Wall clock time and date at job start Sat Apr 11 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48506 * 109.47111 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47398 * 240.00171 * 3 2 1 6 6 H 1.48505 * 109.47114 * 119.99773 * 3 2 1 7 7 C 1.38808 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99972 * 206.36700 * 7 2 1 9 9 N 1.36937 * 120.00153 * 26.36890 * 7 2 1 10 10 C 1.43465 * 118.94229 * 206.91541 * 9 7 2 11 11 C 1.53243 * 108.26443 * 273.78266 * 10 9 7 12 12 C 1.47143 * 111.81020 * 281.67625 * 11 10 9 13 13 N 1.48218 * 110.34233 * 58.22569 * 12 11 10 14 14 C 1.34779 * 119.96794 * 102.46892 * 13 12 11 15 15 O 1.21284 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.36247 * 120.25842 * 264.71699 * 17 16 14 19 19 C 1.39334 * 121.01946 * 179.76629 * 18 17 16 20 20 C 1.36209 * 121.08221 * 0.51658 * 19 18 17 21 21 C 1.40334 * 119.51664 * 359.75056 * 20 19 18 22 22 C 1.40440 * 122.08381 * 179.97438 * 21 20 19 23 23 N 1.31239 * 119.88134 * 180.02562 * 22 21 20 24 24 C 1.32611 * 122.77753 * 359.97438 * 23 22 21 25 25 C 1.36167 * 121.88505 * 359.97438 * 24 23 22 26 26 C 1.40188 * 120.26167 * 84.99353 * 17 16 14 27 27 C 1.43621 * 120.06012 * 282.48465 * 13 12 11 28 28 C 1.48857 * 118.93941 * 27.18883 * 9 7 2 29 29 H 0.97000 * 119.99734 * 185.80483 * 1 2 3 30 30 H 1.09004 * 109.76038 * 33.24739 * 10 9 7 31 31 H 1.08996 * 109.76252 * 154.01099 * 10 9 7 32 32 H 1.09000 * 109.07530 * 161.04210 * 11 10 9 33 33 H 1.08997 * 108.90718 * 42.19517 * 11 10 9 34 34 H 1.08999 * 109.32448 * 297.96052 * 12 11 10 35 35 H 1.08999 * 109.18426 * 178.40342 * 12 11 10 36 36 H 1.09001 * 109.46519 * 299.99598 * 16 14 13 37 37 H 1.08998 * 109.47336 * 59.99462 * 16 14 13 38 38 H 1.08003 * 119.49595 * 0.02740 * 18 17 16 39 39 H 1.07999 * 119.45681 * 180.24598 * 19 18 17 40 40 H 1.07998 * 120.24134 * 179.77087 * 20 19 18 41 41 H 1.08002 * 120.05762 * 359.97438 * 22 21 20 42 42 H 1.08007 * 119.05316 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.66530 * 180.02562 * 25 24 23 44 44 H 1.09000 * 108.87115 * 329.88707 * 27 13 12 45 45 H 1.08995 * 108.87303 * 211.45276 * 27 13 12 46 46 H 1.09008 * 109.47688 * 260.60364 * 28 9 7 47 47 H 1.09000 * 109.47953 * 20.61503 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0060 -1.2506 0.4159 9 7 1.4324 -2.3266 -0.5257 10 6 1.8399 -3.6114 -0.0343 11 6 3.0754 -4.0576 -0.8236 12 6 2.7167 -4.5777 -2.1524 13 7 1.9873 -3.5475 -2.9293 14 6 2.6249 -2.8545 -3.8935 15 8 3.7949 -3.0743 -4.1255 16 6 1.8841 -1.8065 -4.6834 17 6 2.8167 -1.1836 -5.6900 18 6 3.4694 -0.0244 -5.3957 19 6 4.3389 0.5627 -6.3126 20 6 4.5554 0.0020 -7.5350 21 6 3.8964 -1.1892 -7.8757 22 6 4.0794 -1.8132 -9.1205 23 7 3.4406 -2.9265 -9.3940 24 6 2.6123 -3.5080 -8.5372 25 6 2.3676 -2.9836 -7.3046 26 6 3.0150 -1.7892 -6.9387 27 6 0.6018 -3.2869 -2.6553 28 6 0.4061 -2.1767 -1.5934 29 1 -0.4850 -0.8358 0.0850 30 1 2.0911 -3.5385 1.0239 31 1 1.0340 -4.3318 -0.1737 32 1 3.5925 -4.8377 -0.2647 33 1 3.7440 -3.2054 -0.9446 34 1 2.0838 -5.4575 -2.0367 35 1 3.6259 -4.8552 -2.6858 36 1 1.0447 -2.2690 -5.2027 37 1 1.5132 -1.0364 -4.0070 38 1 3.3138 0.4445 -4.4353 39 1 4.8462 1.4796 -6.0515 40 1 5.2294 0.4706 -8.2367 41 1 4.7439 -1.3771 -9.8517 42 1 2.1182 -4.4243 -8.8250 43 1 1.6894 -3.4740 -6.6220 44 1 0.1347 -4.2042 -2.2967 45 1 0.1110 -2.9816 -3.5793 46 1 -0.5886 -2.2632 -1.1561 47 1 0.5121 -1.1997 -2.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981445912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:38 Heat of formation + Delta-G solvation = 30.393258 kcal Electronic energy + Delta-G solvation = -30295.902754 eV Core-core repulsion = 26443.452933 eV Total energy + Delta-G solvation = -3852.449821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04974 -41.10696 -38.92858 -38.23430 -36.15553 -35.11706 -34.33115 -32.71967 -32.28399 -31.47935 -29.49869 -28.64171 -26.83999 -25.54662 -25.16735 -24.55953 -23.81774 -22.04470 -21.51521 -19.94846 -19.34088 -18.98579 -18.24502 -18.03577 -17.74467 -17.29497 -16.61175 -16.13268 -15.98249 -15.77477 -15.46462 -15.36503 -15.24092 -15.04183 -14.74561 -14.57413 -14.32932 -14.09232 -13.94889 -13.86330 -13.52942 -13.13635 -13.00285 -12.95328 -12.77684 -12.64249 -12.55762 -12.07290 -12.05288 -11.96422 -11.88473 -11.78973 -11.31733 -11.17303 -10.81991 -10.49576 -10.40295 -10.03513 -9.64458 -8.98043 -8.88326 -8.20630 -5.37344 -0.61608 -0.07679 0.91459 1.53795 1.56875 1.57903 1.77961 1.99709 2.20933 2.62183 3.08585 3.17674 3.39716 3.52624 3.55028 3.64635 3.70069 3.82659 3.92788 4.01550 4.04971 4.09818 4.14629 4.19742 4.28921 4.35572 4.39555 4.45980 4.47725 4.60055 4.66254 4.71845 4.79251 4.82936 4.84313 4.94704 4.99426 5.07426 5.09267 5.15027 5.18173 5.38957 5.41920 5.52293 5.66499 5.68412 5.87197 5.88497 6.40779 6.47901 6.98362 7.14337 7.17470 7.82609 8.19802 9.01455 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004111 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.218449 B = 6809.476531 C = 8146.935357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.058 4.058 3 Si 1.093 2.907 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.356 4.356 8 H 0.031 0.969 9 N -0.608 5.608 10 C 0.161 3.839 11 C -0.153 4.153 12 C 0.128 3.872 13 N -0.587 5.587 14 C 0.520 3.480 15 O -0.581 6.581 16 C -0.098 4.098 17 C -0.073 4.073 18 C -0.104 4.104 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.130 4.130 22 C 0.149 3.851 23 N -0.512 5.512 24 C 0.068 3.932 25 C -0.162 4.162 26 C -0.026 4.026 27 C 0.095 3.905 28 C 0.142 3.858 29 H 0.259 0.741 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.197 0.803 42 H 0.173 0.827 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.026 0.974 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -5.512 -15.673 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.257 4.257 3 Si 0.919 3.081 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.486 4.486 8 H 0.049 0.951 9 N -0.332 5.332 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.007 3.993 13 N -0.317 5.317 14 C 0.310 3.690 15 O -0.461 6.461 16 C -0.138 4.138 17 C -0.073 4.073 18 C -0.123 4.123 19 C -0.141 4.141 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.023 4.023 23 N -0.220 5.220 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.031 4.031 27 C -0.030 4.030 28 C 0.016 3.984 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.169 0.831 40 H 0.190 0.810 41 H 0.214 0.786 42 H 0.190 0.810 43 H 0.158 0.842 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.044 0.956 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.424 -4.554 -16.606 17.556 hybrid contribution 0.026 -0.971 1.924 2.156 sum 3.451 -5.526 -14.682 16.062 Atomic orbital electron populations 1.70915 1.07088 1.29597 1.49997 1.26661 0.96516 1.03631 0.98843 0.83140 0.74272 0.73714 0.76974 1.21186 1.21195 1.21006 1.19981 0.97607 0.90951 1.40043 0.95129 1.43858 1.47138 1.01932 1.40251 1.20297 0.94447 0.86747 0.95075 1.21558 1.00227 1.00071 0.97525 1.20649 0.97538 0.90021 0.91114 1.47490 1.11975 1.37907 1.34373 1.20696 0.86777 0.81365 0.80195 1.90633 1.17790 1.67956 1.69760 1.20696 0.98426 0.97845 0.96791 1.19173 0.99037 0.95539 0.93582 1.21129 0.95946 0.95460 0.99765 1.21180 0.97887 1.01231 0.93769 1.21358 0.98189 0.93329 0.97187 1.19321 0.99369 0.98210 0.96312 1.23724 0.95007 0.89908 0.93632 1.67471 1.08212 1.10917 1.35448 1.22479 0.95195 0.99933 0.89846 1.22002 1.01594 0.95894 0.98664 1.18182 0.96210 0.95143 0.93562 1.21931 0.81328 1.00090 0.99669 1.22022 0.90902 0.97095 0.88335 0.93056 0.95210 0.92192 0.89807 0.95876 0.88233 0.91185 0.85538 0.88366 0.86761 0.83099 0.81033 0.78584 0.80968 0.84202 0.88691 0.88278 0.95568 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 12.64 21.65 0.27 -53.44 16 2 C -0.06 -3.21 4.60 84.86 0.39 -2.82 16 3 Si 1.09 50.58 29.99 68.60 2.06 52.64 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.36 -19.46 9.11 84.03 0.77 -18.70 16 8 H 0.03 1.78 7.96 -2.91 -0.02 1.76 16 9 N -0.61 -28.29 2.40 -699.18 -1.67 -29.96 16 10 C 0.16 6.26 5.59 87.02 0.49 6.75 16 11 C -0.15 -5.36 5.63 28.85 0.16 -5.20 16 12 C 0.13 3.93 5.69 84.23 0.48 4.41 16 13 N -0.59 -19.20 2.46 -831.22 -2.04 -21.24 16 14 C 0.52 18.69 7.66 87.66 0.67 19.36 16 15 O -0.58 -24.92 15.47 -3.04 -0.05 -24.97 16 16 C -0.10 -3.00 3.83 29.10 0.11 -2.89 16 17 C -0.07 -2.27 4.38 -19.85 -0.09 -2.36 16 18 C -0.10 -3.17 9.58 22.07 0.21 -2.95 16 19 C -0.12 -2.94 9.94 22.06 0.22 -2.72 16 20 C -0.08 -1.68 9.81 22.31 0.22 -1.46 16 21 C -0.13 -3.23 5.74 -21.31 -0.12 -3.35 16 22 C 0.15 3.18 11.05 85.32 0.94 4.12 16 23 N -0.51 -12.59 10.30 -195.52 -2.01 -14.60 16 24 C 0.07 1.59 11.07 84.09 0.93 2.52 16 25 C -0.16 -4.16 9.36 22.39 0.21 -3.95 16 26 C -0.03 -0.75 5.75 -21.29 -0.12 -0.87 16 27 C 0.10 2.79 5.05 87.55 0.44 3.24 16 28 C 0.14 5.82 5.07 86.56 0.44 6.26 16 29 H 0.26 14.92 6.37 -92.71 -0.59 14.33 16 30 H 0.03 1.24 8.02 -2.38 -0.02 1.22 16 31 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.02 1.01 7.90 -2.39 -0.02 0.99 16 34 H 0.10 2.33 8.05 -2.39 -0.02 2.31 16 35 H 0.07 2.30 7.12 -2.39 -0.02 2.28 16 36 H 0.13 3.00 6.02 -2.39 -0.01 2.99 16 37 H 0.10 3.28 7.21 -2.39 -0.02 3.26 16 38 H 0.11 3.71 8.05 -2.91 -0.02 3.69 16 39 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 40 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.14 3.17 6.65 -2.91 -0.02 3.15 16 44 H 0.09 2.31 7.73 -2.39 -0.02 2.29 16 45 H 0.10 2.34 6.38 -2.39 -0.02 2.33 16 46 H 0.03 1.12 7.11 -2.38 -0.02 1.11 16 47 H 0.04 1.76 6.21 -2.39 -0.01 1.74 16 Total: -1.00 -74.61 372.22 4.07 -70.54 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.16 Total: 21.65 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.35 Total: -0.61 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -5.46 Total: -119.24 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.06 Total: 52.64 kcal Total: -74.61 4.07 -70.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981445912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.935 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds