Wall clock time and date at job start Sat Apr 11 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00438 * 2 1 4 4 H 1.48492 * 109.47299 * 270.00563 * 3 2 1 5 5 H 1.48495 * 109.46700 * 30.00657 * 3 2 1 6 6 H 1.48501 * 109.46932 * 150.00211 * 3 2 1 7 7 C 1.38818 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99592 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47012 * 325.00662 * 10 9 7 12 12 C 1.53001 * 109.47122 * 85.00280 * 10 9 7 13 13 C 1.52995 * 109.47244 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47051 * 299.99813 * 13 12 10 15 15 C 1.53001 * 109.47301 * 60.00417 * 14 13 12 16 16 H 1.08997 * 109.47855 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47528 * 59.99267 * 15 14 13 18 18 C 1.34782 * 119.99697 * 85.00218 * 17 15 14 19 19 O 1.21552 * 119.99819 * 0.02562 * 18 17 15 20 20 C 1.47885 * 120.00233 * 180.02562 * 18 17 15 21 21 C 1.40606 * 119.72587 * 0.27062 * 20 18 17 22 22 C 1.35849 * 120.94927 * 180.28634 * 21 20 18 23 23 C 1.40496 * 119.88231 * 359.44252 * 22 21 20 24 24 C 1.40477 * 121.85166 * 180.30131 * 23 22 21 25 25 N 1.31217 * 119.94248 * 179.97438 * 24 23 22 26 26 C 1.32552 * 122.80525 * 0.02562 * 25 24 23 27 27 C 1.36217 * 121.84679 * 359.97438 * 26 25 24 28 28 C 1.40760 * 118.67176 * 0.03771 * 27 26 25 29 29 C 1.38523 * 119.73363 * 180.02562 * 20 18 17 30 30 C 1.52998 * 109.46868 * 205.00273 * 10 9 7 31 31 H 0.97005 * 119.99512 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00373 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46805 * 59.99540 * 12 10 9 34 34 H 1.09001 * 109.46925 * 300.00243 * 12 10 9 35 35 H 1.09002 * 109.46797 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46938 * 60.00353 * 13 12 10 37 37 H 1.08998 * 109.47690 * 300.00079 * 14 13 12 38 38 H 1.09004 * 109.47109 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00619 * 265.01006 * 17 15 14 40 40 H 1.07997 * 119.52739 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.06143 * 179.72492 * 22 21 20 42 42 H 1.08004 * 120.03031 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.07637 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.66573 * 179.97438 * 27 26 25 45 45 H 1.08008 * 120.36278 * 0.02562 * 29 20 18 46 46 H 1.08992 * 109.47503 * 60.00531 * 30 10 9 47 47 H 1.08998 * 109.47320 * 299.99559 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6525 0.7002 6 1 3.5479 1.4399 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9686 -3.5507 -0.5899 12 6 2.4217 -4.0358 1.4365 13 6 3.1860 -5.3611 1.4366 14 6 2.3083 -6.4561 0.8272 15 6 1.9445 -6.0773 -0.6099 16 1 1.3188 -6.8571 -1.0440 17 7 3.1685 -5.9351 -1.4022 18 6 3.7345 -7.0194 -1.9684 19 8 3.2291 -8.1151 -1.8219 20 6 4.9704 -6.8760 -2.7678 21 6 5.5533 -5.6066 -2.9288 22 6 6.6851 -5.4455 -3.6626 23 6 7.2946 -6.5600 -4.2630 24 6 8.4688 -6.4419 -5.0250 25 7 9.0068 -7.5081 -5.5687 26 6 8.4894 -8.7211 -5.4351 27 6 7.3535 -8.9429 -4.7166 28 6 6.7178 -7.8471 -4.1031 29 6 5.5471 -7.9941 -3.3476 30 6 1.1806 -4.7521 -0.6102 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.5109 -4.1419 2.0259 34 1 3.0466 -3.2554 1.8708 35 1 3.4455 -5.6307 2.4603 36 1 4.0967 -5.2553 0.8471 37 1 1.3975 -6.5619 1.4166 38 1 2.8530 -7.4002 0.8268 39 1 3.5716 -5.0607 -1.5194 40 1 5.0923 -4.7467 -2.4659 41 1 7.1182 -4.4632 -3.7805 42 1 8.9289 -5.4744 -5.1626 43 1 8.9822 -9.5570 -5.9091 44 1 6.9483 -9.9393 -4.6206 45 1 5.0989 -8.9683 -3.2192 46 1 0.9215 -4.4823 -1.6339 47 1 0.2699 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981435689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:32 Heat of formation + Delta-G solvation = -0.936638 kcal Electronic energy + Delta-G solvation = -28611.553787 eV Core-core repulsion = 24757.745400 eV Total energy + Delta-G solvation = -3853.808387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99848 -41.15368 -39.39957 -37.93789 -36.16754 -34.60250 -33.98306 -32.98993 -32.45070 -30.73562 -30.63056 -29.48636 -26.13214 -25.62578 -24.80094 -23.55017 -23.19558 -22.58546 -22.25459 -20.23201 -19.56232 -19.09599 -18.60316 -17.63821 -17.36123 -16.86857 -16.57210 -16.32572 -15.97574 -15.92010 -15.47094 -15.26191 -15.04064 -14.98062 -14.79987 -14.67956 -14.62010 -13.94143 -13.83309 -13.54431 -13.44068 -13.10338 -13.06630 -12.98765 -12.85636 -12.79609 -12.21612 -12.10605 -12.05036 -11.94023 -11.59860 -11.46270 -11.26759 -11.13818 -11.00530 -10.82649 -10.52194 -10.28503 -10.00075 -9.12347 -8.96711 -7.90614 -5.18394 -0.83635 -0.35429 0.80722 1.46374 1.50278 1.50946 1.59018 2.07820 2.31892 2.58817 3.05198 3.43043 3.46573 3.50082 3.52944 3.68949 3.74263 3.82823 3.87354 3.92087 3.99544 4.07816 4.26379 4.30187 4.32134 4.36132 4.55512 4.59478 4.64671 4.68304 4.72143 4.74292 4.81839 4.91682 4.95216 5.02863 5.10039 5.16525 5.21290 5.23290 5.25551 5.37425 5.45861 5.52128 5.56672 5.60530 5.66628 5.70695 6.31437 6.45919 6.95779 7.10312 7.37943 8.14573 8.36542 9.32923 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.002718 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.827001 B =10300.604554 C =12044.436211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.048 0.952 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.158 3.842 16 H 0.084 0.916 17 N -0.704 5.704 18 C 0.556 3.444 19 O -0.573 6.573 20 C -0.122 4.122 21 C -0.104 4.104 22 C -0.078 4.078 23 C -0.109 4.109 24 C 0.144 3.856 25 N -0.507 5.507 26 C 0.065 3.935 27 C -0.149 4.149 28 C -0.050 4.050 29 C -0.052 4.052 30 C -0.122 4.122 31 H 0.248 0.752 32 H 0.372 0.628 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.408 0.592 40 H 0.144 0.856 41 H 0.171 0.829 42 H 0.194 0.806 43 H 0.177 0.823 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.063 0.937 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.631 -17.278 -7.385 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.168 4.168 13 C -0.143 4.143 14 C -0.160 4.160 15 C 0.054 3.946 16 H 0.102 0.898 17 N -0.356 5.356 18 C 0.345 3.655 19 O -0.454 6.454 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.028 4.028 25 N -0.215 5.215 26 C -0.077 4.077 27 C -0.168 4.168 28 C -0.055 4.055 29 C -0.071 4.071 30 C -0.161 4.161 31 H 0.057 0.943 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.162 0.838 41 H 0.189 0.811 42 H 0.211 0.789 43 H 0.194 0.806 44 H 0.178 0.822 45 H 0.161 0.839 46 H 0.082 0.918 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.164 -17.977 -7.790 25.400 hybrid contribution -1.095 1.401 0.662 1.897 sum 15.069 -16.576 -7.129 23.509 Atomic orbital electron populations 1.69817 1.06607 1.25794 1.59976 1.25510 0.96266 1.00949 1.04282 0.85226 0.77787 0.79949 0.77351 1.21484 1.22878 1.19308 1.19604 0.91452 0.85053 1.40192 0.90322 1.42646 1.05457 1.00955 1.88582 1.20368 0.94028 0.84618 0.94065 0.93442 1.22118 0.99502 0.96364 0.98857 1.21410 0.98180 0.93793 1.00935 1.21856 1.00970 0.98305 0.94899 1.20871 0.85109 0.97184 0.91481 0.89777 1.46086 1.27589 1.10455 1.51475 1.18508 0.84115 0.84089 0.78835 1.90737 1.64849 1.26947 1.62823 1.20024 0.96119 0.95398 1.01046 1.21180 0.96402 0.95965 0.98680 1.21245 0.94532 0.99215 0.94775 1.19418 0.97746 0.93914 1.00050 1.23748 0.90353 0.98606 0.90057 1.67457 1.33431 1.00053 1.20583 1.22623 0.93700 0.94847 0.96550 1.22236 0.96899 0.99779 0.97898 1.18358 0.95234 0.94241 0.97657 1.21457 0.93166 0.99042 0.93403 1.21976 0.99125 0.93404 1.01606 0.94279 0.79674 0.93363 0.93886 0.91399 0.92020 0.90176 0.91916 0.75334 0.83842 0.81150 0.78946 0.80577 0.82151 0.83853 0.91846 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.86 13.06 21.65 0.28 -57.57 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.00 9.93 84.03 0.83 -11.16 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -34.40 5.12 -322.92 -1.65 -36.05 16 10 C 0.18 6.13 2.60 44.99 0.12 6.24 16 11 H 0.05 1.57 6.45 -2.39 -0.02 1.56 16 12 C -0.13 -4.09 5.50 30.59 0.17 -3.92 16 13 C -0.10 -2.60 5.76 30.59 0.18 -2.42 16 14 C -0.12 -2.91 5.60 30.59 0.17 -2.74 16 15 C 0.16 4.02 2.78 44.98 0.13 4.14 16 16 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 17 N -0.70 -16.76 4.18 -445.43 -1.86 -18.62 16 18 C 0.56 14.35 7.73 86.80 0.67 15.02 16 19 O -0.57 -18.15 15.97 -3.88 -0.06 -18.21 16 20 C -0.12 -2.63 5.87 -20.08 -0.12 -2.75 16 21 C -0.10 -1.81 9.44 22.29 0.21 -1.60 16 22 C -0.08 -1.13 9.77 22.27 0.22 -0.92 16 23 C -0.11 -1.84 5.75 -21.26 -0.12 -1.96 16 24 C 0.14 2.16 11.04 85.33 0.94 3.10 16 25 N -0.51 -9.06 10.29 -195.51 -2.01 -11.07 16 26 C 0.07 0.98 11.07 84.11 0.93 1.91 16 27 C -0.15 -2.24 9.88 22.42 0.22 -2.02 16 28 C -0.05 -0.93 5.74 -21.29 -0.12 -1.05 16 29 C -0.05 -1.06 9.38 22.79 0.21 -0.85 16 30 C -0.12 -3.58 5.07 30.58 0.16 -3.43 16 31 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.37 19.02 7.80 -92.71 -0.72 18.30 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.46 7.60 -2.39 -0.02 1.44 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.41 8.88 4.85 -92.71 -0.45 8.43 16 40 H 0.14 2.14 6.34 -2.91 -0.02 2.12 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.14 2.91 7.62 -2.91 -0.02 2.88 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.95 381.51 1.81 -67.14 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -0.17 Total: 36.17 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.26 Total: -8.24 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.25 Total: -123.32 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.06 Total: -18.21 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.95 1.81 -67.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981435689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.203 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds