Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48492 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00292 * 3 2 1 6 6 H 1.48501 * 109.46760 * 60.00283 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 17 17 N 1.46500 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99914 * 274.99487 * 17 15 14 19 19 O 1.21600 * 120.00215 * 0.02562 * 18 17 15 20 20 C 1.47450 * 119.99939 * 179.97438 * 18 17 15 21 21 C 1.38946 * 121.17158 * 0.02562 * 20 18 17 22 22 N 1.32191 * 121.31802 * 180.02562 * 21 20 18 23 23 C 1.31200 * 123.70056 * 359.97438 * 22 21 20 24 24 C 1.40389 * 120.90844 * 359.97438 * 23 22 21 25 25 C 1.40397 * 122.14120 * 180.02562 * 24 23 22 26 26 C 1.36241 * 119.48462 * 179.19584 * 25 24 23 27 27 C 1.39291 * 121.10136 * 0.76871 * 26 25 24 28 28 C 1.36445 * 120.95025 * 359.47619 * 27 26 25 29 29 C 1.39694 * 119.43176 * 0.02562 * 28 27 26 30 30 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 31 31 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 35 35 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 37 37 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00272 * 95.00347 * 17 15 14 40 40 H 1.08001 * 119.34324 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.54613 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.25367 * 359.94224 * 25 24 23 43 43 H 1.07990 * 119.45001 * 180.22537 * 26 25 24 44 44 H 1.08000 * 119.52611 * 179.50423 * 27 26 25 45 45 H 1.07994 * 120.28376 * 180.02562 * 28 27 26 46 46 H 1.09002 * 109.47075 * 299.99543 * 30 10 9 47 47 H 1.08996 * 109.47407 * 60.00500 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 2.8576 -5.9704 -1.1998 17 7 1.1070 -7.1259 -1.1942 18 6 1.6766 -8.2080 -1.7608 19 8 2.8877 -8.3140 -1.7871 20 6 0.8313 -9.2639 -2.3478 21 6 -0.5548 -9.1680 -2.3308 22 7 -1.3154 -10.1131 -2.8558 23 6 -0.8419 -11.1963 -3.4248 24 6 0.5414 -11.4196 -3.5113 25 6 1.0761 -12.5689 -4.1149 26 6 2.4281 -12.7228 -4.1839 27 6 3.2892 -11.7662 -3.6514 28 6 2.8035 -10.6400 -3.0535 29 6 1.4224 -10.4458 -2.9748 30 6 1.1808 -4.7521 -0.6103 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0467 -3.2553 1.8709 34 1 1.5111 -4.1418 2.0259 35 1 3.4462 -5.6305 2.4602 36 1 4.0981 -5.2536 0.8472 37 1 1.4000 -6.5626 1.4159 38 1 2.8559 -7.3998 0.8270 39 1 0.1409 -7.0416 -1.1730 40 1 -1.0200 -8.3040 -1.8796 41 1 -1.5257 -11.9259 -3.8329 42 1 0.4210 -13.3194 -4.5320 43 1 2.8388 -13.6053 -4.6515 44 1 4.3567 -11.9178 -3.7131 45 1 3.4810 -9.9051 -2.6446 46 1 0.2701 -4.8584 -0.0208 47 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981540096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = -0.360803 kcal Electronic energy + Delta-G solvation = -28326.833265 eV Core-core repulsion = 24473.049848 eV Total energy + Delta-G solvation = -3853.783417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.97579 -40.75055 -39.21495 -38.35392 -36.28905 -34.95101 -33.79240 -32.93770 -32.17388 -31.34082 -30.15794 -29.28959 -26.09237 -25.67704 -24.51911 -24.00945 -23.19547 -22.59370 -21.66994 -20.88128 -19.32240 -18.97893 -18.47976 -18.42535 -17.40630 -16.75651 -16.52780 -16.25184 -16.08057 -15.82598 -15.48889 -15.28387 -15.20197 -14.99751 -14.84066 -14.70197 -14.39746 -14.13063 -13.73294 -13.56435 -13.41116 -13.17631 -12.92465 -12.91160 -12.85325 -12.44942 -12.26539 -12.13766 -12.03774 -11.98761 -11.67871 -11.46620 -11.39585 -11.11432 -11.00939 -10.88985 -10.39961 -10.17798 -10.08476 -9.14286 -9.00486 -7.94535 -5.22301 -0.98215 -0.13579 0.65773 1.46762 1.47037 1.56967 1.72745 1.96477 2.18697 2.55929 3.05346 3.21538 3.38897 3.49333 3.60161 3.62775 3.69863 3.84143 3.87215 3.97344 4.02871 4.22558 4.28318 4.29248 4.31807 4.40817 4.48649 4.51112 4.56061 4.61838 4.66661 4.74830 4.76757 4.98045 5.03208 5.06694 5.14831 5.16392 5.20711 5.33837 5.39906 5.41064 5.49399 5.50985 5.52623 5.57890 5.64775 5.90226 6.28335 6.42136 6.81554 7.10101 7.34611 8.10208 8.33875 9.29020 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.002138 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.502974 B =13095.299693 C =13597.340960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.037 0.963 12 C -0.127 4.127 13 C -0.105 4.105 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.072 0.928 17 N -0.706 5.706 18 C 0.567 3.433 19 O -0.566 6.566 20 C -0.203 4.203 21 C 0.129 3.871 22 N -0.522 5.522 23 C 0.190 3.810 24 C -0.139 4.139 25 C -0.075 4.075 26 C -0.125 4.125 27 C -0.089 4.089 28 C -0.149 4.149 29 C -0.009 4.009 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.411 0.589 40 H 0.174 0.826 41 H 0.208 0.792 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.076 0.924 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -31.176 -7.111 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.357 5.357 18 C 0.355 3.645 19 O -0.446 6.446 20 C -0.208 4.208 21 C -0.015 4.015 22 N -0.229 5.229 23 C 0.020 3.980 24 C -0.141 4.141 25 C -0.094 4.094 26 C -0.142 4.142 27 C -0.108 4.108 28 C -0.166 4.166 29 C -0.014 4.014 30 C -0.155 4.155 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.191 0.809 41 H 0.224 0.776 42 H 0.193 0.807 43 H 0.179 0.821 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.095 0.905 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.861 -30.831 -7.015 31.631 hybrid contribution 0.576 1.616 0.187 1.726 sum 1.436 -29.215 -6.828 30.037 Atomic orbital electron populations 1.69806 1.06441 1.25858 1.59828 1.25504 0.96387 1.00881 1.04089 0.85139 0.78245 0.80193 0.76620 1.19240 1.22152 1.22083 1.19613 0.91313 0.85261 1.40481 0.90943 1.42585 1.05468 1.00804 1.88683 1.20301 0.93821 0.84690 0.94312 0.94520 1.22098 0.99682 0.96412 0.98494 1.21408 0.98058 0.93643 1.01298 1.21813 1.00540 0.98392 0.94710 1.20817 0.93695 0.85484 0.94456 0.90947 1.45915 1.11085 1.20205 1.58506 1.18085 0.87286 0.81740 0.77357 1.90624 1.15490 1.78561 1.59975 1.21836 0.95241 0.96968 1.06734 1.23044 0.88521 0.96994 0.92936 1.67233 1.40998 1.03141 1.11563 1.24025 0.92372 0.93044 0.88607 1.19319 0.95051 0.96926 1.02814 1.21468 0.96431 0.95438 0.96060 1.21401 0.93555 1.00034 0.99242 1.21520 1.01870 0.92784 0.94633 1.21695 0.94601 0.99792 1.00555 1.19184 0.94599 0.92442 0.95174 1.21901 0.99213 0.92923 1.01429 0.94092 0.79426 0.93913 0.92756 0.90538 0.92250 0.90771 0.92013 0.75168 0.80865 0.77583 0.80655 0.82084 0.83721 0.84290 0.90496 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.23 -13.03 9.93 84.03 0.83 -12.20 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -36.64 5.12 -322.94 -1.65 -38.30 16 10 C 0.18 6.89 2.77 44.99 0.12 7.01 16 11 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 12 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16 13 C -0.11 -2.88 5.92 30.60 0.18 -2.70 16 14 C -0.12 -2.96 5.49 30.59 0.17 -2.79 16 15 C 0.16 4.38 2.46 45.01 0.11 4.49 16 16 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 17 N -0.71 -16.67 5.03 -445.70 -2.24 -18.91 16 18 C 0.57 15.34 7.74 86.67 0.67 16.01 16 19 O -0.57 -18.61 13.40 -4.03 -0.05 -18.67 16 20 C -0.20 -4.80 6.07 -18.59 -0.11 -4.91 16 21 C 0.13 2.56 10.71 84.81 0.91 3.47 16 22 N -0.52 -9.86 10.22 -193.73 -1.98 -11.84 16 23 C 0.19 2.63 11.00 85.31 0.94 3.57 16 24 C -0.14 -2.24 5.74 -21.33 -0.12 -2.37 16 25 C -0.07 -0.72 9.82 22.33 0.22 -0.50 16 26 C -0.12 -1.28 9.94 22.06 0.22 -1.06 16 27 C -0.09 -1.39 9.96 22.10 0.22 -1.17 16 28 C -0.15 -3.41 9.33 22.20 0.21 -3.20 16 29 C -0.01 -0.20 5.91 -19.94 -0.12 -0.32 16 30 C -0.12 -3.60 4.86 30.61 0.15 -3.45 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.37 19.80 7.80 -92.71 -0.72 19.08 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.41 7.52 6.70 -92.71 -0.62 6.90 16 40 H 0.17 2.61 6.44 -2.91 -0.02 2.59 16 41 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.16 0.56 8.06 -2.92 -0.02 0.54 16 44 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.14 3.87 5.24 -2.91 -0.02 3.85 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.93 381.69 1.27 -72.66 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.34 Total: 33.59 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.23 Total: -8.25 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.59 Total: -127.87 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.93 1.27 -72.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981540096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.297 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds