Wall clock time and date at job start Sat Apr 11 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00617 * 2 1 4 4 H 1.48503 * 109.47085 * 270.00057 * 3 2 1 5 5 H 1.48504 * 109.46658 * 29.99568 * 3 2 1 6 6 H 1.48492 * 109.47355 * 149.99706 * 3 2 1 7 7 C 1.38823 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.49407 * 127.09249 * 0.02562 * 9 7 2 11 11 C 1.56232 * 106.45343 * 188.65973 * 10 9 7 12 12 C 1.52127 * 100.84727 * 23.45488 * 11 10 9 13 13 N 1.46497 * 111.08891 * 74.58898 * 12 11 10 14 14 C 1.34775 * 120.00305 * 61.01058 * 13 12 11 15 15 O 1.21578 * 119.99538 * 0.02562 * 14 13 12 16 16 C 1.47655 * 120.00121 * 180.02562 * 14 13 12 17 17 C 1.40202 * 119.97843 * 359.97438 * 16 14 13 18 18 C 1.36311 * 120.67338 * 180.02562 * 17 16 14 19 19 C 1.39369 * 120.23687 * 359.97438 * 18 17 16 20 20 N 1.37401 * 133.24911 * 179.97438 * 19 18 17 21 21 H 0.96999 * 125.01066 * 0.02562 * 20 19 18 22 22 C 1.36868 * 109.97943 * 180.02562 * 20 19 18 23 23 C 1.34193 * 109.95761 * 359.97438 * 22 20 19 24 24 C 1.40867 * 119.63820 * 359.97438 * 19 18 17 25 25 C 1.39154 * 119.97117 * 179.72626 * 16 14 13 26 26 C 1.51225 * 122.12180 * 208.77141 * 12 11 10 27 27 C 1.55693 * 104.60774 * 141.27175 * 26 12 11 28 28 C 1.56286 * 105.93376 * 352.75057 * 27 26 12 29 29 C 1.42707 * 127.10004 * 179.97438 * 9 7 2 30 30 H 1.08999 * 107.79540 * 256.38814 * 29 9 7 31 31 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 32 32 H 1.09004 * 110.08974 * 69.40872 * 10 9 7 33 33 H 1.09007 * 110.06935 * 307.89717 * 10 9 7 34 34 H 1.09002 * 111.15045 * 265.54509 * 11 10 9 35 35 H 1.09000 * 111.15153 * 141.36096 * 11 10 9 36 36 H 0.97000 * 120.00161 * 241.01451 * 13 12 11 37 37 H 1.08005 * 119.66208 * 0.02562 * 17 16 14 38 38 H 1.08005 * 119.88197 * 179.97438 * 18 17 16 39 39 H 1.07996 * 125.01796 * 180.02562 * 22 20 19 40 40 H 1.07997 * 126.54338 * 180.02562 * 23 22 20 41 41 H 1.08002 * 120.30373 * 359.97438 * 25 16 14 42 42 H 1.09005 * 110.40576 * 260.05125 * 26 12 11 43 43 H 1.08994 * 110.41266 * 22.48607 * 26 12 11 44 44 H 1.09002 * 110.15850 * 111.86586 * 27 26 12 45 45 H 1.08999 * 110.16112 * 233.55927 * 27 26 12 46 46 H 1.09001 * 110.96987 * 93.86131 * 28 27 26 47 47 H 1.09005 * 110.96500 * 217.62299 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1572 -2.5725 -0.0005 11 6 -0.4138 -4.0969 0.2256 12 6 0.8795 -4.5058 0.9144 13 7 0.9069 -4.0405 2.3033 14 6 -0.0280 -4.4668 3.1754 15 8 -0.8939 -5.2379 2.8096 16 6 -0.0008 -3.9973 4.5751 17 6 0.9983 -3.1085 4.9965 18 6 1.0372 -2.6665 6.2854 19 6 0.0798 -3.0944 7.2033 20 7 -0.1329 -2.8291 8.5346 21 1 0.4144 -2.2421 9.0794 22 6 -1.2308 -3.5151 8.9786 23 6 -1.7587 -4.2333 7.9755 24 6 -0.9298 -3.9866 6.7920 25 6 -0.9697 -4.4334 5.4736 26 6 1.4454 -5.9033 0.7982 27 6 2.9847 -5.6959 0.6908 28 6 3.2020 -4.1535 0.5639 29 6 1.8806 -3.7028 0.0005 30 1 1.7852 -4.1047 -1.0081 31 1 -0.4850 0.8401 0.0004 32 1 -0.5724 -2.2618 -0.9593 33 1 -0.6066 -1.9941 0.8068 34 1 -0.5366 -4.6200 -0.7228 35 1 -1.2737 -4.2589 0.8754 36 1 1.5979 -3.4255 2.5952 37 1 1.7446 -2.7706 4.2928 38 1 1.8127 -1.9822 6.5964 39 1 -1.6159 -3.4825 9.9870 40 1 -2.6285 -4.8712 8.0296 41 1 -1.7437 -5.1147 5.1522 42 1 1.2016 -6.4871 1.6858 43 1 1.0646 -6.3944 -0.0972 44 1 3.4780 -6.0723 1.5870 45 1 3.3716 -6.2048 -0.1921 46 1 3.3845 -3.7037 1.5399 47 1 4.0162 -3.9297 -0.1255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992152745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:56 Heat of formation + Delta-G solvation = 67.618943 kcal Electronic energy + Delta-G solvation = -30089.465022 eV Core-core repulsion = 26238.629428 eV Total energy + Delta-G solvation = -3850.835594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31623 -40.36720 -38.27087 -36.30141 -34.39809 -32.99628 -32.00672 -31.69364 -30.15976 -29.21496 -28.74462 -26.90519 -25.76368 -24.07270 -23.53810 -22.29609 -21.00639 -20.56197 -20.23826 -19.53602 -18.62475 -18.16437 -17.14426 -16.44104 -16.08592 -15.62816 -14.83959 -14.78532 -14.53466 -14.39718 -14.18393 -13.96347 -13.88478 -13.65690 -13.36050 -13.19137 -12.74904 -12.54121 -12.35785 -12.26640 -11.87229 -11.53341 -11.35595 -11.23123 -10.98432 -10.90962 -10.86751 -10.77351 -10.43430 -10.25034 -9.97401 -9.91700 -9.84336 -9.66087 -9.52510 -9.01415 -8.64193 -8.42821 -8.19641 -7.80681 -6.82903 -5.72091 -3.06585 1.07214 1.30058 2.62282 2.98443 3.29790 3.37994 3.43025 3.45353 3.72263 4.18330 4.46803 4.63288 4.68567 4.73379 5.01677 5.12227 5.24809 5.26499 5.30136 5.44249 5.49865 5.52160 5.63872 5.68316 5.79146 5.86814 5.88853 5.99439 6.03185 6.07574 6.19177 6.31111 6.34619 6.37992 6.41489 6.46529 6.51437 6.56493 6.60089 6.65265 6.75944 6.90028 6.96705 7.05135 7.30671 7.35896 7.56700 7.65168 7.82369 8.17505 8.22812 8.82632 9.15418 9.82247 10.52336 11.39934 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004017 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.282454 B = 6969.240164 C = 8493.906629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.584 5.584 10 C 0.179 3.821 11 C -0.142 4.142 12 C 0.133 3.867 13 N -0.685 5.685 14 C 0.562 3.438 15 O -0.550 6.550 16 C -0.155 4.155 17 C -0.060 4.060 18 C -0.138 4.138 19 C 0.113 3.887 20 N -0.595 5.595 21 H 0.415 0.585 22 C 0.040 3.960 23 C -0.193 4.193 24 C -0.125 4.125 25 C -0.005 4.005 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.115 4.115 29 C 0.158 3.842 30 H 0.023 0.977 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.170 0.830 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -8.944 15.278 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.045 3.955 13 N -0.335 5.335 14 C 0.350 3.650 15 O -0.430 6.430 16 C -0.159 4.159 17 C -0.079 4.079 18 C -0.159 4.159 19 C 0.005 3.995 20 N -0.198 5.198 21 H 0.251 0.749 22 C -0.085 4.085 23 C -0.218 4.218 24 C -0.129 4.129 25 C -0.025 4.025 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.153 4.153 29 C 0.047 3.953 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.363 -9.142 15.072 17.680 hybrid contribution 1.004 1.697 0.406 2.013 sum 2.367 -7.445 15.478 17.337 Atomic orbital electron populations 1.69927 1.04876 1.25063 1.56417 1.24783 0.95573 0.97541 1.02125 0.86197 0.78566 0.83847 0.77580 1.21663 1.21790 1.20740 1.18995 0.90209 0.82330 1.44394 0.90387 1.43688 1.01761 0.99159 1.86104 1.22020 0.83042 0.88769 1.00598 1.22824 0.96921 0.99236 0.99121 1.21517 0.98872 0.93638 0.81487 1.45549 1.30608 1.47791 1.09513 1.18033 0.81434 0.80730 0.84810 1.90698 1.36820 1.36315 1.79169 1.19761 0.98920 1.02877 0.94372 1.20739 0.97285 0.94915 0.95007 1.19643 0.99571 1.04165 0.92495 1.18420 0.97807 0.98810 0.84496 1.41764 1.26974 1.42464 1.08607 0.74862 1.21782 0.89909 0.97202 0.99629 1.21742 1.02752 1.06021 0.91283 1.19143 0.97811 1.01706 0.94254 1.20647 0.96171 0.95789 0.89847 1.21904 0.94935 0.96330 1.01936 1.22819 0.95803 0.95871 1.00982 1.21851 0.97954 0.94555 1.00983 1.20860 0.91590 0.87513 0.95301 0.95992 0.93719 0.94820 0.91745 0.91868 0.90408 0.76450 0.85126 0.85863 0.81317 0.83454 0.84631 0.91651 0.91148 0.92235 0.91965 0.91779 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.55 55.49 0.59 -25.94 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.12 10.29 -15.05 -0.15 -6.28 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.58 -14.21 3.18 -162.52 -0.52 -14.73 16 10 C 0.18 4.41 5.35 -0.69 0.00 4.40 16 11 C -0.14 -2.95 6.09 -25.44 -0.15 -3.10 16 12 C 0.13 2.48 0.42 -130.68 -0.05 2.42 16 13 N -0.68 -12.47 4.47 -47.54 -0.21 -12.68 16 14 C 0.56 10.47 7.15 -12.42 -0.09 10.38 16 15 O -0.55 -11.47 14.46 5.30 0.08 -11.40 16 16 C -0.16 -2.54 5.87 -104.97 -0.62 -3.15 16 17 C -0.06 -0.86 9.46 -39.54 -0.37 -1.24 16 18 C -0.14 -1.75 10.00 -39.85 -0.40 -2.15 16 19 C 0.11 1.42 7.27 -83.95 -0.61 0.81 16 20 N -0.60 -5.43 6.05 -10.61 -0.06 -5.49 16 21 H 0.41 2.45 8.96 -40.82 -0.37 2.09 16 22 C 0.04 0.34 11.81 -16.73 -0.20 0.14 16 23 C -0.19 -2.08 11.09 -37.65 -0.42 -2.50 16 24 C -0.12 -1.71 6.36 -105.16 -0.67 -2.38 16 25 C 0.00 -0.08 9.64 -38.86 -0.37 -0.45 16 26 C -0.11 -1.79 6.16 -26.19 -0.16 -1.95 16 27 C -0.12 -1.64 6.94 -23.53 -0.16 -1.80 16 28 C -0.11 -1.89 6.47 -26.19 -0.17 -2.06 16 29 C 0.16 3.16 2.67 -68.66 -0.18 2.98 16 30 H 0.02 0.47 7.98 -51.93 -0.41 0.06 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.03 0.90 7.99 -51.93 -0.41 0.49 16 33 H 0.06 1.78 7.05 -51.92 -0.37 1.41 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.69 6.27 -51.93 -0.33 1.37 16 36 H 0.40 7.07 5.61 -40.82 -0.23 6.84 16 37 H 0.13 1.79 6.36 -52.48 -0.33 1.46 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.14 2.06 7.64 -52.49 -0.40 1.66 16 42 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.05 7.20 -51.93 -0.37 0.67 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -32.56 371.93 -10.99 -43.55 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.55 Total: 10.62 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.89 Total: -6.11 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.21 Total: -58.84 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.56 -10.99 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992152745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.172 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds