Wall clock time and date at job start Sat Apr 11 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00438 * 2 1 4 4 H 1.48492 * 109.47299 * 270.00563 * 3 2 1 5 5 H 1.48495 * 109.46700 * 30.00657 * 3 2 1 6 6 H 1.48501 * 109.46932 * 150.00211 * 3 2 1 7 7 C 1.38818 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99592 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47012 * 325.00662 * 10 9 7 12 12 C 1.53001 * 109.47122 * 85.00280 * 10 9 7 13 13 C 1.52995 * 109.47244 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47051 * 299.99813 * 13 12 10 15 15 C 1.53001 * 109.47301 * 60.00417 * 14 13 12 16 16 H 1.08997 * 109.47855 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47528 * 59.99267 * 15 14 13 18 18 C 1.34782 * 119.99697 * 85.00218 * 17 15 14 19 19 O 1.21552 * 119.99819 * 0.02562 * 18 17 15 20 20 C 1.47885 * 120.00233 * 180.02562 * 18 17 15 21 21 C 1.40606 * 119.72587 * 0.27062 * 20 18 17 22 22 C 1.35849 * 120.94927 * 180.28634 * 21 20 18 23 23 C 1.40496 * 119.88231 * 359.44252 * 22 21 20 24 24 C 1.40477 * 121.85166 * 180.30131 * 23 22 21 25 25 N 1.31217 * 119.94248 * 179.97438 * 24 23 22 26 26 C 1.32552 * 122.80525 * 0.02562 * 25 24 23 27 27 C 1.36217 * 121.84679 * 359.97438 * 26 25 24 28 28 C 1.40760 * 118.67176 * 0.03771 * 27 26 25 29 29 C 1.38523 * 119.73363 * 180.02562 * 20 18 17 30 30 C 1.52998 * 109.46868 * 205.00273 * 10 9 7 31 31 H 0.97005 * 119.99512 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00373 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46805 * 59.99540 * 12 10 9 34 34 H 1.09001 * 109.46925 * 300.00243 * 12 10 9 35 35 H 1.09002 * 109.46797 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46938 * 60.00353 * 13 12 10 37 37 H 1.08998 * 109.47690 * 300.00079 * 14 13 12 38 38 H 1.09004 * 109.47109 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00619 * 265.01006 * 17 15 14 40 40 H 1.07997 * 119.52739 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.06143 * 179.72492 * 22 21 20 42 42 H 1.08004 * 120.03031 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.07637 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.66573 * 179.97438 * 27 26 25 45 45 H 1.08008 * 120.36278 * 0.02562 * 29 20 18 46 46 H 1.08992 * 109.47503 * 60.00531 * 30 10 9 47 47 H 1.08998 * 109.47320 * 299.99559 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9686 -3.5507 -0.5899 12 6 2.4217 -4.0358 1.4365 13 6 3.1860 -5.3611 1.4366 14 6 2.3083 -6.4561 0.8272 15 6 1.9445 -6.0773 -0.6099 16 1 1.3188 -6.8571 -1.0440 17 7 3.1685 -5.9351 -1.4022 18 6 3.7345 -7.0194 -1.9684 19 8 3.2291 -8.1151 -1.8219 20 6 4.9704 -6.8760 -2.7678 21 6 5.5533 -5.6066 -2.9288 22 6 6.6851 -5.4455 -3.6626 23 6 7.2946 -6.5600 -4.2630 24 6 8.4688 -6.4419 -5.0250 25 7 9.0068 -7.5081 -5.5687 26 6 8.4894 -8.7211 -5.4351 27 6 7.3535 -8.9429 -4.7166 28 6 6.7178 -7.8471 -4.1031 29 6 5.5471 -7.9941 -3.3476 30 6 1.1806 -4.7521 -0.6102 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.5109 -4.1419 2.0259 34 1 3.0466 -3.2554 1.8708 35 1 3.4455 -5.6307 2.4603 36 1 4.0967 -5.2553 0.8471 37 1 1.3975 -6.5619 1.4166 38 1 2.8530 -7.4002 0.8268 39 1 3.5716 -5.0607 -1.5194 40 1 5.0923 -4.7467 -2.4659 41 1 7.1182 -4.4632 -3.7805 42 1 8.9289 -5.4744 -5.1626 43 1 8.9822 -9.5570 -5.9091 44 1 6.9483 -9.9393 -4.6206 45 1 5.0989 -8.9683 -3.2192 46 1 0.9215 -4.4823 -1.6339 47 1 0.2699 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981435689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:33 Heat of formation + Delta-G solvation = 17.622025 kcal Electronic energy + Delta-G solvation = -28610.749023 eV Core-core repulsion = 24757.745400 eV Total energy + Delta-G solvation = -3853.003623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24633 -40.14989 -38.25437 -37.10891 -34.59220 -33.45298 -33.13589 -31.70957 -31.18372 -29.96562 -29.54722 -27.92329 -25.28925 -24.12466 -23.77718 -22.72152 -22.12446 -21.47257 -21.03267 -19.04352 -18.59725 -17.94992 -17.24877 -16.85020 -16.47906 -15.61767 -15.45291 -15.27872 -15.02631 -14.54274 -14.43594 -14.27450 -14.01306 -13.95924 -13.77526 -13.53490 -13.17985 -13.07626 -12.73360 -12.57194 -12.29169 -12.08959 -11.91541 -11.79231 -11.43429 -11.04952 -10.93703 -10.83489 -10.60252 -10.43780 -10.24246 -10.23810 -10.09993 -9.82782 -9.80473 -9.58305 -9.46468 -9.01626 -8.90375 -8.45260 -7.02942 -5.83011 -3.12257 -0.12202 0.35058 1.50382 2.26794 3.07620 3.17009 3.38232 3.43513 3.45532 3.75593 4.04237 4.16139 4.32428 4.40700 4.51037 4.53834 4.66140 4.79433 4.86044 4.99726 5.04483 5.12370 5.22532 5.32321 5.36502 5.43745 5.52676 5.57453 5.63270 5.68206 5.69983 5.80820 5.91271 5.93212 5.95630 6.00501 6.04784 6.18695 6.23281 6.24589 6.36707 6.43549 6.51152 6.58040 6.65978 6.87661 7.02478 7.47488 7.59393 7.62424 8.12345 8.35212 9.46565 10.03703 10.38077 11.39448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.002718 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.827001 B =10300.604554 C =12044.436211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.151 3.849 16 H 0.086 0.914 17 N -0.709 5.709 18 C 0.555 3.445 19 O -0.541 6.541 20 C -0.109 4.109 21 C -0.093 4.093 22 C -0.088 4.088 23 C -0.098 4.098 24 C 0.145 3.855 25 N -0.485 5.485 26 C 0.071 3.929 27 C -0.145 4.145 28 C -0.035 4.035 29 C -0.046 4.046 30 C -0.135 4.135 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 -16.809 -6.940 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.104 0.896 17 N -0.361 5.361 18 C 0.341 3.659 19 O -0.419 6.419 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.100 4.100 24 C -0.027 4.027 25 N -0.193 5.193 26 C -0.072 4.072 27 C -0.165 4.165 28 C -0.040 4.040 29 C -0.065 4.065 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.159 0.841 45 H 0.164 0.836 46 H 0.089 0.911 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.878 -17.479 -7.347 23.496 hybrid contribution -0.475 1.359 0.568 1.547 sum 13.403 -16.120 -6.779 22.032 Atomic orbital electron populations 1.69661 1.05113 1.25708 1.57461 1.24749 0.95500 0.97701 1.02922 0.86220 0.78679 0.83947 0.77517 1.21711 1.21782 1.20766 1.19201 0.90901 0.84083 1.42953 0.91245 1.42421 1.05804 0.99657 1.88598 1.20134 0.93801 0.86022 0.92934 0.94266 1.22295 0.99852 0.95170 1.00459 1.21507 0.98430 0.95640 0.99810 1.21900 1.00678 0.98625 0.95397 1.21004 0.84913 0.98557 0.90864 0.89598 1.46157 1.27969 1.10242 1.51747 1.18221 0.83787 0.84643 0.79202 1.90759 1.63764 1.25830 1.61569 1.20103 0.96537 0.94274 1.00381 1.21078 0.95760 0.96454 0.97884 1.20928 0.95387 0.98180 0.96297 1.19178 0.97303 0.93801 0.99745 1.23287 0.90776 0.97700 0.90943 1.67399 1.32730 0.99286 1.19888 1.22200 0.93679 0.94485 0.96801 1.21993 0.96983 0.99161 0.98315 1.18143 0.95256 0.93184 0.97407 1.21417 0.92759 0.99205 0.93136 1.22138 0.99366 0.93484 1.02349 0.93471 0.78214 0.92480 0.92022 0.92776 0.92696 0.90989 0.92047 0.75922 0.84766 0.84063 0.81666 0.82850 0.84134 0.83610 0.91141 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.29 9.93 -15.05 -0.15 -6.44 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.72 -16.90 5.12 -53.42 -0.27 -17.17 16 10 C 0.18 3.20 2.60 -67.93 -0.18 3.03 16 11 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 12 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.55 5.76 -26.74 -0.15 -1.70 16 14 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 15 C 0.15 2.00 2.78 -67.95 -0.19 1.81 16 16 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 17 N -0.71 -8.85 4.18 -54.76 -0.23 -9.08 16 18 C 0.55 7.35 7.73 -12.31 -0.10 7.25 16 19 O -0.54 -8.64 15.97 5.32 0.08 -8.56 16 20 C -0.11 -1.22 5.87 -104.95 -0.62 -1.84 16 21 C -0.09 -0.89 9.44 -39.54 -0.37 -1.26 16 22 C -0.09 -0.74 9.77 -39.59 -0.39 -1.13 16 23 C -0.10 -0.92 5.75 -106.78 -0.61 -1.53 16 24 C 0.14 1.25 11.04 -16.97 -0.19 1.06 16 25 N -0.49 -4.79 10.29 -13.15 -0.14 -4.93 16 26 C 0.07 0.60 11.07 -17.97 -0.20 0.40 16 27 C -0.14 -1.20 9.88 -39.36 -0.39 -1.58 16 28 C -0.03 -0.34 5.74 -106.83 -0.61 -0.96 16 29 C -0.05 -0.49 9.38 -38.78 -0.36 -0.85 16 30 C -0.13 -2.02 5.07 -26.75 -0.14 -2.15 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.38 9.67 7.80 -40.82 -0.32 9.35 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 4.69 4.85 -40.82 -0.20 4.49 16 40 H 0.13 1.13 6.34 -52.49 -0.33 0.80 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.15 1.47 7.62 -52.48 -0.40 1.07 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -32.06 381.51 -10.71 -42.77 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.57 Total: 11.71 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -5.04 Total: -10.54 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.09 Total: -57.71 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.06 -10.71 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981435689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.390 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds