Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48495 * 109.47027 * 239.99970 * 3 2 1 5 5 H 1.48502 * 109.46817 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47089 * 119.99683 * 3 2 1 7 7 C 1.38816 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00351 * 210.71769 * 7 2 1 9 9 N 1.36946 * 119.99781 * 30.71996 * 7 2 1 10 10 C 1.49295 * 127.10305 * 16.48636 * 9 7 2 11 11 C 1.56313 * 106.46394 * 171.24343 * 10 9 7 12 12 C 1.52138 * 100.90710 * 336.89476 * 11 10 9 13 13 N 1.46505 * 111.49373 * 285.68351 * 12 11 10 14 14 C 1.34772 * 120.00388 * 288.52821 * 13 12 11 15 15 O 1.21679 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.46904 * 120.00479 * 179.97438 * 14 13 12 17 17 C 1.36378 * 126.76725 * 359.69070 * 16 14 13 18 18 N 1.35473 * 109.76663 * 179.82530 * 17 16 14 19 19 H 0.97008 * 124.78239 * 180.20260 * 18 17 16 20 20 C 1.37955 * 110.42987 * 0.45160 * 18 17 16 21 21 C 1.39125 * 133.19107 * 179.70672 * 20 18 17 22 22 C 1.37763 * 119.93016 * 180.02562 * 21 20 18 23 23 C 1.38753 * 120.63533 * 0.03101 * 22 21 20 24 24 C 1.37755 * 120.30336 * 359.92485 * 23 22 21 25 25 C 1.39277 * 119.66974 * 0.09296 * 24 23 22 26 26 C 1.51363 * 121.50115 * 150.70652 * 12 11 10 27 27 C 1.55698 * 104.22726 * 218.08372 * 26 12 11 28 28 C 1.56280 * 105.93602 * 7.82651 * 27 26 12 29 29 C 1.42694 * 127.10087 * 196.80354 * 9 7 2 30 30 H 1.08999 * 108.16764 * 103.45159 * 29 9 7 31 31 H 0.97000 * 120.00119 * 185.99708 * 1 2 3 32 32 H 1.08997 * 110.04441 * 290.62689 * 10 9 7 33 33 H 1.08998 * 110.04440 * 52.09973 * 10 9 7 34 34 H 1.09002 * 111.28164 * 218.90196 * 11 10 9 35 35 H 1.09004 * 110.97087 * 94.75662 * 11 10 9 36 36 H 0.97003 * 119.99525 * 108.52543 * 13 12 11 37 37 H 1.07997 * 125.11419 * 359.97438 * 17 16 14 38 38 H 1.08002 * 120.03204 * 0.04843 * 21 20 18 39 39 H 1.07996 * 119.68120 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.85225 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.16624 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.10056 * 99.66790 * 26 12 11 43 43 H 1.09003 * 111.18472 * 337.03265 * 26 12 11 44 44 H 1.09005 * 110.15524 * 248.70731 * 27 26 12 45 45 H 1.09004 * 110.21791 * 126.97495 * 27 26 12 46 46 H 1.09005 * 110.96904 * 266.14202 * 28 27 26 47 47 H 1.09004 * 110.97162 * 142.37627 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9765 -1.2677 0.4783 9 7 1.4696 -2.3052 -0.6048 10 6 0.3442 -2.3336 -1.5854 11 6 0.2705 -3.7957 -2.1331 12 6 1.6895 -4.2751 -1.8657 13 7 2.6413 -3.6898 -2.8133 14 6 2.6434 -4.0899 -4.1003 15 8 1.8544 -4.9369 -4.4754 16 6 3.5974 -3.5026 -5.0506 17 6 4.5313 -2.5454 -4.7834 18 7 5.2289 -2.2590 -5.9089 19 1 5.9480 -1.6103 -5.9642 20 6 4.7685 -3.0159 -6.9664 21 6 5.1307 -3.0985 -8.3071 22 6 4.4711 -3.9709 -9.1448 23 6 3.4443 -4.7715 -8.6653 24 6 3.0717 -4.7050 -7.3408 25 6 3.7297 -3.8272 -6.4827 26 6 1.9941 -5.7330 -1.5959 27 6 3.1006 -5.6964 -0.5011 28 6 3.2207 -4.2014 -0.0622 29 6 1.8615 -3.6653 -0.4239 30 1 1.1245 -4.1490 0.2171 31 1 -0.4850 -0.8354 0.0878 32 1 -0.5901 -2.0704 -1.0895 33 1 0.5426 -1.6396 -2.4021 34 1 0.0458 -3.8079 -3.1996 35 1 -0.4558 -4.3857 -1.5740 36 1 3.2700 -3.0143 -2.5143 37 1 4.6924 -2.0867 -3.8190 38 1 5.9284 -2.4797 -8.6906 39 1 4.7552 -4.0314 -10.1850 40 1 2.9355 -5.4507 -9.3333 41 1 2.2725 -5.3295 -6.9698 42 1 2.3702 -6.2107 -2.5006 43 1 1.1126 -6.2581 -1.2280 44 1 4.0480 -6.0445 -0.9128 45 1 2.8107 -6.3151 0.3482 46 1 4.0033 -3.6915 -0.6242 47 1 3.3983 -4.1227 1.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991657342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 61.725697 kcal Electronic energy + Delta-G solvation = -30182.277953 eV Core-core repulsion = 26331.186809 eV Total energy + Delta-G solvation = -3851.091144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47336 -40.37655 -37.83107 -36.98176 -34.67706 -33.05605 -32.14862 -31.66531 -30.00634 -29.56608 -28.73464 -26.81970 -25.93101 -23.92423 -23.15258 -23.00165 -21.79423 -20.63869 -20.03502 -19.50799 -18.66458 -18.19334 -17.12177 -16.44796 -16.22869 -15.65330 -15.49823 -15.04215 -14.60820 -14.51511 -14.23070 -14.14697 -13.86347 -13.70387 -13.52037 -13.32339 -12.73871 -12.72260 -12.60005 -11.99079 -11.79725 -11.77412 -11.73761 -11.42151 -11.04734 -10.89857 -10.81207 -10.74127 -10.47815 -10.31519 -10.12491 -10.02813 -9.74828 -9.69724 -9.54969 -9.24265 -8.51730 -8.40411 -8.38147 -7.80251 -6.96841 -6.13688 -3.18309 0.96008 1.49520 2.08980 2.89665 3.44560 3.47247 3.61209 3.66115 3.66541 4.01295 4.46070 4.60411 4.62443 4.70310 4.94044 5.01741 5.11096 5.14782 5.19270 5.34215 5.41599 5.51011 5.55686 5.62150 5.63759 5.70985 5.78326 5.83725 5.94977 6.01880 6.03975 6.15194 6.26775 6.29084 6.32663 6.38976 6.44744 6.46016 6.55479 6.58203 6.64733 6.66824 6.82904 6.97373 7.02541 7.09079 7.20296 7.28518 7.77086 8.09498 8.40935 8.76381 8.99316 9.76316 10.39188 11.17184 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003907 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.134227 B = 7164.386340 C = 8455.722849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.021 4.021 3 Si 1.058 2.942 4 H -0.296 1.296 5 H -0.286 1.286 6 H -0.293 1.293 7 C -0.343 4.343 8 H 0.067 0.933 9 N -0.582 5.582 10 C 0.143 3.857 11 C -0.127 4.127 12 C 0.137 3.863 13 N -0.690 5.690 14 C 0.588 3.412 15 O -0.550 6.550 16 C -0.221 4.221 17 C 0.108 3.892 18 N -0.581 5.581 19 H 0.419 0.581 20 C 0.084 3.916 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.147 4.147 24 C -0.060 4.060 25 C -0.062 4.062 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.111 4.111 29 C 0.157 3.843 30 H 0.020 0.980 31 H 0.270 0.730 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.180 0.820 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.337 -8.215 -12.355 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.224 4.224 3 Si 0.888 3.112 4 H -0.223 1.223 5 H -0.212 1.212 6 H -0.221 1.221 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.306 5.306 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.049 3.951 13 N -0.341 5.341 14 C 0.376 3.624 15 O -0.429 6.429 16 C -0.231 4.231 17 C -0.024 4.024 18 N -0.182 5.182 19 H 0.256 0.744 20 C -0.022 4.022 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.166 4.166 24 C -0.079 4.079 25 C -0.066 4.066 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.149 4.149 29 C 0.048 3.952 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.197 0.803 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.712 -6.957 -12.590 17.934 hybrid contribution 0.859 -0.801 0.350 1.226 sum 11.571 -7.757 -12.239 18.544 Atomic orbital electron populations 1.70788 1.06893 1.30270 1.46783 1.25630 0.96251 1.00945 0.99562 0.83622 0.75018 0.76599 0.75986 1.22349 1.21167 1.22062 1.19631 1.01609 0.88855 1.36913 0.91550 1.43676 1.38987 1.00474 1.47485 1.22161 0.91821 0.92722 0.91415 1.22578 0.95044 0.97642 1.01360 1.21428 0.89166 0.92641 0.91891 1.45519 1.37814 1.42757 1.07975 1.17148 0.82514 0.81560 0.81223 1.90716 1.40733 1.33274 1.78220 1.20202 1.03732 1.05336 0.93859 1.22225 0.92496 0.96519 0.91139 1.41524 1.32791 1.36541 1.07331 0.74378 1.18276 0.97861 0.96212 0.89818 1.19978 1.02692 1.02488 0.89893 1.20783 0.96300 0.96059 0.99046 1.20962 0.98963 1.01211 0.95426 1.20729 0.98445 0.96525 0.92192 1.18775 0.97147 0.98562 0.92134 1.21893 0.98891 0.95478 0.98789 1.22824 0.98452 0.96312 0.97920 1.21787 0.97756 0.94677 1.00719 1.20800 0.94962 0.87656 0.91823 0.96247 0.91829 0.93980 0.94524 0.90943 0.91192 0.76507 0.80251 0.86289 0.85814 0.85913 0.84870 0.91019 0.91071 0.92230 0.91969 0.91834 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.75 13.01 55.49 0.72 -26.03 16 2 C -0.02 -0.57 5.15 -17.43 -0.09 -0.66 16 3 Si 1.06 24.31 30.01 -169.99 -5.10 19.21 16 4 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.34 -9.02 10.01 -15.05 -0.15 -9.17 16 8 H 0.07 1.73 7.99 -52.49 -0.42 1.31 16 9 N -0.58 -13.78 3.01 -162.64 -0.49 -14.26 16 10 C 0.14 3.31 5.84 -0.71 0.00 3.30 16 11 C -0.13 -2.49 6.19 -25.39 -0.16 -2.64 16 12 C 0.14 2.45 0.38 -130.63 -0.05 2.41 16 13 N -0.69 -11.81 4.40 -47.73 -0.21 -12.02 16 14 C 0.59 10.34 7.14 -12.76 -0.09 10.25 16 15 O -0.55 -10.99 14.31 5.21 0.07 -10.92 16 16 C -0.22 -3.39 6.27 -103.31 -0.65 -4.04 16 17 C 0.11 1.30 11.33 -16.61 -0.19 1.12 16 18 N -0.58 -5.93 5.99 -10.48 -0.06 -6.00 16 19 H 0.42 2.76 8.96 -40.82 -0.37 2.40 16 20 C 0.08 1.03 7.26 -83.97 -0.61 0.42 16 21 C -0.13 -1.34 10.07 -39.43 -0.40 -1.74 16 22 C -0.10 -1.03 10.01 -39.56 -0.40 -1.42 16 23 C -0.15 -1.66 10.03 -39.57 -0.40 -2.06 16 24 C -0.06 -0.85 9.85 -39.37 -0.39 -1.24 16 25 C -0.06 -0.92 6.27 -104.95 -0.66 -1.58 16 26 C -0.11 -1.77 6.06 -26.12 -0.16 -1.93 16 27 C -0.12 -1.66 6.93 -23.53 -0.16 -1.82 16 28 C -0.11 -1.84 6.45 -26.21 -0.17 -2.00 16 29 C 0.16 3.12 2.64 -68.73 -0.18 2.94 16 30 H 0.02 0.43 7.96 -51.93 -0.41 0.01 16 31 H 0.27 8.03 6.06 -40.82 -0.25 7.78 16 32 H 0.04 1.06 6.16 -51.93 -0.32 0.74 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.46 7.19 -51.93 -0.37 1.08 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.40 6.61 6.62 -40.82 -0.27 6.34 16 37 H 0.18 1.76 7.38 -52.49 -0.39 1.37 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.99 7.45 -52.49 -0.39 1.60 16 42 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.03 7.28 -51.93 -0.38 0.65 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -32.84 372.86 -10.87 -43.70 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.52 Total: 10.58 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -4.90 Total: -9.88 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.04 Total: -58.31 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.10 Total: 19.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.84 -10.87 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.427 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds