Wall clock time and date at job start Sat Apr 11 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99964 * 2 1 4 4 H 1.48497 * 109.46785 * 91.95895 * 3 2 1 5 5 H 1.48491 * 109.46974 * 331.95820 * 3 2 1 6 6 H 1.48502 * 109.46906 * 211.95539 * 3 2 1 7 7 C 1.38811 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 18.68475 * 7 2 1 9 9 N 1.36931 * 120.00661 * 198.69022 * 7 2 1 10 10 C 1.43460 * 118.94726 * 209.27497 * 9 7 2 11 11 C 1.53800 * 107.95623 * 273.60999 * 10 9 7 12 12 C 1.47140 * 111.83749 * 281.65997 * 11 10 9 13 13 N 1.48213 * 110.34424 * 58.29944 * 12 11 10 14 14 C 1.34775 * 119.96790 * 102.51122 * 13 12 11 15 15 O 1.21285 * 119.99979 * 354.83226 * 14 13 12 16 16 C 1.50700 * 119.99747 * 174.83789 * 14 13 12 17 17 C 1.50706 * 109.46986 * 174.21394 * 16 14 13 18 18 C 1.39377 * 119.49072 * 89.99998 * 17 16 14 19 19 C 1.36168 * 121.09117 * 179.97438 * 18 17 16 20 20 C 1.40375 * 119.51089 * 0.02584 * 19 18 17 21 21 C 1.40432 * 122.07898 * 180.02562 * 20 19 18 22 22 N 1.31248 * 119.88209 * 179.97438 * 21 20 19 23 23 C 1.32608 * 122.77400 * 359.97438 * 22 21 20 24 24 C 1.36172 * 121.88013 * 0.02784 * 23 22 21 25 25 C 1.40694 * 118.66733 * 359.95009 * 24 23 22 26 26 C 1.36212 * 119.49156 * 269.72544 * 17 16 14 27 27 C 1.43622 * 120.06045 * 282.49248 * 13 12 11 28 28 C 1.48862 * 118.93653 * 28.99938 * 9 7 2 29 29 H 0.96994 * 119.99638 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76300 * 33.21754 * 10 9 7 31 31 H 1.08992 * 109.76917 * 153.93822 * 10 9 7 32 32 H 1.08993 * 109.00983 * 42.26990 * 11 10 9 33 33 H 1.09004 * 109.00651 * 161.13570 * 11 10 9 34 34 H 1.08997 * 109.32320 * 178.56746 * 12 11 10 35 35 H 1.09001 * 109.32509 * 298.03047 * 12 11 10 36 36 H 1.08993 * 109.47322 * 294.21145 * 16 14 13 37 37 H 1.09001 * 109.47413 * 54.21678 * 16 14 13 38 38 H 1.08006 * 119.45496 * 359.97354 * 18 17 16 39 39 H 1.07991 * 120.24518 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.06148 * 359.95495 * 21 20 19 41 41 H 1.08007 * 119.05962 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.67167 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.26057 * 0.02562 * 26 17 16 44 44 H 1.09000 * 108.87000 * 211.44462 * 27 13 12 45 45 H 1.09002 * 108.87141 * 329.88130 * 27 13 12 46 46 H 1.08996 * 109.48277 * 260.63248 * 28 9 7 47 47 H 1.09006 * 109.48030 * 20.66452 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5391 2.0225 1.3993 5 1 1.4276 2.6642 -0.6582 6 1 3.5265 1.4525 -0.7410 7 6 2.0103 -1.2021 -0.0005 8 1 1.5130 -2.1127 -0.3006 9 7 3.3255 -1.2336 0.3794 10 6 4.1877 -2.2315 -0.1853 11 6 4.0650 -3.5035 0.6704 12 6 4.8418 -3.4023 1.9160 13 7 4.3906 -2.2359 2.7113 14 6 3.5916 -2.4190 3.7811 15 8 3.1660 -3.5253 4.0379 16 6 3.2271 -1.2490 4.6583 17 6 2.2203 -1.6891 5.6898 18 6 2.6644 -2.1767 6.9177 19 6 1.7834 -2.5826 7.8733 20 6 0.4049 -2.5098 7.6186 21 6 -0.5508 -2.9132 8.5653 22 7 -1.8293 -2.8261 8.2818 23 6 -2.2776 -2.3660 7.1217 24 6 -1.4327 -1.9500 6.1381 25 6 -0.0461 -2.0127 6.3682 26 6 0.8903 -1.5989 5.4100 27 6 4.8043 -0.9107 2.3432 28 6 3.8160 -0.2274 1.3606 29 1 -0.4849 0.8400 0.0004 30 1 3.8823 -2.4455 -1.2095 31 1 5.2183 -1.8771 -0.1745 32 1 3.0159 -3.6647 0.9184 33 1 4.4284 -4.3550 0.0950 34 1 4.7058 -4.3120 2.5008 35 1 5.8983 -3.2869 1.6738 36 1 4.1212 -0.8776 5.1587 37 1 2.7972 -0.4561 4.0463 38 1 3.7249 -2.2335 7.1144 39 1 2.1426 -2.9586 8.8198 40 1 -0.2342 -3.2948 9.5248 41 1 -3.3432 -2.3206 6.9518 42 1 -1.8192 -1.5791 5.2003 43 1 0.5597 -1.2154 4.4561 44 1 4.8829 -0.3028 3.2445 45 1 5.7851 -0.9660 1.8709 46 1 4.3238 0.5789 0.8314 47 1 2.9717 0.1786 1.9179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981609005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:19 Heat of formation + Delta-G solvation = 53.904578 kcal Electronic energy + Delta-G solvation = -29919.667961 eV Core-core repulsion = 26068.237668 eV Total energy + Delta-G solvation = -3851.430293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82815 -39.91006 -37.77168 -36.90710 -34.40539 -33.35105 -32.91030 -32.19022 -31.44605 -29.74242 -28.34297 -27.58898 -25.91686 -23.97028 -23.49683 -23.21805 -22.29482 -21.73259 -20.00970 -18.77062 -17.75135 -17.26813 -17.07222 -16.57632 -16.32455 -16.00473 -15.40602 -14.91558 -14.80122 -14.48492 -14.23197 -14.06988 -13.97424 -13.75752 -13.44934 -13.30517 -13.03455 -12.84715 -12.61422 -12.57836 -12.17450 -11.91971 -11.80195 -11.68115 -11.57835 -11.48040 -11.05404 -10.97224 -10.45690 -10.43969 -10.16607 -10.14568 -10.03618 -9.60782 -9.53216 -9.47335 -8.82930 -8.68569 -8.23993 -7.99540 -6.97363 -6.00969 -3.40566 0.42600 0.93419 1.99759 2.91123 3.04546 3.19872 3.38830 3.41079 3.44982 4.13765 4.41279 4.43966 4.56796 4.61470 4.80770 4.84290 4.87878 4.88768 5.04532 5.24460 5.27691 5.29657 5.32677 5.39418 5.44067 5.50651 5.61738 5.67661 5.72258 5.76241 5.76640 5.82104 5.88690 6.00268 6.10362 6.12402 6.24215 6.27572 6.38995 6.39323 6.44938 6.60283 6.66527 6.69501 6.84667 6.88876 7.07743 7.75927 7.95810 7.98368 8.31983 8.52502 8.92308 9.66645 9.99686 11.15136 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.003913 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.777411 B = 7153.789204 C = 8416.769846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.131 3.869 13 N -0.588 5.588 14 C 0.526 3.474 15 O -0.540 6.540 16 C -0.109 4.109 17 C -0.040 4.040 18 C -0.097 4.097 19 C -0.095 4.095 20 C -0.112 4.112 21 C 0.139 3.861 22 N -0.493 5.493 23 C 0.066 3.934 24 C -0.145 4.145 25 C -0.021 4.021 26 C -0.092 4.092 27 C 0.093 3.907 28 C 0.102 3.898 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.037 0.963 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 -1.876 13.215 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.715 3.285 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.391 4.391 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.010 3.990 13 N -0.320 5.320 14 C 0.313 3.687 15 O -0.417 6.417 16 C -0.149 4.149 17 C -0.041 4.041 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.033 4.033 22 N -0.201 5.201 23 C -0.077 4.077 24 C -0.164 4.164 25 C -0.026 4.026 26 C -0.110 4.110 27 C -0.034 4.034 28 C -0.024 4.024 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.507 -2.604 13.841 15.960 hybrid contribution 0.982 1.394 -0.954 1.954 sum 8.489 -1.210 12.888 15.480 Atomic orbital electron populations 1.69835 1.05737 1.26472 1.52913 1.25334 0.95175 0.97426 0.99336 0.87014 0.79496 0.84716 0.77291 1.21541 1.23211 1.19957 1.18906 0.84710 0.94438 1.41066 0.89977 1.43900 1.08066 1.34439 1.45817 1.20352 0.92854 0.87947 0.95300 1.21814 1.02237 1.00241 0.96714 1.20563 0.97061 0.88638 0.92767 1.47335 1.49760 1.07239 1.27693 1.20235 0.77657 0.89830 0.80944 1.90678 1.52160 1.26227 1.72631 1.20828 0.99353 0.98312 0.96399 1.19149 0.93696 0.97259 0.94044 1.20735 0.99858 0.98027 0.92874 1.20838 0.91428 0.99658 0.99590 1.19009 0.95231 1.01982 0.95179 1.23112 0.87745 0.94394 0.98049 1.67382 1.17419 1.14103 1.21161 1.22117 1.00335 0.96336 0.88886 1.22034 0.92721 1.00592 1.01069 1.18153 0.93903 0.96996 0.93521 1.20992 0.92139 0.99051 0.98819 1.21881 0.98615 0.83745 0.99120 1.22700 0.96868 0.91985 0.90848 0.92792 0.92675 0.94627 0.90812 0.92355 0.90391 0.92051 0.88019 0.87471 0.85868 0.85103 0.82317 0.83134 0.84132 0.84505 0.91032 0.91199 0.94542 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 13.97 55.49 0.78 -26.11 16 2 C 0.03 0.72 5.20 -17.43 -0.09 0.63 16 3 Si 0.88 21.09 23.99 -169.99 -4.08 17.01 16 4 H -0.29 -6.41 6.57 56.52 0.37 -6.04 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.40 6.66 56.52 0.38 -6.02 16 7 C -0.26 -7.02 9.67 -15.06 -0.15 -7.16 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 9 N -0.60 -13.15 2.28 -171.78 -0.39 -13.54 16 10 C 0.16 3.00 5.63 -5.23 -0.03 2.97 16 11 C -0.17 -2.87 5.64 -29.13 -0.16 -3.04 16 12 C 0.13 1.99 5.67 -5.91 -0.03 1.96 16 13 N -0.59 -9.43 2.46 -176.43 -0.43 -9.87 16 14 C 0.53 9.05 7.65 -10.99 -0.08 8.97 16 15 O -0.54 -11.13 15.52 5.55 0.09 -11.05 16 16 C -0.11 -1.53 4.22 -29.03 -0.12 -1.66 16 17 C -0.04 -0.59 4.35 -104.92 -0.46 -1.04 16 18 C -0.10 -1.22 9.58 -39.90 -0.38 -1.60 16 19 C -0.10 -1.12 9.81 -39.52 -0.39 -1.51 16 20 C -0.11 -1.53 5.74 -106.86 -0.61 -2.14 16 21 C 0.14 1.72 11.05 -16.98 -0.19 1.54 16 22 N -0.49 -6.87 10.30 -13.15 -0.14 -7.01 16 23 C 0.07 0.88 11.07 -17.96 -0.20 0.68 16 24 C -0.14 -2.06 9.88 -39.40 -0.39 -2.45 16 25 C -0.02 -0.32 5.75 -106.81 -0.61 -0.93 16 26 C -0.09 -1.48 9.41 -39.56 -0.37 -1.85 16 27 C 0.09 1.34 4.98 -4.39 -0.02 1.32 16 28 C 0.10 1.95 4.49 -1.56 -0.01 1.95 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.05 1.05 8.02 -51.93 -0.42 0.63 16 31 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 32 H 0.07 1.57 7.91 -51.93 -0.41 1.15 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.24 7.19 -51.93 -0.37 0.87 16 35 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.10 1.06 7.75 -51.93 -0.40 0.66 16 37 H 0.11 1.57 7.06 -51.93 -0.37 1.20 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.14 2.34 8.06 -52.49 -0.42 1.91 16 44 H 0.07 0.83 6.49 -51.93 -0.34 0.50 16 45 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 46 H 0.04 0.70 5.80 -51.93 -0.30 0.40 16 47 H 0.07 1.49 5.05 -51.93 -0.26 1.23 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.84 370.15 -9.56 -43.40 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.66 Total: 4.94 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.30 Total: -3.37 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.19 Total: -56.52 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.08 Total: 17.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.84 -9.56 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981609005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.306 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds