Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48495 * 109.47027 * 239.99970 * 3 2 1 5 5 H 1.48502 * 109.46817 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47089 * 119.99683 * 3 2 1 7 7 C 1.38816 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00351 * 210.71769 * 7 2 1 9 9 N 1.36946 * 119.99781 * 30.71996 * 7 2 1 10 10 C 1.49295 * 127.10305 * 16.48636 * 9 7 2 11 11 C 1.56313 * 106.46394 * 171.24343 * 10 9 7 12 12 C 1.52138 * 100.90710 * 336.89476 * 11 10 9 13 13 N 1.46505 * 111.49373 * 285.68351 * 12 11 10 14 14 C 1.34772 * 120.00388 * 288.52821 * 13 12 11 15 15 O 1.21679 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.46904 * 120.00479 * 179.97438 * 14 13 12 17 17 C 1.36378 * 126.76725 * 359.69070 * 16 14 13 18 18 N 1.35473 * 109.76663 * 179.82530 * 17 16 14 19 19 H 0.97008 * 124.78239 * 180.20260 * 18 17 16 20 20 C 1.37955 * 110.42987 * 0.45160 * 18 17 16 21 21 C 1.39125 * 133.19107 * 179.70672 * 20 18 17 22 22 C 1.37763 * 119.93016 * 180.02562 * 21 20 18 23 23 C 1.38753 * 120.63533 * 0.03101 * 22 21 20 24 24 C 1.37755 * 120.30336 * 359.92485 * 23 22 21 25 25 C 1.39277 * 119.66974 * 0.09296 * 24 23 22 26 26 C 1.51363 * 121.50115 * 150.70652 * 12 11 10 27 27 C 1.55698 * 104.22726 * 218.08372 * 26 12 11 28 28 C 1.56280 * 105.93602 * 7.82651 * 27 26 12 29 29 C 1.42694 * 127.10087 * 196.80354 * 9 7 2 30 30 H 1.08999 * 108.16764 * 103.45159 * 29 9 7 31 31 H 0.97000 * 120.00119 * 185.99708 * 1 2 3 32 32 H 1.08997 * 110.04441 * 290.62689 * 10 9 7 33 33 H 1.08998 * 110.04440 * 52.09973 * 10 9 7 34 34 H 1.09002 * 111.28164 * 218.90196 * 11 10 9 35 35 H 1.09004 * 110.97087 * 94.75662 * 11 10 9 36 36 H 0.97003 * 119.99525 * 108.52543 * 13 12 11 37 37 H 1.07997 * 125.11419 * 359.97438 * 17 16 14 38 38 H 1.08002 * 120.03204 * 0.04843 * 21 20 18 39 39 H 1.07996 * 119.68120 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.85225 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.16624 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.10056 * 99.66790 * 26 12 11 43 43 H 1.09003 * 111.18472 * 337.03265 * 26 12 11 44 44 H 1.09005 * 110.15524 * 248.70731 * 27 26 12 45 45 H 1.09004 * 110.21791 * 126.97495 * 27 26 12 46 46 H 1.09005 * 110.96904 * 266.14202 * 28 27 26 47 47 H 1.09004 * 110.97162 * 142.37627 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9765 -1.2677 0.4783 9 7 1.4696 -2.3052 -0.6048 10 6 0.3442 -2.3336 -1.5854 11 6 0.2705 -3.7957 -2.1331 12 6 1.6895 -4.2751 -1.8657 13 7 2.6413 -3.6898 -2.8133 14 6 2.6434 -4.0899 -4.1003 15 8 1.8544 -4.9369 -4.4754 16 6 3.5974 -3.5026 -5.0506 17 6 4.5313 -2.5454 -4.7834 18 7 5.2289 -2.2590 -5.9089 19 1 5.9480 -1.6103 -5.9642 20 6 4.7685 -3.0159 -6.9664 21 6 5.1307 -3.0985 -8.3071 22 6 4.4711 -3.9709 -9.1448 23 6 3.4443 -4.7715 -8.6653 24 6 3.0717 -4.7050 -7.3408 25 6 3.7297 -3.8272 -6.4827 26 6 1.9941 -5.7330 -1.5959 27 6 3.1006 -5.6964 -0.5011 28 6 3.2207 -4.2014 -0.0622 29 6 1.8615 -3.6653 -0.4239 30 1 1.1245 -4.1490 0.2171 31 1 -0.4850 -0.8354 0.0878 32 1 -0.5901 -2.0704 -1.0895 33 1 0.5426 -1.6396 -2.4021 34 1 0.0458 -3.8079 -3.1996 35 1 -0.4558 -4.3857 -1.5740 36 1 3.2700 -3.0143 -2.5143 37 1 4.6924 -2.0867 -3.8190 38 1 5.9284 -2.4797 -8.6906 39 1 4.7552 -4.0314 -10.1850 40 1 2.9355 -5.4507 -9.3333 41 1 2.2725 -5.3295 -6.9698 42 1 2.3702 -6.2107 -2.5006 43 1 1.1126 -6.2581 -1.2280 44 1 4.0480 -6.0445 -0.9128 45 1 2.8107 -6.3151 0.3482 46 1 4.0033 -3.6915 -0.6242 47 1 3.3983 -4.1227 1.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991657342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 42.098684 kcal Electronic energy + Delta-G solvation = -30183.129044 eV Core-core repulsion = 26331.186809 eV Total energy + Delta-G solvation = -3851.942235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47257 -41.81119 -39.24910 -37.86918 -36.41582 -34.46257 -33.71811 -32.90656 -31.61578 -30.47325 -29.78059 -28.42160 -27.44161 -25.83028 -24.38573 -23.89552 -22.68602 -22.25353 -21.46374 -20.98972 -20.08100 -19.15970 -18.97067 -17.51878 -17.40391 -17.04510 -16.40953 -16.34517 -16.29082 -15.78126 -15.63449 -15.51122 -15.19000 -14.89322 -14.77693 -14.58476 -14.51900 -14.08411 -13.62047 -13.51509 -13.41137 -12.98924 -12.66395 -12.61064 -12.48752 -12.47926 -12.26053 -12.14848 -11.96956 -11.93107 -11.81406 -11.57234 -11.39960 -11.19011 -10.72818 -10.71520 -10.37980 -9.93795 -9.28092 -8.97749 -8.75536 -8.27356 -5.28727 0.02110 0.58695 1.05151 1.59607 1.67046 1.85044 2.04100 2.32200 2.49374 2.66333 2.98785 2.99772 3.19925 3.66803 3.72491 3.80009 3.86370 3.92110 4.01662 4.14056 4.20870 4.24279 4.31250 4.36777 4.43374 4.47396 4.54681 4.62270 4.71436 4.75974 4.80398 4.86155 4.90006 4.93934 5.02022 5.05825 5.15024 5.15823 5.18245 5.35680 5.45228 5.47594 5.53504 5.64652 5.69951 5.75638 5.80370 6.13806 6.30186 6.53327 6.75719 6.91192 7.42548 7.72176 8.40987 9.03255 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003907 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.134227 B = 7164.386340 C = 8455.722849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.079 4.079 3 Si 1.110 2.890 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.146 3.854 13 N -0.688 5.688 14 C 0.587 3.413 15 O -0.584 6.584 16 C -0.269 4.269 17 C 0.134 3.866 18 N -0.560 5.560 19 H 0.439 0.561 20 C 0.072 3.928 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.097 4.097 25 C -0.092 4.092 26 C -0.108 4.108 27 C -0.103 4.103 28 C -0.106 4.106 29 C 0.146 3.854 30 H 0.007 0.993 31 H 0.253 0.747 32 H 0.014 0.986 33 H 0.009 0.991 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.402 0.598 37 H 0.204 0.796 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.032 -8.112 -13.616 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.275 4.275 3 Si 0.935 3.065 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.028 3.972 11 C -0.157 4.157 12 C 0.058 3.942 13 N -0.338 5.338 14 C 0.377 3.623 15 O -0.466 6.466 16 C -0.280 4.280 17 C -0.001 4.001 18 N -0.163 5.163 19 H 0.280 0.720 20 C -0.033 4.033 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.159 4.159 24 C -0.116 4.116 25 C -0.097 4.097 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.144 4.144 29 C 0.037 3.963 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.238 0.762 37 H 0.220 0.780 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.474 -6.874 -13.866 21.190 hybrid contribution -0.293 -0.865 0.668 1.132 sum 14.181 -7.738 -13.197 20.860 Atomic orbital electron populations 1.70915 1.08143 1.29279 1.50380 1.27014 0.96237 1.04541 0.99702 0.82928 0.73939 0.72149 0.77477 1.20210 1.22877 1.19879 1.19933 1.01367 0.89560 1.35620 0.90930 1.43786 1.38934 1.01700 1.47254 1.21945 0.90624 0.94281 0.90332 1.22476 0.97091 0.95573 1.00571 1.21351 0.88101 0.93986 0.90758 1.45453 1.37580 1.42858 1.07912 1.17504 0.82456 0.81015 0.81342 1.90682 1.42311 1.34935 1.78708 1.20115 1.05621 1.08121 0.94121 1.22479 0.90781 0.94546 0.92259 1.41488 1.32521 1.36059 1.06237 0.71956 1.18499 0.97550 0.96240 0.90993 1.20448 1.02806 1.02096 0.88792 1.21228 0.95225 0.95001 1.00764 1.21268 0.99038 1.01236 0.94385 1.20714 0.99261 0.97798 0.93836 1.19059 0.98599 0.99758 0.92265 1.21888 1.00002 0.93570 0.99243 1.22753 0.98640 0.94825 0.97836 1.21801 0.95544 0.95994 1.01053 1.21006 0.96846 0.85469 0.92967 0.97558 0.93621 0.96824 0.97228 0.91866 0.90085 0.76153 0.77955 0.82775 0.82220 0.83983 0.87446 0.91759 0.90282 0.90293 0.90029 0.91197 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.01 21.65 0.28 -57.48 16 2 C -0.08 -4.36 5.15 84.86 0.44 -3.92 16 3 Si 1.11 49.00 30.01 68.60 2.06 51.06 16 4 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.34 -17.80 10.01 84.03 0.84 -16.95 16 8 H 0.07 3.70 7.99 -2.92 -0.02 3.68 16 9 N -0.59 -28.63 3.01 -668.46 -2.01 -30.64 16 10 C 0.15 7.46 5.84 86.99 0.51 7.97 16 11 C -0.12 -4.82 6.19 31.46 0.19 -4.62 16 12 C 0.15 5.29 0.38 4.37 0.00 5.29 16 13 N -0.69 -23.69 4.40 -423.14 -1.86 -25.56 16 14 C 0.59 21.27 7.14 86.51 0.62 21.89 16 15 O -0.58 -24.58 14.31 -4.28 -0.06 -24.65 16 16 C -0.27 -8.33 6.27 -19.02 -0.12 -8.45 16 17 C 0.13 3.01 11.33 83.70 0.95 3.96 16 18 N -0.56 -9.95 5.99 -187.08 -1.12 -11.07 16 19 H 0.44 4.14 8.96 -92.70 -0.83 3.31 16 20 C 0.07 1.64 7.26 38.92 0.28 1.92 16 21 C -0.12 -2.08 10.07 22.37 0.23 -1.86 16 22 C -0.10 -1.74 10.01 22.28 0.22 -1.51 16 23 C -0.14 -3.03 10.03 22.28 0.22 -2.81 16 24 C -0.10 -2.86 9.85 22.41 0.22 -2.64 16 25 C -0.09 -2.78 6.27 -20.08 -0.13 -2.91 16 26 C -0.11 -3.34 6.06 30.99 0.19 -3.15 16 27 C -0.10 -2.65 6.93 32.67 0.23 -2.43 16 28 C -0.11 -3.30 6.45 30.93 0.20 -3.10 16 29 C 0.15 5.77 2.64 46.47 0.12 5.89 16 30 H 0.01 0.30 7.96 -2.39 -0.02 0.28 16 31 H 0.25 15.90 6.06 -92.71 -0.56 15.33 16 32 H 0.01 0.75 6.16 -2.39 -0.01 0.73 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 2.69 7.19 -2.39 -0.02 2.67 16 35 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.40 13.12 6.62 -92.71 -0.61 12.51 16 37 H 0.20 3.46 7.38 -2.91 -0.02 3.44 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.11 3.56 7.45 -2.91 -0.02 3.54 16 42 H 0.06 2.12 6.84 -2.39 -0.02 2.10 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 2.10 7.28 -2.38 -0.02 2.08 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -75.72 372.86 2.28 -73.45 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.22 Total: 32.31 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.22 Total: -7.42 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -4.71 Total: -124.75 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.06 Total: 51.06 kcal Total: -75.72 2.28 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.545 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds