Wall clock time and date at job start Sat Apr 11 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47109 * 240.00193 * 3 2 1 5 5 H 1.48507 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47565 * 119.99730 * 3 2 1 7 7 C 1.38816 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00424 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99492 * 359.97438 * 7 2 1 10 10 C 1.49297 * 127.10384 * 359.97438 * 9 7 2 11 11 C 1.56234 * 106.50868 * 188.65538 * 10 9 7 12 12 C 1.52144 * 100.80934 * 23.44296 * 11 10 9 13 13 N 1.46499 * 111.09599 * 73.98412 * 12 11 10 14 14 C 1.34777 * 120.00195 * 61.00807 * 13 12 11 15 15 O 1.21673 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.46910 * 119.99874 * 180.27675 * 14 13 12 17 17 C 1.36379 * 126.77079 * 359.41350 * 16 14 13 18 18 N 1.35471 * 109.76904 * 179.86137 * 17 16 14 19 19 H 0.96998 * 124.78706 * 180.14577 * 18 17 16 20 20 C 1.37960 * 110.42717 * 0.42052 * 18 17 16 21 21 C 1.39119 * 133.18972 * 179.75305 * 20 18 17 22 22 C 1.37769 * 119.93460 * 179.97438 * 21 20 18 23 23 C 1.38756 * 120.63143 * 0.02562 * 22 21 20 24 24 C 1.37760 * 120.30067 * 359.97438 * 23 22 21 25 25 C 1.39278 * 119.67039 * 359.97438 * 24 23 22 26 26 C 1.51235 * 122.09083 * 208.15363 * 12 11 10 27 27 C 1.56585 * 104.17452 * 141.04366 * 26 12 11 28 28 C 1.56280 * 106.07095 * 353.43230 * 27 26 12 29 29 C 1.42698 * 127.10511 * 179.97438 * 9 7 2 30 30 H 1.09005 * 108.15691 * 256.51537 * 29 9 7 31 31 H 0.97002 * 119.99921 * 0.02562 * 1 2 3 32 32 H 1.08992 * 110.05665 * 69.39312 * 10 9 7 33 33 H 1.08998 * 110.04809 * 307.91088 * 10 9 7 34 34 H 1.09001 * 111.15010 * 265.56154 * 11 10 9 35 35 H 1.08999 * 111.15139 * 141.33272 * 11 10 9 36 36 H 0.97000 * 120.00069 * 241.01535 * 13 12 11 37 37 H 1.07996 * 125.11281 * 0.02562 * 17 16 14 38 38 H 1.08003 * 120.03627 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.68265 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.84970 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.16122 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.41045 * 260.70334 * 26 12 11 43 43 H 1.09006 * 110.40553 * 23.13412 * 26 12 11 44 44 H 1.08992 * 110.45082 * 234.08130 * 27 26 12 45 45 H 1.09001 * 109.79218 * 112.43203 * 27 26 12 46 46 H 1.08998 * 110.97034 * 217.20365 * 28 27 26 47 47 H 1.08997 * 110.97218 * 93.43174 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1560 -2.5726 0.0028 11 6 -0.4133 -4.0969 0.2291 12 6 0.8812 -4.5059 0.9159 13 7 0.9174 -4.0282 2.3003 14 6 -0.0155 -4.4419 3.1806 15 8 -0.8876 -5.2125 2.8256 16 6 0.0173 -3.9580 4.5674 17 6 0.9293 -3.1029 5.1123 18 7 0.6324 -2.8864 6.4162 19 1 1.1387 -2.3113 7.0110 20 6 -0.4882 -3.6039 6.7804 21 6 -1.1894 -3.7331 7.9750 22 6 -2.3014 -4.5442 8.0352 23 6 -2.7322 -5.2377 6.9132 24 6 -2.0513 -5.1228 5.7212 25 6 -0.9261 -4.3055 5.6460 26 6 1.4390 -5.9076 0.8096 27 6 2.9857 -5.6966 0.6869 28 6 3.2032 -4.1541 0.5606 29 6 1.8806 -3.7026 0.0018 30 1 1.7894 -4.1100 -1.0052 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5722 -2.2616 -0.9553 33 1 -0.6039 -1.9941 0.8108 34 1 -0.5376 -4.6198 -0.7191 35 1 -1.2722 -4.2583 0.8806 36 1 1.6128 -3.4140 2.5834 37 1 1.7613 -2.6623 4.5831 38 1 -0.8625 -3.1981 8.8544 39 1 -2.8425 -4.6418 8.9647 40 1 -3.6053 -5.8703 6.9747 41 1 -2.3883 -5.6639 4.8494 42 1 1.1864 -6.4856 1.6985 43 1 1.0600 -6.4006 -0.0857 44 1 3.3702 -6.2038 -0.1979 45 1 3.4818 -6.0739 1.5811 46 1 4.0157 -3.9300 -0.1305 47 1 3.3879 -3.7050 1.5364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991657346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:45 Heat of formation + Delta-G solvation = 64.653335 kcal Electronic energy + Delta-G solvation = -30255.691417 eV Core-core repulsion = 26404.727224 eV Total energy + Delta-G solvation = -3850.964192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37607 -40.21480 -37.67577 -36.89360 -34.38683 -32.90034 -32.04727 -31.54781 -29.96170 -29.48115 -28.61612 -26.91568 -25.72453 -24.04732 -23.01190 -22.91722 -21.70851 -20.50037 -19.91321 -19.40595 -18.54821 -18.10343 -16.47823 -16.35462 -16.12655 -15.59179 -15.42577 -14.90142 -14.52736 -14.45782 -14.15551 -14.05137 -13.90517 -13.77281 -13.31709 -13.17848 -12.62178 -12.48738 -12.27218 -11.88352 -11.71295 -11.65623 -11.36870 -11.30461 -11.00778 -10.95149 -10.91095 -10.79858 -10.45072 -10.29651 -9.99879 -9.91860 -9.67494 -9.64251 -9.51404 -8.99841 -8.66296 -8.35249 -8.29454 -7.70351 -6.85125 -5.74401 -3.09093 1.05087 1.57993 2.19485 2.98356 3.34644 3.40423 3.42214 3.71278 3.80179 4.12895 4.44336 4.66998 4.70795 4.78709 5.03217 5.10079 5.22150 5.24582 5.25947 5.47689 5.50114 5.59937 5.63719 5.70927 5.72146 5.87007 5.88505 5.98708 6.04984 6.11026 6.17897 6.31914 6.34679 6.40848 6.40976 6.47231 6.53719 6.54840 6.65943 6.73573 6.76069 6.88925 6.96750 7.11092 7.30739 7.37865 7.55277 7.63607 7.80860 8.20979 8.22382 8.90388 9.13179 9.79900 10.50405 11.37387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.004036 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.261336 B = 6935.148604 C = 8211.253077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.142 4.142 12 C 0.136 3.864 13 N -0.688 5.688 14 C 0.589 3.411 15 O -0.550 6.550 16 C -0.217 4.217 17 C 0.108 3.892 18 N -0.581 5.581 19 H 0.418 0.582 20 C 0.084 3.916 21 C -0.131 4.131 22 C -0.103 4.103 23 C -0.148 4.148 24 C -0.059 4.059 25 C -0.061 4.061 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.114 4.114 29 C 0.157 3.843 30 H 0.021 0.979 31 H 0.253 0.747 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.396 0.604 37 H 0.179 0.821 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -9.407 13.400 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.360 4.360 8 H 0.095 0.905 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.338 5.338 14 C 0.377 3.623 15 O -0.430 6.430 16 C -0.228 4.228 17 C -0.024 4.024 18 N -0.183 5.183 19 H 0.255 0.745 20 C -0.022 4.022 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.167 4.167 24 C -0.078 4.078 25 C -0.066 4.066 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.153 4.153 29 C 0.047 3.953 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.196 0.804 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.152 0.848 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.408 -9.596 13.158 16.346 hybrid contribution 1.106 1.740 0.345 2.091 sum 2.514 -7.856 13.503 15.823 Atomic orbital electron populations 1.69919 1.04867 1.25195 1.56263 1.24784 0.95563 0.97523 1.02134 0.86281 0.78478 0.83591 0.77822 1.21209 1.21686 1.21319 1.18944 0.90165 0.82344 1.44571 0.90461 1.43636 1.01780 0.99117 1.86081 1.21990 0.83004 0.88841 1.00554 1.22830 0.97014 0.99169 0.99118 1.21490 0.98770 0.93424 0.81551 1.45480 1.30516 1.48173 1.09621 1.17102 0.81360 0.80471 0.83377 1.90698 1.36510 1.36499 1.79271 1.20228 1.00321 1.07631 0.94582 1.22186 0.99363 0.97169 0.83722 1.41505 1.25037 1.41266 1.10469 0.74485 1.18270 0.90525 0.97502 0.95865 1.19963 0.97324 1.03096 0.94759 1.20772 0.95984 0.96922 0.98567 1.20954 1.00999 1.01901 0.92814 1.20736 0.92790 0.96216 0.98041 1.18782 0.96771 0.99566 0.91479 1.22053 0.94821 0.96304 1.01916 1.22961 0.95797 0.95799 1.00901 1.21841 0.97976 0.94573 1.00916 1.20810 0.91610 0.87520 0.95362 0.96157 0.93649 0.94882 0.91788 0.91929 0.90333 0.76885 0.80366 0.86372 0.85886 0.85956 0.84837 0.91444 0.91270 0.91956 0.92336 0.91801 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.55 55.49 0.59 -25.66 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.05 10.29 -15.06 -0.15 -6.20 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.58 -13.98 3.16 -162.70 -0.51 -14.50 16 10 C 0.18 4.38 5.33 -0.75 0.00 4.37 16 11 C -0.14 -2.93 6.10 -25.43 -0.16 -3.08 16 12 C 0.14 2.49 0.42 -130.71 -0.06 2.43 16 13 N -0.69 -12.19 4.47 -47.80 -0.21 -12.41 16 14 C 0.59 10.90 7.19 -12.75 -0.09 10.81 16 15 O -0.55 -11.51 14.27 5.21 0.07 -11.44 16 16 C -0.22 -3.53 6.27 -103.31 -0.65 -4.17 16 17 C 0.11 1.38 11.33 -16.62 -0.19 1.19 16 18 N -0.58 -6.37 5.99 -10.49 -0.06 -6.43 16 19 H 0.42 3.04 8.96 -40.82 -0.37 2.67 16 20 C 0.08 1.10 7.26 -83.97 -0.61 0.49 16 21 C -0.13 -1.44 10.07 -39.43 -0.40 -1.84 16 22 C -0.10 -1.10 10.01 -39.56 -0.40 -1.50 16 23 C -0.15 -1.77 10.03 -39.56 -0.40 -2.17 16 24 C -0.06 -0.89 9.85 -39.37 -0.39 -1.27 16 25 C -0.06 -0.97 6.27 -104.95 -0.66 -1.63 16 26 C -0.11 -1.76 6.24 -25.69 -0.16 -1.92 16 27 C -0.12 -1.60 6.95 -23.04 -0.16 -1.76 16 28 C -0.11 -1.84 6.46 -26.21 -0.17 -2.01 16 29 C 0.16 3.10 2.65 -68.74 -0.18 2.92 16 30 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.03 0.88 7.98 -51.93 -0.41 0.47 16 33 H 0.06 1.75 7.05 -51.93 -0.37 1.39 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.71 6.27 -51.93 -0.33 1.38 16 36 H 0.40 6.68 6.44 -40.82 -0.26 6.42 16 37 H 0.18 1.85 7.38 -52.49 -0.39 1.47 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.13 2.10 7.45 -52.49 -0.39 1.71 16 42 H 0.07 1.10 7.73 -51.93 -0.40 0.70 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.99 7.17 -51.93 -0.37 0.62 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -32.37 372.95 -11.07 -43.44 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.63 Total: 10.66 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.91 Total: -5.53 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.21 Total: -59.00 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.37 -11.07 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.093 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds