Wall clock time and date at job start Sat Apr 11 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48501 * 109.46873 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.46771 * 29.99502 * 3 2 1 6 6 H 1.48488 * 109.47275 * 149.99951 * 3 2 1 7 7 C 1.38816 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00275 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46877 * 325.00104 * 10 9 7 12 12 C 1.52998 * 109.46963 * 84.99531 * 10 9 7 13 13 C 1.53005 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46957 * 300.00256 * 13 12 10 15 15 C 1.52997 * 109.47368 * 60.00493 * 14 13 12 16 16 H 1.09000 * 109.47226 * 59.99400 * 15 14 13 17 17 N 1.46496 * 109.47406 * 179.97438 * 15 14 13 18 18 C 1.34776 * 120.00143 * 274.99898 * 17 15 14 19 19 O 1.21603 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.47453 * 120.00360 * 180.02562 * 18 17 15 21 21 C 1.38861 * 120.45643 * 354.15037 * 20 18 17 22 22 C 1.38903 * 120.67054 * 180.02562 * 21 20 18 23 23 C 1.36370 * 121.27756 * 0.02562 * 22 21 20 24 24 C 1.40398 * 119.98438 * 359.97438 * 23 22 21 25 25 C 1.40464 * 121.95872 * 179.97438 * 24 23 22 26 26 N 1.31278 * 119.88215 * 180.02562 * 25 24 23 27 27 C 1.32554 * 122.73833 * 0.02562 * 26 25 24 28 28 C 1.36327 * 121.81456 * 0.24818 * 27 26 25 29 29 C 1.40295 * 118.70241 * 359.50900 * 28 27 26 30 30 C 1.52991 * 109.47352 * 205.00079 * 10 9 7 31 31 H 0.97003 * 119.99892 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99826 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46856 * 60.00560 * 12 10 9 34 34 H 1.08993 * 109.47296 * 300.00682 * 12 10 9 35 35 H 1.08998 * 109.46878 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47065 * 60.00506 * 13 12 10 37 37 H 1.09000 * 109.47437 * 300.00023 * 14 13 12 38 38 H 1.09001 * 109.47051 * 180.02562 * 14 13 12 39 39 H 0.97004 * 120.00544 * 94.99409 * 17 15 14 40 40 H 1.07995 * 119.66301 * 0.02649 * 21 20 18 41 41 H 1.07996 * 119.36173 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.01259 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.06043 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.08882 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.64983 * 179.72126 * 28 27 26 46 46 H 1.08998 * 109.47239 * 59.99989 * 30 10 9 47 47 H 1.09000 * 109.47149 * 299.99858 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9687 -3.5506 -0.5889 12 6 2.4219 -4.0356 1.4375 13 6 3.1874 -5.3604 1.4375 14 6 2.3107 -6.4559 0.8277 15 6 1.9468 -6.0772 -0.6093 16 1 2.8575 -5.9705 -1.1987 17 7 1.1078 -7.1265 -1.1934 18 6 1.6783 -8.2081 -1.7601 19 8 2.8895 -8.3128 -1.7868 20 6 0.8339 -9.2640 -2.3485 21 6 -0.5477 -9.2146 -2.2182 22 6 -1.3474 -10.2072 -2.7703 23 6 -0.8047 -11.2555 -3.4531 24 6 0.5877 -11.3457 -3.6092 25 6 1.1906 -12.4073 -4.3039 26 7 2.4971 -12.4514 -4.4249 27 6 3.2961 -11.5255 -3.9137 28 6 2.8079 -10.4595 -3.2180 29 6 1.4198 -10.3417 -3.0521 30 6 1.1808 -4.7521 -0.6091 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.5112 -4.1419 2.0270 34 1 3.0468 -3.2553 1.8718 35 1 3.4463 -5.6304 2.4612 36 1 4.0981 -5.2537 0.8481 37 1 1.3999 -6.5626 1.4170 38 1 2.8558 -7.3998 0.8280 39 1 0.1416 -7.0429 -1.1724 40 1 -1.0051 -8.3962 -1.6823 41 1 -2.4197 -10.1475 -2.6566 42 1 -1.4458 -12.0157 -3.8743 43 1 0.5806 -13.1858 -4.7376 44 1 4.3635 -11.6205 -4.0483 45 1 3.4765 -9.7183 -2.8057 46 1 0.9216 -4.4823 -1.6328 47 1 0.2701 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981522236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:01 Heat of formation + Delta-G solvation = 21.771206 kcal Electronic energy + Delta-G solvation = -28372.687301 eV Core-core repulsion = 24519.863600 eV Total energy + Delta-G solvation = -3852.823701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37636 -39.86490 -38.10179 -37.42217 -34.85866 -33.51268 -33.15153 -31.57631 -31.16227 -30.39971 -29.03984 -27.78691 -25.00773 -24.02024 -23.73954 -23.56388 -22.01103 -21.36552 -20.55180 -19.53838 -18.36140 -18.15191 -17.10995 -16.85036 -16.47113 -16.11564 -15.48222 -15.24729 -15.02405 -14.49747 -14.44335 -14.32504 -14.06338 -13.82388 -13.59480 -13.54529 -13.16385 -12.94527 -12.73177 -12.43337 -12.38899 -12.18691 -12.09997 -11.95035 -11.02535 -10.99411 -10.90857 -10.76871 -10.48543 -10.39159 -10.33321 -10.22588 -10.15570 -9.85160 -9.67910 -9.50834 -9.45397 -9.11414 -8.90078 -8.41888 -6.99400 -5.79762 -3.08420 -0.23415 0.52580 1.36496 2.38465 2.93053 3.04179 3.41867 3.47480 3.48668 3.79785 4.13627 4.18893 4.24515 4.35548 4.53280 4.55155 4.58885 4.72098 4.91027 5.01414 5.05068 5.19620 5.26173 5.33526 5.46009 5.51712 5.55354 5.59385 5.61957 5.65533 5.72835 5.82426 5.82706 5.92700 5.97228 6.02021 6.09730 6.21051 6.26803 6.31480 6.42938 6.48190 6.50257 6.57814 6.68615 6.92897 7.08606 7.34971 7.68332 7.68550 8.04697 8.38957 9.50242 10.07043 10.41745 11.42944 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.002146 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.313118 B =13044.757508 C =13456.390113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.090 0.910 17 N -0.714 5.714 18 C 0.561 3.439 19 O -0.533 6.533 20 C -0.127 4.127 21 C -0.056 4.056 22 C -0.130 4.130 23 C -0.060 4.060 24 C -0.121 4.121 25 C 0.139 3.861 26 N -0.488 5.488 27 C 0.072 3.928 28 C -0.153 4.153 29 C 0.011 3.989 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.398 0.602 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -25.444 -4.945 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.108 0.892 17 N -0.364 5.364 18 C 0.348 3.652 19 O -0.412 6.412 20 C -0.130 4.130 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.080 4.080 24 C -0.123 4.123 25 C -0.033 4.033 26 N -0.195 5.195 27 C -0.071 4.071 28 C -0.171 4.171 29 C 0.005 3.995 30 C -0.169 4.169 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.234 0.766 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.181 0.819 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.088 0.912 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.157 -25.947 -5.387 26.525 hybrid contribution -0.910 1.711 0.553 2.015 sum -2.066 -24.236 -4.834 24.799 Atomic orbital electron populations 1.69657 1.05104 1.25647 1.57822 1.24739 0.95523 0.97695 1.03050 0.86200 0.78684 0.83862 0.77531 1.21729 1.21803 1.20740 1.19242 0.91023 0.84039 1.42526 0.91136 1.42399 1.05733 0.99701 1.88625 1.20089 0.94094 0.85499 0.92990 0.93322 1.22296 0.99734 0.95259 1.00459 1.21485 0.98517 0.95317 0.99993 1.21883 1.00189 0.98926 0.95243 1.21112 0.94493 0.85866 0.94085 0.89153 1.46111 1.10621 1.20939 1.58754 1.18009 0.87595 0.81681 0.77877 1.90596 1.14149 1.77827 1.58587 1.19918 0.93752 0.96590 1.02697 1.21550 0.92320 0.97959 0.95797 1.20859 1.00649 0.94499 0.98829 1.21196 0.93232 0.97691 0.95859 1.19035 0.94593 0.97119 1.01571 1.23181 0.90985 0.95266 0.93820 1.67405 1.05585 1.27673 1.18867 1.22375 1.00006 0.90269 0.94433 1.22978 0.95541 1.00336 0.98284 1.17936 0.93895 0.92747 0.94893 1.22110 0.99371 0.93290 1.02094 0.93540 0.78345 0.92650 0.91838 0.92453 0.92117 0.92034 0.92111 0.76632 0.84847 0.84679 0.84461 0.81934 0.82798 0.80628 0.91247 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.47 5.12 -53.43 -0.27 -17.75 16 10 C 0.18 3.46 2.77 -67.94 -0.19 3.27 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.49 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.12 -1.60 5.49 -26.74 -0.15 -1.74 16 15 C 0.15 1.97 2.46 -67.91 -0.17 1.80 16 16 H 0.09 1.36 7.57 -51.93 -0.39 0.96 16 17 N -0.71 -8.00 5.03 -54.85 -0.28 -8.27 16 18 C 0.56 7.05 7.70 -12.51 -0.10 6.95 16 19 O -0.53 -8.13 13.15 5.27 0.07 -8.06 16 20 C -0.13 -1.36 5.90 -104.70 -0.62 -1.97 16 21 C -0.06 -0.43 9.51 -39.10 -0.37 -0.81 16 22 C -0.13 -0.81 9.92 -40.01 -0.40 -1.21 16 23 C -0.06 -0.38 9.79 -39.44 -0.39 -0.77 16 24 C -0.12 -1.11 5.74 -106.88 -0.61 -1.73 16 25 C 0.14 1.22 11.05 -16.95 -0.19 1.04 16 26 N -0.49 -5.34 10.30 -13.11 -0.14 -5.48 16 27 C 0.07 0.78 11.07 -17.93 -0.20 0.58 16 28 C -0.15 -1.82 9.28 -39.50 -0.37 -2.18 16 29 C 0.01 0.13 5.77 -106.55 -0.61 -0.49 16 30 C -0.13 -1.96 4.86 -26.71 -0.13 -2.09 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.44 6.68 -40.82 -0.27 3.17 16 40 H 0.13 0.72 6.43 -52.49 -0.34 0.38 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.18 2.29 5.06 -52.48 -0.27 2.03 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -32.94 380.81 -10.83 -43.77 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.63 Total: 10.53 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -5.03 Total: -10.66 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.04 Total: -58.48 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.94 -10.83 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981522236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.541 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds