Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00617 * 2 1 4 4 H 1.48503 * 109.47085 * 270.00057 * 3 2 1 5 5 H 1.48504 * 109.46658 * 29.99568 * 3 2 1 6 6 H 1.48492 * 109.47355 * 149.99706 * 3 2 1 7 7 C 1.38823 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.49407 * 127.09249 * 0.02562 * 9 7 2 11 11 C 1.56232 * 106.45343 * 188.65973 * 10 9 7 12 12 C 1.52127 * 100.84727 * 23.45488 * 11 10 9 13 13 N 1.46497 * 111.08891 * 74.58898 * 12 11 10 14 14 C 1.34775 * 120.00305 * 61.01058 * 13 12 11 15 15 O 1.21578 * 119.99538 * 0.02562 * 14 13 12 16 16 C 1.47655 * 120.00121 * 180.02562 * 14 13 12 17 17 C 1.40202 * 119.97843 * 359.97438 * 16 14 13 18 18 C 1.36311 * 120.67338 * 180.02562 * 17 16 14 19 19 C 1.39369 * 120.23687 * 359.97438 * 18 17 16 20 20 N 1.37401 * 133.24911 * 179.97438 * 19 18 17 21 21 H 0.96999 * 125.01066 * 0.02562 * 20 19 18 22 22 C 1.36868 * 109.97943 * 180.02562 * 20 19 18 23 23 C 1.34193 * 109.95761 * 359.97438 * 22 20 19 24 24 C 1.40867 * 119.63820 * 359.97438 * 19 18 17 25 25 C 1.39154 * 119.97117 * 179.72626 * 16 14 13 26 26 C 1.51225 * 122.12180 * 208.77141 * 12 11 10 27 27 C 1.55693 * 104.60774 * 141.27175 * 26 12 11 28 28 C 1.56286 * 105.93376 * 352.75057 * 27 26 12 29 29 C 1.42707 * 127.10004 * 179.97438 * 9 7 2 30 30 H 1.08999 * 107.79540 * 256.38814 * 29 9 7 31 31 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 32 32 H 1.09004 * 110.08974 * 69.40872 * 10 9 7 33 33 H 1.09007 * 110.06935 * 307.89717 * 10 9 7 34 34 H 1.09002 * 111.15045 * 265.54509 * 11 10 9 35 35 H 1.09000 * 111.15153 * 141.36096 * 11 10 9 36 36 H 0.97000 * 120.00161 * 241.01451 * 13 12 11 37 37 H 1.08005 * 119.66208 * 0.02562 * 17 16 14 38 38 H 1.08005 * 119.88197 * 179.97438 * 18 17 16 39 39 H 1.07996 * 125.01796 * 180.02562 * 22 20 19 40 40 H 1.07997 * 126.54338 * 180.02562 * 23 22 20 41 41 H 1.08002 * 120.30373 * 359.97438 * 25 16 14 42 42 H 1.09005 * 110.40576 * 260.05125 * 26 12 11 43 43 H 1.08994 * 110.41266 * 22.48607 * 26 12 11 44 44 H 1.09002 * 110.15850 * 111.86586 * 27 26 12 45 45 H 1.08999 * 110.16112 * 233.55927 * 27 26 12 46 46 H 1.09001 * 110.96987 * 93.86131 * 28 27 26 47 47 H 1.09005 * 110.96500 * 217.62299 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1572 -2.5725 -0.0005 11 6 -0.4138 -4.0969 0.2256 12 6 0.8795 -4.5058 0.9144 13 7 0.9069 -4.0405 2.3033 14 6 -0.0280 -4.4668 3.1754 15 8 -0.8939 -5.2379 2.8096 16 6 -0.0008 -3.9973 4.5751 17 6 0.9983 -3.1085 4.9965 18 6 1.0372 -2.6665 6.2854 19 6 0.0798 -3.0944 7.2033 20 7 -0.1329 -2.8291 8.5346 21 1 0.4144 -2.2421 9.0794 22 6 -1.2308 -3.5151 8.9786 23 6 -1.7587 -4.2333 7.9755 24 6 -0.9298 -3.9866 6.7920 25 6 -0.9697 -4.4334 5.4736 26 6 1.4454 -5.9033 0.7982 27 6 2.9847 -5.6959 0.6908 28 6 3.2020 -4.1535 0.5639 29 6 1.8806 -3.7028 0.0005 30 1 1.7852 -4.1047 -1.0081 31 1 -0.4850 0.8401 0.0004 32 1 -0.5724 -2.2618 -0.9593 33 1 -0.6066 -1.9941 0.8068 34 1 -0.5366 -4.6200 -0.7228 35 1 -1.2737 -4.2589 0.8754 36 1 1.5979 -3.4255 2.5952 37 1 1.7446 -2.7706 4.2928 38 1 1.8127 -1.9822 6.5964 39 1 -1.6159 -3.4825 9.9870 40 1 -2.6285 -4.8712 8.0296 41 1 -1.7437 -5.1147 5.1522 42 1 1.2016 -6.4871 1.6858 43 1 1.0646 -6.3944 -0.0972 44 1 3.4780 -6.0723 1.5870 45 1 3.3716 -6.2048 -0.1921 46 1 3.3845 -3.7037 1.5399 47 1 4.0162 -3.9297 -0.1255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992152745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 48.062565 kcal Electronic energy + Delta-G solvation = -30090.313051 eV Core-core repulsion = 26238.629428 eV Total energy + Delta-G solvation = -3851.683622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28824 -41.82430 -39.68601 -37.43892 -36.15966 -34.43375 -33.59071 -32.95392 -31.76607 -30.40927 -29.69632 -28.53013 -27.30566 -25.93976 -24.77984 -23.32652 -22.28862 -21.88004 -21.43364 -21.15773 -20.11097 -19.12812 -18.42048 -18.28093 -17.41936 -16.91704 -16.43900 -16.20747 -15.99044 -15.69779 -15.56832 -15.42515 -14.96936 -14.90061 -14.79479 -14.16065 -14.05192 -14.00942 -13.68993 -13.54495 -13.36203 -13.01473 -12.97879 -12.83907 -12.65498 -12.46960 -12.13420 -12.10271 -12.01649 -11.89686 -11.76051 -11.53591 -11.33346 -11.10339 -10.79988 -10.71342 -10.57883 -9.90137 -9.23213 -8.85058 -8.72554 -7.81206 -5.17166 -0.02790 0.26935 1.47849 1.49320 1.57692 1.80978 2.00907 2.21966 2.32829 2.52102 2.98946 3.11420 3.38684 3.68885 3.75970 3.87908 3.91449 3.95228 4.12273 4.18537 4.30567 4.31950 4.40637 4.42385 4.44437 4.59879 4.63456 4.71081 4.74398 4.83182 4.96275 4.97126 5.00208 5.07454 5.10192 5.13812 5.25551 5.30200 5.35415 5.43031 5.51302 5.57858 5.60997 5.63469 5.70056 5.73805 5.84823 6.09193 6.19764 6.69754 6.71932 7.05784 7.37105 7.79056 8.52670 9.30797 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004017 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.282454 B = 6969.240164 C = 8493.906629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.231 4.231 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.133 4.133 12 C 0.138 3.862 13 N -0.683 5.683 14 C 0.559 3.441 15 O -0.582 6.582 16 C -0.178 4.178 17 C -0.076 4.076 18 C -0.129 4.129 19 C 0.103 3.897 20 N -0.581 5.581 21 H 0.433 0.567 22 C 0.070 3.930 23 C -0.225 4.225 24 C -0.144 4.144 25 C -0.020 4.020 26 C -0.108 4.108 27 C -0.101 4.101 28 C -0.110 4.110 29 C 0.146 3.854 30 H 0.019 0.981 31 H 0.244 0.756 32 H -0.001 1.001 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.219 0.781 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -9.366 17.967 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.359 4.359 8 H 0.109 0.891 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.172 4.172 12 C 0.050 3.950 13 N -0.333 5.333 14 C 0.348 3.652 15 O -0.464 6.464 16 C -0.182 4.182 17 C -0.096 4.096 18 C -0.149 4.149 19 C -0.007 4.007 20 N -0.185 5.185 21 H 0.274 0.726 22 C -0.056 4.056 23 C -0.249 4.249 24 C -0.149 4.149 25 C -0.040 4.040 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.148 4.148 29 C 0.037 3.963 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.142 0.858 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.744 -9.580 17.785 20.545 hybrid contribution 0.209 1.825 -0.320 1.865 sum 3.953 -7.754 17.465 19.513 Atomic orbital electron populations 1.70165 1.06523 1.25027 1.58398 1.25589 0.96284 1.00881 1.02868 0.85152 0.77897 0.79521 0.77215 1.21877 1.22810 1.18653 1.19421 0.90912 0.83111 1.42487 0.89144 1.43800 1.01680 1.00472 1.85963 1.21653 0.83549 0.90759 0.97176 1.22672 0.97868 0.96640 0.99973 1.21523 0.96718 0.95353 0.81411 1.45539 1.30679 1.47787 1.09260 1.18443 0.80764 0.80151 0.85819 1.90659 1.37914 1.37855 1.79965 1.19667 1.00643 1.04699 0.93195 1.20762 0.97266 0.95448 0.96166 1.19901 0.99863 1.03518 0.91655 1.18530 0.97424 0.98627 0.86071 1.41862 1.27134 1.42092 1.07368 0.72647 1.22527 0.88027 0.94186 1.00848 1.22051 1.03902 1.08092 0.90844 1.19492 0.99115 1.02021 0.94307 1.20644 0.96011 0.96316 0.91011 1.21907 0.96454 0.94081 1.02275 1.22753 0.94048 0.93990 1.03152 1.21873 0.95880 0.96180 1.00901 1.21094 0.94360 0.85270 0.95540 0.96384 0.94723 0.98250 0.95656 0.90332 0.91870 0.76201 0.85019 0.83005 0.76485 0.82157 0.85836 0.92063 0.90095 0.90222 0.89608 0.91699 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 10.55 21.65 0.23 -57.55 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 3 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.23 -12.33 10.29 84.04 0.86 -11.47 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.60 -29.73 3.18 -668.08 -2.12 -31.86 16 10 C 0.19 10.07 5.35 86.94 0.47 10.54 16 11 C -0.13 -5.74 6.09 31.43 0.19 -5.55 16 12 C 0.14 5.19 0.42 4.35 0.00 5.19 16 13 N -0.68 -25.58 4.47 -422.58 -1.89 -27.47 16 14 C 0.56 21.87 7.15 86.73 0.62 22.49 16 15 O -0.58 -25.63 14.46 -3.96 -0.06 -25.69 16 16 C -0.18 -6.10 5.87 -20.09 -0.12 -6.22 16 17 C -0.08 -2.24 9.46 22.30 0.21 -2.03 16 18 C -0.13 -3.10 10.00 22.09 0.22 -2.88 16 19 C 0.10 2.42 7.27 39.19 0.28 2.70 16 20 N -0.58 -8.51 6.05 -187.48 -1.13 -9.64 16 21 H 0.43 3.25 8.96 -92.71 -0.83 2.42 16 22 C 0.07 0.90 11.81 82.98 0.98 1.88 16 23 C -0.22 -4.43 11.09 23.52 0.26 -4.17 16 24 C -0.14 -3.92 6.36 -20.21 -0.13 -4.05 16 25 C -0.02 -0.65 9.64 22.74 0.22 -0.43 16 26 C -0.11 -3.31 6.16 30.94 0.19 -3.11 16 27 C -0.10 -2.54 6.94 32.67 0.23 -2.31 16 28 C -0.11 -3.39 6.47 30.94 0.20 -3.19 16 29 C 0.15 5.82 2.67 46.51 0.12 5.95 16 30 H 0.02 0.77 7.98 -2.39 -0.02 0.75 16 31 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.00 -0.04 7.99 -2.39 -0.02 -0.06 16 33 H 0.03 1.50 7.05 -2.38 -0.02 1.48 16 34 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.06 2.92 6.27 -2.39 -0.01 2.91 16 36 H 0.40 14.54 5.61 -92.71 -0.52 14.02 16 37 H 0.13 3.69 6.36 -2.91 -0.02 3.67 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.12 4.11 7.64 -2.91 -0.02 4.09 16 42 H 0.06 1.95 7.73 -2.38 -0.02 1.93 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.99 7.20 -2.39 -0.02 1.98 16 47 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -75.37 371.93 1.99 -73.37 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.34 Total: 31.55 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.28 Total: 0.27 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -4.92 Total: -126.52 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.37 1.99 -73.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992152745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.437 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds