Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48506 * 109.47111 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47398 * 240.00171 * 3 2 1 6 6 H 1.48505 * 109.47114 * 119.99773 * 3 2 1 7 7 C 1.38808 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99972 * 206.36700 * 7 2 1 9 9 N 1.36937 * 120.00153 * 26.36890 * 7 2 1 10 10 C 1.43465 * 118.94229 * 206.91541 * 9 7 2 11 11 C 1.53243 * 108.26443 * 273.78266 * 10 9 7 12 12 C 1.47143 * 111.81020 * 281.67625 * 11 10 9 13 13 N 1.48218 * 110.34233 * 58.22569 * 12 11 10 14 14 C 1.34779 * 119.96794 * 102.46892 * 13 12 11 15 15 O 1.21284 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.36247 * 120.25842 * 264.71699 * 17 16 14 19 19 C 1.39334 * 121.01946 * 179.76629 * 18 17 16 20 20 C 1.36209 * 121.08221 * 0.51658 * 19 18 17 21 21 C 1.40334 * 119.51664 * 359.75056 * 20 19 18 22 22 C 1.40440 * 122.08381 * 179.97438 * 21 20 19 23 23 N 1.31239 * 119.88134 * 180.02562 * 22 21 20 24 24 C 1.32611 * 122.77753 * 359.97438 * 23 22 21 25 25 C 1.36167 * 121.88505 * 359.97438 * 24 23 22 26 26 C 1.40188 * 120.26167 * 84.99353 * 17 16 14 27 27 C 1.43621 * 120.06012 * 282.48465 * 13 12 11 28 28 C 1.48857 * 118.93941 * 27.18883 * 9 7 2 29 29 H 0.97000 * 119.99734 * 185.80483 * 1 2 3 30 30 H 1.09004 * 109.76038 * 33.24739 * 10 9 7 31 31 H 1.08996 * 109.76252 * 154.01099 * 10 9 7 32 32 H 1.09000 * 109.07530 * 161.04210 * 11 10 9 33 33 H 1.08997 * 108.90718 * 42.19517 * 11 10 9 34 34 H 1.08999 * 109.32448 * 297.96052 * 12 11 10 35 35 H 1.08999 * 109.18426 * 178.40342 * 12 11 10 36 36 H 1.09001 * 109.46519 * 299.99598 * 16 14 13 37 37 H 1.08998 * 109.47336 * 59.99462 * 16 14 13 38 38 H 1.08003 * 119.49595 * 0.02740 * 18 17 16 39 39 H 1.07999 * 119.45681 * 180.24598 * 19 18 17 40 40 H 1.07998 * 120.24134 * 179.77087 * 20 19 18 41 41 H 1.08002 * 120.05762 * 359.97438 * 22 21 20 42 42 H 1.08007 * 119.05316 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.66530 * 180.02562 * 25 24 23 44 44 H 1.09000 * 108.87115 * 329.88707 * 27 13 12 45 45 H 1.08995 * 108.87303 * 211.45276 * 27 13 12 46 46 H 1.09008 * 109.47688 * 260.60364 * 28 9 7 47 47 H 1.09000 * 109.47953 * 20.61503 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0060 -1.2506 0.4159 9 7 1.4324 -2.3266 -0.5257 10 6 1.8399 -3.6114 -0.0343 11 6 3.0754 -4.0576 -0.8236 12 6 2.7167 -4.5777 -2.1524 13 7 1.9873 -3.5475 -2.9293 14 6 2.6249 -2.8545 -3.8935 15 8 3.7949 -3.0743 -4.1255 16 6 1.8841 -1.8065 -4.6834 17 6 2.8167 -1.1836 -5.6900 18 6 3.4694 -0.0244 -5.3957 19 6 4.3389 0.5627 -6.3126 20 6 4.5554 0.0020 -7.5350 21 6 3.8964 -1.1892 -7.8757 22 6 4.0794 -1.8132 -9.1205 23 7 3.4406 -2.9265 -9.3940 24 6 2.6123 -3.5080 -8.5372 25 6 2.3676 -2.9836 -7.3046 26 6 3.0150 -1.7892 -6.9387 27 6 0.6018 -3.2869 -2.6553 28 6 0.4061 -2.1767 -1.5934 29 1 -0.4850 -0.8358 0.0850 30 1 2.0911 -3.5385 1.0239 31 1 1.0340 -4.3318 -0.1737 32 1 3.5925 -4.8377 -0.2647 33 1 3.7440 -3.2054 -0.9446 34 1 2.0838 -5.4575 -2.0367 35 1 3.6259 -4.8552 -2.6858 36 1 1.0447 -2.2690 -5.2027 37 1 1.5132 -1.0364 -4.0070 38 1 3.3138 0.4445 -4.4353 39 1 4.8462 1.4796 -6.0515 40 1 5.2294 0.4706 -8.2367 41 1 4.7439 -1.3771 -9.8517 42 1 2.1182 -4.4243 -8.8250 43 1 1.6894 -3.4740 -6.6220 44 1 0.1347 -4.2042 -2.2967 45 1 0.1110 -2.9816 -3.5793 46 1 -0.5886 -2.2632 -1.1561 47 1 0.5121 -1.1997 -2.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981445912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 48.469766 kcal Electronic energy + Delta-G solvation = -30295.118898 eV Core-core repulsion = 26443.452933 eV Total energy + Delta-G solvation = -3851.665965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.00934 -39.78193 -37.61597 -36.97470 -34.48656 -33.95943 -32.91723 -31.31008 -30.89213 -30.44669 -28.09939 -27.27320 -25.27073 -24.19379 -23.76900 -23.57956 -22.45739 -20.91521 -19.82661 -18.58596 -18.03634 -17.51147 -17.10018 -16.80055 -16.57891 -15.94934 -15.32871 -14.78720 -14.48065 -14.39442 -14.25872 -14.11506 -13.80348 -13.68250 -13.61396 -13.26022 -12.97036 -12.71630 -12.67241 -12.41047 -12.27080 -11.95566 -11.91595 -11.54799 -11.32750 -11.14955 -11.00517 -10.76516 -10.39367 -10.34817 -10.32129 -10.14773 -10.06335 -9.53936 -9.46227 -9.42288 -9.01108 -8.39217 -8.20893 -8.00212 -6.95336 -6.12934 -3.30501 0.34383 0.93178 1.90081 2.95299 3.05533 3.43378 3.44844 3.46395 3.64778 4.08410 4.32733 4.45015 4.53506 4.69843 4.78088 4.86707 4.90516 4.98677 5.04473 5.13967 5.24782 5.30818 5.36310 5.44607 5.47456 5.54805 5.63053 5.66324 5.78460 5.81162 5.82695 5.88511 5.91879 6.02048 6.03714 6.11406 6.30543 6.39365 6.40682 6.55903 6.59553 6.60412 6.71263 6.84430 6.85640 6.88970 7.12042 7.81205 7.91846 8.00122 8.50578 8.55323 9.08973 9.77725 10.17104 11.13294 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004111 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.218449 B = 6809.476531 C = 8146.935357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.054 2.946 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.352 4.352 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.165 3.835 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.586 5.586 14 C 0.525 3.475 15 O -0.545 6.545 16 C -0.107 4.107 17 C -0.049 4.049 18 C -0.085 4.085 19 C -0.109 4.109 20 C -0.097 4.097 21 C -0.111 4.111 22 C 0.142 3.858 23 N -0.493 5.493 24 C 0.069 3.931 25 C -0.146 4.146 26 C -0.007 4.007 27 C 0.086 3.914 28 C 0.137 3.863 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -4.544 -13.588 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.220 4.220 3 Si 0.883 3.117 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.482 4.482 8 H 0.071 0.929 9 N -0.316 5.316 10 C 0.037 3.963 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.317 5.317 14 C 0.313 3.687 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.029 4.029 23 N -0.201 5.201 24 C -0.074 4.074 25 C -0.165 4.165 26 C -0.012 4.012 27 C -0.040 4.040 28 C 0.011 3.989 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.161 -3.551 -14.529 15.287 hybrid contribution 0.058 -1.229 1.265 1.764 sum 3.219 -4.780 -13.264 14.462 Atomic orbital electron populations 1.70826 1.06568 1.30140 1.47835 1.25698 0.96374 1.01189 0.98782 0.83686 0.75020 0.76539 0.76410 1.21031 1.22095 1.21947 1.19914 0.98543 0.89255 1.40452 0.92911 1.43653 1.46913 1.01786 1.39253 1.20171 0.92947 0.87407 0.95816 1.21748 1.01980 1.01062 0.96186 1.20551 0.96837 0.89092 0.92629 1.47350 1.11483 1.38091 1.34805 1.20210 0.87094 0.81336 0.80070 1.90665 1.16184 1.66814 1.68584 1.20764 0.97771 0.98993 0.97101 1.19100 0.98028 0.94902 0.92910 1.20997 0.94838 0.94982 0.99633 1.20918 0.97933 1.00193 0.93622 1.20914 0.99086 0.94457 0.97202 1.18967 0.99152 0.97322 0.95853 1.23127 0.95549 0.90650 0.93620 1.67379 1.07487 1.10157 1.35070 1.22073 0.95660 0.99386 0.90264 1.21868 1.00862 0.95858 0.97960 1.17938 0.95395 0.94403 0.93503 1.21993 0.81557 1.00634 0.99786 1.22108 0.92208 0.96582 0.88008 0.92074 0.93512 0.95092 0.92577 0.91235 0.92122 0.90438 0.88284 0.86866 0.85107 0.85420 0.85095 0.82214 0.83297 0.85030 0.91622 0.91354 0.94654 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.65 12.64 55.49 0.70 -24.95 16 2 C -0.02 -0.48 4.60 -17.43 -0.08 -0.56 16 3 Si 1.05 24.41 29.99 -169.99 -5.10 19.31 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.35 -9.34 9.11 -15.06 -0.14 -9.48 16 8 H 0.05 1.46 7.96 -52.49 -0.42 1.05 16 9 N -0.59 -13.61 2.40 -172.35 -0.41 -14.02 16 10 C 0.16 3.24 5.59 -5.52 -0.03 3.21 16 11 C -0.17 -3.02 5.63 -29.42 -0.17 -3.18 16 12 C 0.13 2.12 5.69 -5.91 -0.03 2.09 16 13 N -0.59 -9.93 2.46 -176.66 -0.43 -10.37 16 14 C 0.53 9.43 7.66 -10.99 -0.08 9.34 16 15 O -0.54 -11.50 15.47 5.55 0.09 -11.41 16 16 C -0.11 -1.62 3.83 -29.04 -0.11 -1.73 16 17 C -0.05 -0.75 4.38 -104.61 -0.46 -1.21 16 18 C -0.09 -1.27 9.58 -39.89 -0.38 -1.65 16 19 C -0.11 -1.35 9.94 -39.90 -0.40 -1.74 16 20 C -0.10 -1.11 9.81 -39.52 -0.39 -1.50 16 21 C -0.11 -1.47 5.74 -106.86 -0.61 -2.09 16 22 C 0.14 1.71 11.05 -16.98 -0.19 1.52 16 23 N -0.49 -6.59 10.30 -13.15 -0.14 -6.73 16 24 C 0.07 0.87 11.07 -17.96 -0.20 0.67 16 25 C -0.15 -1.95 9.36 -39.40 -0.37 -2.32 16 26 C -0.01 -0.11 5.75 -106.82 -0.61 -0.72 16 27 C 0.09 1.35 5.05 -4.58 -0.02 1.33 16 28 C 0.14 2.80 5.07 -1.76 -0.01 2.79 16 29 H 0.27 7.52 6.37 -40.82 -0.26 7.26 16 30 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 31 H 0.03 0.55 7.58 -51.93 -0.39 0.16 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.50 7.90 -51.93 -0.41 1.09 16 34 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.08 1.32 7.12 -51.93 -0.37 0.95 16 36 H 0.10 1.22 6.02 -51.93 -0.31 0.91 16 37 H 0.11 1.80 7.21 -51.93 -0.37 1.43 16 38 H 0.13 1.97 8.05 -52.48 -0.42 1.55 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.13 1.57 6.65 -52.48 -0.35 1.22 16 44 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 45 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 46 H 0.04 0.75 7.11 -51.92 -0.37 0.38 16 47 H 0.07 1.55 6.21 -51.93 -0.32 1.23 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.84 372.22 -10.44 -43.29 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.48 Total: 4.49 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -4.28 Total: -5.23 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.28 Total: -56.06 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.10 Total: 19.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.84 -10.44 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981445912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.757 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds