Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47163 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47223 * 60.00535 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21597 * 119.99860 * 359.97438 * 14 13 12 16 16 C 1.47510 * 120.00334 * 180.02562 * 14 13 12 17 17 C 1.39345 * 120.20320 * 359.97438 * 16 14 13 18 18 C 1.38325 * 120.49264 * 179.97438 * 17 16 14 19 19 C 1.37903 * 120.59394 * 0.02562 * 18 17 16 20 20 C 1.39540 * 119.98981 * 359.97438 * 19 18 17 21 21 C 1.46572 * 133.95608 * 179.97438 * 20 19 18 22 22 C 1.34212 * 106.89457 * 180.02562 * 21 20 19 23 23 N 1.36902 * 109.88111 * 0.02562 * 22 21 20 24 24 H 0.96993 * 125.01741 * 180.02562 * 23 22 21 25 25 C 1.37129 * 109.97146 * 359.71354 * 23 22 21 26 26 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 27 27 C 1.54402 * 106.75093 * 247.06032 * 26 12 11 28 28 C 1.54761 * 104.07426 * 24.70175 * 27 26 12 29 29 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 30 30 H 1.08998 * 111.81485 * 301.92107 * 29 9 7 31 31 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 33 33 H 1.09004 * 110.36777 * 85.72700 * 10 9 7 34 34 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 35 35 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 36 36 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 37 37 H 1.07995 * 119.75899 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.70120 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.00549 * 180.02562 * 19 18 17 40 40 H 1.08001 * 126.55266 * 0.02562 * 21 20 19 41 41 H 1.07992 * 125.05912 * 180.02562 * 22 21 20 42 42 H 1.08994 * 110.01917 * 6.22401 * 26 12 11 43 43 H 1.09000 * 110.01627 * 127.57375 * 26 12 11 44 44 H 1.09003 * 110.41899 * 266.11438 * 27 26 12 45 45 H 1.09004 * 110.64966 * 143.39971 * 27 26 12 46 46 H 1.09002 * 110.67220 * 203.89107 * 28 27 26 47 47 H 1.09001 * 110.66738 * 80.92326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1541 -6.5812 -0.4235 16 6 -0.8289 -6.7930 -2.7251 17 6 -0.1048 -6.3899 -3.8453 18 6 -0.3889 -6.9177 -5.0919 19 6 -1.3927 -7.8504 -5.2471 20 6 -2.1320 -8.2701 -4.1405 21 6 -3.2355 -9.2165 -3.9537 22 6 -3.5423 -9.2050 -2.6472 23 7 -2.7255 -8.3283 -1.9849 24 1 -2.7577 -8.1489 -1.0322 25 6 -1.8505 -7.7466 -2.8659 26 6 1.1755 -5.8269 1.0725 27 6 2.5895 -5.4575 1.5707 28 6 2.6838 -3.9305 1.3371 29 6 1.9331 -3.7264 -0.0016 30 1 2.5871 -3.8736 -0.8611 31 1 -0.4850 0.8401 0.0004 32 1 -0.5987 -1.7507 0.6071 33 1 -0.5262 -2.4924 -1.0196 34 1 -0.3541 -3.8788 1.7122 35 1 -1.3619 -4.3249 0.2954 36 1 0.9711 -5.0335 -2.0451 37 1 0.6846 -5.6606 -3.7394 38 1 0.1807 -6.5965 -5.9515 39 1 -1.6062 -8.2566 -6.2248 40 1 -3.7108 -9.8098 -4.7208 41 1 -4.3180 -9.7988 -2.1869 42 1 0.4765 -5.8272 1.9087 43 1 1.1895 -6.8080 0.5977 44 1 3.3471 -5.9804 0.9870 45 1 2.6962 -5.6887 2.6306 46 1 3.7243 -3.6188 1.2460 47 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992213820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 52.012203 kcal Electronic energy + Delta-G solvation = -29925.640716 eV Core-core repulsion = 26074.128363 eV Total energy + Delta-G solvation = -3851.512353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43720 -40.05888 -38.10093 -36.79278 -34.26155 -33.48224 -32.09980 -31.37442 -29.92092 -29.46136 -28.75005 -26.72598 -26.05415 -23.93976 -23.79420 -21.86303 -21.52027 -20.79204 -19.99008 -19.62638 -18.83745 -17.89812 -17.01822 -16.98787 -16.19768 -15.74092 -15.06823 -14.98269 -14.85901 -14.38126 -14.27839 -13.95615 -13.86603 -13.51375 -13.31937 -13.12708 -12.84997 -12.67521 -12.19784 -11.92244 -11.84841 -11.70737 -11.62147 -11.50534 -11.15374 -10.99415 -10.85801 -10.67330 -10.53180 -10.15451 -10.07178 -9.97221 -9.83004 -9.77199 -9.63020 -9.40227 -8.67111 -8.58410 -8.34681 -7.84107 -6.86341 -5.65470 -3.08765 0.65625 1.54265 2.45131 3.14272 3.14543 3.37742 3.39783 3.44253 3.46430 3.93718 4.46340 4.56888 4.68329 4.85500 4.88908 4.99829 5.14740 5.16138 5.27347 5.33432 5.41970 5.51236 5.64362 5.68776 5.77637 5.78202 5.84565 5.86016 5.99525 6.07625 6.13605 6.19934 6.24890 6.35559 6.40582 6.41545 6.52796 6.54943 6.59223 6.61842 6.76739 6.78599 6.97646 7.01971 7.11774 7.49040 7.54143 7.64157 7.80013 7.87531 8.35641 8.45633 9.20496 9.81542 10.45619 11.37062 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.003165 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.257566 B = 8844.743577 C = 9533.240407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.162 3.838 13 N -0.697 5.697 14 C 0.563 3.437 15 O -0.552 6.552 16 C -0.145 4.145 17 C -0.059 4.059 18 C -0.158 4.158 19 C -0.046 4.046 20 C -0.124 4.124 21 C -0.207 4.207 22 C 0.049 3.951 23 N -0.578 5.578 24 H 0.427 0.573 25 C 0.151 3.849 26 C -0.108 4.108 27 C -0.125 4.125 28 C -0.129 4.129 29 C 0.161 3.839 30 H 0.047 0.953 31 H 0.251 0.749 32 H 0.108 0.892 33 H 0.009 0.991 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.147 0.853 41 H 0.171 0.829 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 -18.449 -6.779 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.180 4.180 12 C 0.076 3.924 13 N -0.346 5.346 14 C 0.351 3.649 15 O -0.433 6.433 16 C -0.151 4.151 17 C -0.079 4.079 18 C -0.177 4.177 19 C -0.065 4.065 20 C -0.129 4.129 21 C -0.232 4.232 22 C -0.078 4.078 23 N -0.181 5.181 24 H 0.267 0.733 25 C 0.039 3.961 26 C -0.147 4.147 27 C -0.163 4.163 28 C -0.170 4.170 29 C 0.053 3.947 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.235 0.765 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.134 -18.414 -5.926 19.597 hybrid contribution 0.635 1.097 -0.086 1.270 sum -2.499 -17.318 -6.013 18.501 Atomic orbital electron populations 1.69815 1.04877 1.24594 1.57503 1.24787 0.95672 0.97683 1.02451 0.86027 0.78641 0.83764 0.77223 1.20552 1.21831 1.21801 1.19080 0.90464 0.82277 1.43004 0.90448 1.44536 1.01789 0.99186 1.86447 1.21966 0.84380 0.92923 0.97979 1.23319 0.96628 0.98083 0.99971 1.21636 0.96826 0.92341 0.81616 1.45792 1.35822 1.42076 1.10881 1.18077 0.79868 0.79039 0.87905 1.90654 1.51035 1.61665 1.39896 1.19032 1.00033 1.01723 0.94299 1.21108 0.97545 0.97668 0.91571 1.20800 0.99965 0.99717 0.97213 1.20676 0.93457 0.95191 0.97175 1.19218 0.99923 1.01332 0.92380 1.21661 1.01161 1.04622 0.95757 1.21928 0.97106 0.95843 0.92917 1.42000 1.28909 1.36050 1.11147 0.73265 1.17950 0.92706 0.95761 0.89660 1.22267 0.96683 0.97618 0.98177 1.22399 0.96375 0.97368 1.00154 1.22960 1.00393 0.93920 0.99683 1.21810 0.91601 0.85901 0.95413 0.93572 0.93812 0.87473 0.97276 0.91405 0.91685 0.76514 0.85228 0.85328 0.85695 0.83522 0.81214 0.91229 0.92346 0.92369 0.92222 0.92359 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.07 55.49 0.56 -25.97 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -5.89 10.01 -15.06 -0.15 -6.04 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.54 3.03 -161.11 -0.49 -15.03 16 10 C 0.15 3.72 5.90 -2.59 -0.02 3.70 16 11 C -0.14 -2.89 5.75 -24.74 -0.14 -3.04 16 12 C 0.16 2.92 0.74 -129.37 -0.10 2.82 16 13 N -0.70 -11.31 5.20 -46.39 -0.24 -11.55 16 14 C 0.56 9.24 6.93 -12.48 -0.09 9.15 16 15 O -0.55 -10.01 13.04 5.28 0.07 -9.94 16 16 C -0.15 -2.10 5.88 -104.87 -0.62 -2.72 16 17 C -0.06 -0.72 9.52 -39.14 -0.37 -1.09 16 18 C -0.16 -1.66 10.00 -39.67 -0.40 -2.06 16 19 C -0.05 -0.49 10.09 -39.22 -0.40 -0.89 16 20 C -0.12 -1.53 6.37 -105.15 -0.67 -2.20 16 21 C -0.21 -2.10 11.09 -37.64 -0.42 -2.52 16 22 C 0.05 0.47 11.82 -16.71 -0.20 0.27 16 23 N -0.58 -7.15 5.87 -10.45 -0.06 -7.21 16 24 H 0.43 5.28 7.54 -40.82 -0.31 4.97 16 25 C 0.15 2.11 6.87 -83.76 -0.58 1.54 16 26 C -0.11 -1.77 5.23 -25.69 -0.13 -1.91 16 27 C -0.12 -1.87 6.85 -25.07 -0.17 -2.04 16 28 C -0.13 -2.33 6.20 -24.84 -0.15 -2.48 16 29 C 0.16 3.19 3.65 -65.57 -0.24 2.95 16 30 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.11 2.97 5.83 -51.93 -0.30 2.67 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.39 7.62 -51.93 -0.40 0.99 16 35 H 0.06 1.36 6.82 -51.93 -0.35 1.01 16 36 H 0.40 5.82 6.54 -40.82 -0.27 5.56 16 37 H 0.13 1.37 6.37 -52.49 -0.33 1.03 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 43 H 0.06 0.95 7.43 -51.93 -0.39 0.56 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -31.57 369.06 -11.05 -42.62 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.49 Total: 11.71 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.93 Total: -6.92 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.23 Total: -59.77 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.57 -11.05 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992213820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.629 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds