.21379 1.21848 1.20494 1.19300 0.91741 0.86471 1.41204 0.93302 1.43883 1.29347 1.02198 1.57336 1.20425 0.94683 0.87674 0.94058 1.21685 1.00025 0.99853 0.97967 1.20644 0.94007 0.91188 0.93555 1.47498 1.17551 1.42876 1.23629 1.20699 0.87108 0.80554 0.80815 1.90628 1.23298 1.65057 1.67726 1.20787 0.99022 0.99224 0.94927 1.19173 0.96821 0.94784 0.93899 1.20968 0.97291 0.96264 0.99413 1.21206 0.98870 1.00233 0.90976 1.19114 1.00230 0.96927 0.96177 1.21886 0.95922 0.99741 0.91044 1.22294 1.00280 0.96465 1.00110 1.23656 0.90671 0.93561 0.96931 1.68023 1.22625 1.32061 0.99066 1.18976 0.96823 0.93031 0.92635 1.20631 1.00586 0.99891 0.90556 1.22007 0.83346 0.99924 0.98461 1.21681 0.87389 0.95660 0.90830 0.94124 0.92295 0.94766 0.89807 0.95620 0.88461 0.91330 0.88013 0.85191 0.86483 0.82790 0.81497 0.80522 0.79265 0.84746 0.88713 0.89290 0.95809 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.45 10.90 21.65 0.24 -51.21 16 2 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 3 Si 0.95 44.58 29.58 68.60 2.03 46.61 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -13.79 9.27 84.04 0.78 -13.01 16 8 H 0.05 2.72 7.87 -2.91 -0.02 2.70 16 9 N -0.61 -28.29 2.54 -699.01 -1.77 -30.06 16 10 C 0.16 6.14 5.63 87.21 0.49 6.63 16 11 C -0.15 -5.39 5.64 29.04 0.16 -5.23 16 12 C 0.13 4.01 5.70 84.23 0.48 4.49 16 13 N -0.59 -19.93 2.47 -832.20 -2.05 -21.98 16 14 C 0.52 19.39 7.66 87.66 0.67 20.06 16 15 O -0.59 -25.92 15.47 -3.04 -0.05 -25.97 16 16 C -0.10 -3.18 4.35 29.10 0.13 -3.06 16 17 C -0.04 -1.46 4.34 -20.10 -0.09 -1.55 16 18 C -0.12 -3.97 9.59 22.05 0.21 -3.76 16 19 C -0.09 -2.61 9.78 22.31 0.22 -2.40 16 20 C -0.12 -3.32 5.74 -21.28 -0.12 -3.45 16 21 C -0.06 -1.13 9.90 22.50 0.22 -0.91 16 22 C -0.17 -2.61 10.03 22.14 0.22 -2.39 16 23 C 0.12 2.38 11.14 85.07 0.95 3.32 16 24 N -0.51 -14.26 10.34 -188.63 -1.95 -16.21 16 25 C 0.11 3.25 6.60 40.29 0.27 3.52 16 26 C -0.10 -3.12 9.58 22.34 0.21 -2.91 16 27 C 0.09 2.74 5.01 87.39 0.44 3.17 16 28 C 0.17 7.22 5.17 86.39 0.45 7.66 16 29 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 30 H 0.06 1.98 7.58 -2.39 -0.02 1.97 16 31 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.02 1.10 7.91 -2.38 -0.02 1.08 16 34 H 0.10 2.39 8.06 -2.39 -0.02 2.37 16 35 H 0.07 2.31 7.12 -2.38 -0.02 2.29 16 36 H 0.10 3.48 7.25 -2.39 -0.02 3.47 16 37 H 0.13 3.22 7.30 -2.39 -0.02 3.20 16 38 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.09 2.45 6.38 -2.39 -0.02 2.43 16 45 H 0.09 2.35 7.73 -2.38 -0.02 2.33 16 46 H 0.02 1.09 8.00 -2.39 -0.02 1.08 16 47 H 0.05 2.28 5.72 -2.39 -0.01 2.26 16 Total: -1.00 -73.61 376.43 3.52 -70.08 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.97 Total: 20.14 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.11 Total: 8.60 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.54 Total: -119.47 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.61 3.52 -70.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981433778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.657 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds