Wall clock time and date at job start Sat Apr 11 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48501 * 109.46873 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.46771 * 29.99502 * 3 2 1 6 6 H 1.48488 * 109.47275 * 149.99951 * 3 2 1 7 7 C 1.38816 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00275 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46877 * 325.00104 * 10 9 7 12 12 C 1.52998 * 109.46963 * 84.99531 * 10 9 7 13 13 C 1.53005 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46957 * 300.00256 * 13 12 10 15 15 C 1.52997 * 109.47368 * 60.00493 * 14 13 12 16 16 H 1.09000 * 109.47226 * 59.99400 * 15 14 13 17 17 N 1.46496 * 109.47406 * 179.97438 * 15 14 13 18 18 C 1.34776 * 120.00143 * 274.99898 * 17 15 14 19 19 O 1.21603 * 119.99763 * 359.97438 * 18 17 15 20 20 C 1.47453 * 120.00360 * 180.02562 * 18 17 15 21 21 C 1.38861 * 120.45643 * 354.15037 * 20 18 17 22 22 C 1.38903 * 120.67054 * 180.02562 * 21 20 18 23 23 C 1.36370 * 121.27756 * 0.02562 * 22 21 20 24 24 C 1.40398 * 119.98438 * 359.97438 * 23 22 21 25 25 C 1.40464 * 121.95872 * 179.97438 * 24 23 22 26 26 N 1.31278 * 119.88215 * 180.02562 * 25 24 23 27 27 C 1.32554 * 122.73833 * 0.02562 * 26 25 24 28 28 C 1.36327 * 121.81456 * 0.24818 * 27 26 25 29 29 C 1.40295 * 118.70241 * 359.50900 * 28 27 26 30 30 C 1.52991 * 109.47352 * 205.00079 * 10 9 7 31 31 H 0.97003 * 119.99892 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99826 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46856 * 60.00560 * 12 10 9 34 34 H 1.08993 * 109.47296 * 300.00682 * 12 10 9 35 35 H 1.08998 * 109.46878 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47065 * 60.00506 * 13 12 10 37 37 H 1.09000 * 109.47437 * 300.00023 * 14 13 12 38 38 H 1.09001 * 109.47051 * 180.02562 * 14 13 12 39 39 H 0.97004 * 120.00544 * 94.99409 * 17 15 14 40 40 H 1.07995 * 119.66301 * 0.02649 * 21 20 18 41 41 H 1.07996 * 119.36173 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.01259 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.06043 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.08882 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.64983 * 179.72126 * 28 27 26 46 46 H 1.08998 * 109.47239 * 59.99989 * 30 10 9 47 47 H 1.09000 * 109.47149 * 299.99858 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9687 -3.5506 -0.5889 12 6 2.4219 -4.0356 1.4375 13 6 3.1874 -5.3604 1.4375 14 6 2.3107 -6.4559 0.8277 15 6 1.9468 -6.0772 -0.6093 16 1 2.8575 -5.9705 -1.1987 17 7 1.1078 -7.1265 -1.1934 18 6 1.6783 -8.2081 -1.7601 19 8 2.8895 -8.3128 -1.7868 20 6 0.8339 -9.2640 -2.3485 21 6 -0.5477 -9.2146 -2.2182 22 6 -1.3474 -10.2072 -2.7703 23 6 -0.8047 -11.2555 -3.4531 24 6 0.5877 -11.3457 -3.6092 25 6 1.1906 -12.4073 -4.3039 26 7 2.4971 -12.4514 -4.4249 27 6 3.2961 -11.5255 -3.9137 28 6 2.8079 -10.4595 -3.2180 29 6 1.4198 -10.3417 -3.0521 30 6 1.1808 -4.7521 -0.6091 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.5112 -4.1419 2.0270 34 1 3.0468 -3.2553 1.8718 35 1 3.4463 -5.6304 2.4612 36 1 4.0981 -5.2537 0.8481 37 1 1.3999 -6.5626 1.4170 38 1 2.8558 -7.3998 0.8280 39 1 0.1416 -7.0429 -1.1724 40 1 -1.0051 -8.3962 -1.6823 41 1 -2.4197 -10.1475 -2.6566 42 1 -1.4458 -12.0157 -3.8743 43 1 0.5806 -13.1858 -4.7376 44 1 4.3635 -11.6205 -4.0483 45 1 3.4765 -9.7183 -2.8057 46 1 0.9216 -4.4823 -1.6328 47 1 0.2701 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981522236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:00 Heat of formation + Delta-G solvation = 1.181673 kcal Electronic energy + Delta-G solvation = -28373.580130 eV Core-core repulsion = 24519.863600 eV Total energy + Delta-G solvation = -3853.716530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11318 -40.83752 -39.30690 -38.12845 -36.31581 -34.95099 -33.88758 -32.96593 -32.27323 -31.23955 -30.20234 -29.28889 -25.81495 -25.59915 -24.71400 -24.34848 -23.22859 -22.53321 -21.59416 -20.85480 -19.34536 -19.00062 -18.72509 -17.67636 -17.22862 -17.19538 -16.54312 -16.23950 -16.12169 -15.88326 -15.48229 -15.25323 -15.21512 -15.02707 -14.91722 -14.70343 -14.36094 -14.13583 -13.62223 -13.54857 -13.40907 -13.04348 -12.94328 -12.89906 -12.83675 -12.68173 -12.27415 -12.15627 -12.05706 -11.97944 -11.66976 -11.46669 -11.38548 -11.17694 -10.93268 -10.87331 -10.32134 -10.19964 -10.09659 -9.11037 -9.00157 -7.94471 -5.21971 -0.88739 -0.13459 0.61978 1.47116 1.47815 1.56146 1.70196 1.99824 2.23751 2.56151 3.09170 3.38800 3.48342 3.50520 3.59835 3.66024 3.77855 3.84836 3.90972 3.93901 4.01854 4.19502 4.23685 4.29818 4.39790 4.40737 4.50864 4.56074 4.58729 4.66432 4.72619 4.75402 4.82866 4.92907 5.02120 5.07423 5.12303 5.15704 5.20762 5.26580 5.34035 5.36658 5.44356 5.49739 5.52905 5.64741 5.68082 5.78397 6.28521 6.46700 6.96233 7.14810 7.34965 8.10492 8.34366 9.28805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.002146 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.313118 B =13044.757508 C =13456.390113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.035 0.965 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.159 3.841 16 H 0.069 0.931 17 N -0.705 5.705 18 C 0.558 3.442 19 O -0.569 6.569 20 C -0.163 4.163 21 C -0.039 4.039 22 C -0.133 4.133 23 C -0.042 4.042 24 C -0.137 4.137 25 C 0.149 3.851 26 N -0.516 5.516 27 C 0.067 3.933 28 C -0.182 4.182 29 C -0.008 4.008 30 C -0.114 4.114 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.413 0.587 40 H 0.157 0.843 41 H 0.173 0.827 42 H 0.179 0.821 43 H 0.203 0.797 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.061 0.939 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -27.526 -5.070 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.087 0.913 17 N -0.356 5.356 18 C 0.347 3.653 19 O -0.451 6.451 20 C -0.166 4.166 21 C -0.059 4.059 22 C -0.151 4.151 23 C -0.062 4.062 24 C -0.139 4.139 25 C -0.022 4.022 26 N -0.224 5.224 27 C -0.075 4.075 28 C -0.201 4.201 29 C -0.014 4.014 30 C -0.153 4.153 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.251 0.749 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.197 0.803 43 H 0.220 0.780 44 H 0.180 0.820 45 H 0.172 0.828 46 H 0.080 0.920 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.345 -28.064 -5.508 28.794 hybrid contribution -0.296 2.244 0.551 2.329 sum -3.641 -25.820 -4.957 26.542 Atomic orbital electron populations 1.69794 1.06378 1.25930 1.59728 1.25482 0.96379 1.00798 1.04040 0.85224 0.77761 0.79971 0.77349 1.21597 1.22162 1.19690 1.19566 0.91275 0.85318 1.40668 0.91080 1.42563 1.05464 1.00747 1.88705 1.20297 0.93825 0.84769 0.94278 0.94723 1.22096 0.99695 0.96328 0.98535 1.21411 0.98067 0.93764 1.01262 1.21805 1.00560 0.98265 0.94767 1.20795 0.93728 0.85637 0.94396 0.91258 1.45885 1.11129 1.20087 1.58452 1.18400 0.87443 0.82067 0.77342 1.90590 1.15867 1.78660 1.59959 1.19782 0.94866 0.96682 1.05238 1.21947 0.91055 0.98646 0.94211 1.21320 1.02318 0.93555 0.97862 1.21702 0.92085 0.98252 0.94113 1.19322 0.95963 0.96743 1.01919 1.23891 0.90611 0.95547 0.92177 1.67472 1.06796 1.27968 1.20156 1.22521 1.00737 0.90104 0.94120 1.22828 0.96265 1.00813 1.00209 1.18198 0.93924 0.93810 0.95429 1.21884 0.99206 0.92810 1.01424 0.94068 0.79361 0.92610 0.94061 0.90594 0.92451 0.90546 0.92142 0.74941 0.82560 0.80958 0.80328 0.78026 0.81958 0.82781 0.92036 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.24 -12.99 9.93 84.03 0.83 -12.16 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -36.00 5.12 -322.95 -1.65 -37.65 16 10 C 0.18 6.74 2.77 44.99 0.12 6.86 16 11 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 12 C -0.13 -4.29 5.50 30.60 0.17 -4.12 16 13 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 14 C -0.12 -2.84 5.49 30.59 0.17 -2.67 16 15 C 0.16 4.18 2.46 45.01 0.11 4.29 16 16 H 0.07 2.15 7.57 -2.39 -0.02 2.13 16 17 N -0.70 -15.23 5.03 -445.70 -2.24 -17.48 16 18 C 0.56 14.23 7.70 86.67 0.67 14.90 16 19 O -0.57 -18.48 13.15 -4.04 -0.05 -18.53 16 20 C -0.16 -3.38 5.90 -19.92 -0.12 -3.50 16 21 C -0.04 -0.48 9.51 22.58 0.21 -0.27 16 22 C -0.13 -1.03 9.92 21.99 0.22 -0.81 16 23 C -0.04 -0.35 9.79 22.36 0.22 -0.13 16 24 C -0.14 -2.23 5.74 -21.33 -0.12 -2.36 16 25 C 0.15 2.30 11.05 85.32 0.94 3.24 16 26 N -0.52 -11.08 10.30 -195.40 -2.01 -13.09 16 27 C 0.07 1.54 11.07 84.14 0.93 2.47 16 28 C -0.18 -4.67 9.28 22.32 0.21 -4.46 16 29 C -0.01 -0.18 5.77 -21.11 -0.12 -0.30 16 30 C -0.11 -3.40 4.86 30.61 0.15 -3.26 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.37 19.41 7.80 -92.70 -0.72 18.69 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 6.32 6.68 -92.71 -0.62 5.70 16 40 H 0.16 1.11 6.43 -2.91 -0.02 1.09 16 41 H 0.17 0.13 8.06 -2.91 -0.02 0.10 16 42 H 0.18 0.01 8.06 -2.91 -0.02 -0.02 16 43 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.16 4.55 5.06 -2.91 -0.01 4.54 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.90 380.81 1.26 -73.64 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.33 Total: 31.72 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.24 Total: -8.74 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -5.62 Total: -126.19 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.90 1.26 -73.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981522236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.825 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds