Wall clock time and date at job start Sat Apr 11 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47109 * 240.00193 * 3 2 1 5 5 H 1.48507 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47565 * 119.99730 * 3 2 1 7 7 C 1.38816 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00424 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99492 * 359.97438 * 7 2 1 10 10 C 1.49297 * 127.10384 * 359.97438 * 9 7 2 11 11 C 1.56234 * 106.50868 * 188.65538 * 10 9 7 12 12 C 1.52144 * 100.80934 * 23.44296 * 11 10 9 13 13 N 1.46499 * 111.09599 * 73.98412 * 12 11 10 14 14 C 1.34777 * 120.00195 * 61.00807 * 13 12 11 15 15 O 1.21673 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.46910 * 119.99874 * 180.27675 * 14 13 12 17 17 C 1.36379 * 126.77079 * 359.41350 * 16 14 13 18 18 N 1.35471 * 109.76904 * 179.86137 * 17 16 14 19 19 H 0.96998 * 124.78706 * 180.14577 * 18 17 16 20 20 C 1.37960 * 110.42717 * 0.42052 * 18 17 16 21 21 C 1.39119 * 133.18972 * 179.75305 * 20 18 17 22 22 C 1.37769 * 119.93460 * 179.97438 * 21 20 18 23 23 C 1.38756 * 120.63143 * 0.02562 * 22 21 20 24 24 C 1.37760 * 120.30067 * 359.97438 * 23 22 21 25 25 C 1.39278 * 119.67039 * 359.97438 * 24 23 22 26 26 C 1.51235 * 122.09083 * 208.15363 * 12 11 10 27 27 C 1.56585 * 104.17452 * 141.04366 * 26 12 11 28 28 C 1.56280 * 106.07095 * 353.43230 * 27 26 12 29 29 C 1.42698 * 127.10511 * 179.97438 * 9 7 2 30 30 H 1.09005 * 108.15691 * 256.51537 * 29 9 7 31 31 H 0.97002 * 119.99921 * 0.02562 * 1 2 3 32 32 H 1.08992 * 110.05665 * 69.39312 * 10 9 7 33 33 H 1.08998 * 110.04809 * 307.91088 * 10 9 7 34 34 H 1.09001 * 111.15010 * 265.56154 * 11 10 9 35 35 H 1.08999 * 111.15139 * 141.33272 * 11 10 9 36 36 H 0.97000 * 120.00069 * 241.01535 * 13 12 11 37 37 H 1.07996 * 125.11281 * 0.02562 * 17 16 14 38 38 H 1.08003 * 120.03627 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.68265 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.84970 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.16122 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.41045 * 260.70334 * 26 12 11 43 43 H 1.09006 * 110.40553 * 23.13412 * 26 12 11 44 44 H 1.08992 * 110.45082 * 234.08130 * 27 26 12 45 45 H 1.09001 * 109.79218 * 112.43203 * 27 26 12 46 46 H 1.08998 * 110.97034 * 217.20365 * 28 27 26 47 47 H 1.08997 * 110.97218 * 93.43174 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1560 -2.5726 0.0028 11 6 -0.4133 -4.0969 0.2291 12 6 0.8812 -4.5059 0.9159 13 7 0.9174 -4.0282 2.3003 14 6 -0.0155 -4.4419 3.1806 15 8 -0.8876 -5.2125 2.8256 16 6 0.0173 -3.9580 4.5674 17 6 0.9293 -3.1029 5.1123 18 7 0.6324 -2.8864 6.4162 19 1 1.1387 -2.3113 7.0110 20 6 -0.4882 -3.6039 6.7804 21 6 -1.1894 -3.7331 7.9750 22 6 -2.3014 -4.5442 8.0352 23 6 -2.7322 -5.2377 6.9132 24 6 -2.0513 -5.1228 5.7212 25 6 -0.9261 -4.3055 5.6460 26 6 1.4390 -5.9076 0.8096 27 6 2.9857 -5.6966 0.6869 28 6 3.2032 -4.1541 0.5606 29 6 1.8806 -3.7026 0.0018 30 1 1.7894 -4.1100 -1.0052 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5722 -2.2616 -0.9553 33 1 -0.6039 -1.9941 0.8108 34 1 -0.5376 -4.6198 -0.7191 35 1 -1.2722 -4.2583 0.8806 36 1 1.6128 -3.4140 2.5834 37 1 1.7613 -2.6623 4.5831 38 1 -0.8625 -3.1981 8.8544 39 1 -2.8425 -4.6418 8.9647 40 1 -3.6053 -5.8703 6.9747 41 1 -2.3883 -5.6639 4.8494 42 1 1.1864 -6.4856 1.6985 43 1 1.0600 -6.4006 -0.0857 44 1 3.3702 -6.2038 -0.1979 45 1 3.4818 -6.0739 1.5811 46 1 4.0157 -3.9300 -0.1305 47 1 3.3879 -3.7050 1.5364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991657346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:44 Heat of formation + Delta-G solvation = 45.093194 kcal Electronic energy + Delta-G solvation = -30256.539608 eV Core-core repulsion = 26404.727224 eV Total energy + Delta-G solvation = -3851.812384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42705 -41.68293 -39.13753 -37.84921 -36.12171 -34.32746 -33.62620 -32.88740 -31.58336 -30.45558 -29.73189 -28.51413 -27.24914 -25.91645 -24.30738 -23.87927 -22.66603 -22.17899 -21.29658 -20.88374 -20.01992 -19.12472 -18.32825 -17.49283 -17.36239 -17.08785 -16.41885 -16.29264 -16.19754 -15.71235 -15.68729 -15.49756 -15.14499 -14.79029 -14.65561 -14.52204 -14.07271 -14.01845 -13.57162 -13.49453 -13.02215 -12.92328 -12.82663 -12.64809 -12.60303 -12.54149 -12.15736 -12.11651 -12.03955 -11.90665 -11.74595 -11.51619 -11.32590 -11.06932 -10.70588 -10.67942 -10.52592 -9.82192 -9.26139 -8.84634 -8.72653 -7.80356 -5.16643 0.04615 0.60577 1.08722 1.48137 1.51291 1.57409 2.06559 2.39338 2.52725 2.56911 3.01503 3.14029 3.39304 3.74505 3.77637 3.88831 3.92052 3.98123 4.14325 4.22194 4.31274 4.38020 4.40489 4.45359 4.52091 4.59971 4.62749 4.67605 4.78157 4.82181 4.85634 4.98408 5.02429 5.11420 5.15487 5.17418 5.27205 5.32031 5.47062 5.52160 5.55204 5.58940 5.63179 5.66383 5.70854 5.73135 5.89341 6.15549 6.20310 6.55800 6.82983 7.06199 7.50527 7.79843 8.53821 9.31387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.004036 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.261336 B = 6935.148604 C = 8211.253077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.281 1.281 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.231 4.231 8 H 0.092 0.908 9 N -0.594 5.594 10 C 0.194 3.806 11 C -0.134 4.134 12 C 0.142 3.858 13 N -0.685 5.685 14 C 0.585 3.415 15 O -0.587 6.587 16 C -0.268 4.268 17 C 0.134 3.866 18 N -0.561 5.561 19 H 0.439 0.561 20 C 0.072 3.928 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.098 4.098 25 C -0.094 4.094 26 C -0.109 4.109 27 C -0.101 4.101 28 C -0.109 4.109 29 C 0.147 3.853 30 H 0.014 0.986 31 H 0.243 0.757 32 H -0.003 1.003 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.400 0.600 37 H 0.204 0.796 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -9.631 16.035 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.207 1.207 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.359 4.359 8 H 0.110 0.890 9 N -0.317 5.317 10 C 0.070 3.930 11 C -0.173 4.173 12 C 0.054 3.946 13 N -0.335 5.335 14 C 0.375 3.625 15 O -0.469 6.469 16 C -0.279 4.279 17 C -0.001 4.001 18 N -0.164 5.164 19 H 0.280 0.720 20 C -0.033 4.033 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.160 4.160 24 C -0.116 4.116 25 C -0.098 4.098 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.147 4.147 29 C 0.038 3.962 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.221 0.779 38 H 0.173 0.827 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.087 -9.835 15.833 19.082 hybrid contribution 0.222 1.792 -0.437 1.858 sum 4.309 -8.044 15.396 17.897 Atomic orbital electron populations 1.70166 1.06569 1.25086 1.58337 1.25587 0.96228 1.00881 1.02875 0.85225 0.77019 0.79114 0.78378 1.20707 1.23111 1.19536 1.19389 0.90927 0.83030 1.42595 0.89026 1.43739 1.01591 1.00450 1.85927 1.21608 0.83635 0.90700 0.97063 1.22673 0.98054 0.96694 0.99837 1.21458 0.96448 0.95068 0.81632 1.45421 1.30626 1.48247 1.09185 1.17493 0.80668 0.79870 0.84424 1.90660 1.37834 1.38286 1.80142 1.20172 1.03025 1.10813 0.93877 1.22456 0.98452 0.94965 0.84245 1.41465 1.24348 1.40548 1.10031 0.72014 1.18504 0.91269 0.97659 0.95884 1.20445 0.96503 1.02304 0.94940 1.21229 0.95928 0.95796 0.99270 1.21266 1.00915 1.01589 0.92205 1.20722 0.94327 0.97931 0.98660 1.19082 0.97378 1.00755 0.92597 1.22047 0.96522 0.94127 1.02044 1.22888 0.93862 0.94100 1.03040 1.21860 0.95745 0.96016 1.01077 1.21027 0.94453 0.85256 0.95474 0.96827 0.94755 0.98492 0.95624 0.90648 0.92021 0.76373 0.77933 0.82749 0.82150 0.83952 0.87534 0.92032 0.90498 0.89788 0.90195 0.90793 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.07 10.55 21.65 0.23 -56.84 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.23 -12.04 10.29 84.03 0.86 -11.18 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.59 -29.04 3.16 -668.66 -2.11 -31.15 16 10 C 0.19 10.06 5.33 86.96 0.46 10.52 16 11 C -0.13 -5.79 6.10 31.44 0.19 -5.60 16 12 C 0.14 5.26 0.42 4.32 0.00 5.26 16 13 N -0.69 -24.70 4.47 -423.36 -1.89 -26.59 16 14 C 0.59 22.72 7.19 86.51 0.62 23.34 16 15 O -0.59 -26.32 14.27 -4.26 -0.06 -26.38 16 16 C -0.27 -8.96 6.27 -19.01 -0.12 -9.08 16 17 C 0.13 3.27 11.33 83.70 0.95 4.22 16 18 N -0.56 -11.04 5.99 -187.09 -1.12 -12.16 16 19 H 0.44 4.88 8.96 -92.71 -0.83 4.05 16 20 C 0.07 1.78 7.26 38.91 0.28 2.06 16 21 C -0.12 -2.30 10.07 22.37 0.23 -2.07 16 22 C -0.10 -1.90 10.01 22.28 0.22 -1.68 16 23 C -0.14 -3.29 10.03 22.28 0.22 -3.07 16 24 C -0.10 -3.08 9.85 22.41 0.22 -2.86 16 25 C -0.09 -3.03 6.27 -20.08 -0.13 -3.16 16 26 C -0.11 -3.29 6.24 31.27 0.20 -3.09 16 27 C -0.10 -2.45 6.95 32.99 0.23 -2.22 16 28 C -0.11 -3.21 6.46 30.93 0.20 -3.01 16 29 C 0.15 5.72 2.65 46.46 0.12 5.84 16 30 H 0.01 0.58 7.98 -2.38 -0.02 0.56 16 31 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.00 -0.18 7.98 -2.39 -0.02 -0.20 16 33 H 0.03 1.50 7.05 -2.39 -0.02 1.49 16 34 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.06 2.88 6.27 -2.39 -0.01 2.87 16 36 H 0.40 13.41 6.44 -92.71 -0.60 12.82 16 37 H 0.20 3.79 7.38 -2.91 -0.02 3.77 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.11 3.78 7.45 -2.91 -0.02 3.76 16 42 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 43 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 47 H 0.07 1.97 7.17 -2.39 -0.02 1.95 16 Total: -1.00 -75.90 372.95 1.89 -74.02 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.42 Total: 31.82 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.24 Total: 1.25 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -4.90 Total: -126.74 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -75.90 1.89 -74.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.109 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds