Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47546 * 270.00825 * 3 2 1 5 5 H 1.48504 * 109.46586 * 30.00781 * 3 2 1 6 6 H 1.48498 * 109.47392 * 150.00382 * 3 2 1 7 7 C 1.38817 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99754 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99814 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45852 * 155.00267 * 10 9 7 12 12 C 1.53189 * 109.30967 * 181.38718 * 11 10 9 13 13 N 1.46927 * 108.77511 * 305.36073 * 12 11 10 14 14 C 1.34776 * 120.63132 * 233.58665 * 13 12 11 15 15 O 1.21285 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00131 * 180.02562 * 14 13 12 17 17 C 1.50702 * 109.47160 * 180.02562 * 16 14 13 18 18 C 1.36214 * 120.66184 * 264.99818 * 17 16 14 19 19 N 1.32572 * 121.87374 * 180.23643 * 18 17 16 20 20 C 1.31259 * 122.77954 * 359.45676 * 19 18 17 21 21 C 1.40401 * 119.87776 * 0.52759 * 20 19 18 22 22 C 1.40385 * 122.07398 * 179.70767 * 21 20 19 23 23 C 1.36168 * 119.51200 * 180.02562 * 22 21 20 24 24 C 1.39388 * 121.09018 * 359.97438 * 23 22 21 25 25 C 1.36211 * 121.02308 * 0.02562 * 24 23 22 26 26 C 1.40232 * 119.48152 * 359.97438 * 25 24 23 27 27 C 1.46920 * 118.73751 * 53.86534 * 13 12 11 28 28 C 1.53037 * 109.45918 * 275.06809 * 10 9 7 29 29 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00485 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.45916 * 35.02491 * 10 9 7 32 32 H 1.08996 * 109.49805 * 61.43321 * 11 10 9 33 33 H 1.09006 * 109.52199 * 301.35087 * 11 10 9 34 34 H 1.09001 * 109.58405 * 185.57634 * 12 11 10 35 35 H 1.09003 * 109.70894 * 65.22242 * 12 11 10 36 36 H 1.08998 * 109.47275 * 59.99862 * 16 14 13 37 37 H 1.09005 * 109.46693 * 299.99455 * 16 14 13 38 38 H 1.08002 * 119.05898 * 359.94895 * 18 17 16 39 39 H 1.08002 * 120.06389 * 180.25972 * 20 19 18 40 40 H 1.07999 * 120.24568 * 0.02562 * 22 21 20 41 41 H 1.07992 * 119.45431 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.48399 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.25984 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58854 * 65.92448 * 27 13 12 45 45 H 1.09003 * 109.58996 * 186.35321 * 27 13 12 46 46 H 1.08999 * 109.50043 * 298.56470 * 28 10 9 47 47 H 1.08998 * 109.49911 * 58.62895 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0694 0.6393 13 7 2.4413 -6.3659 -0.7175 14 6 2.1734 -7.5532 -1.2963 15 8 1.5312 -8.3891 -0.6965 16 6 2.6727 -7.8425 -2.6885 17 6 2.2406 -9.2265 -3.0996 18 6 3.0732 -10.2918 -2.9345 19 7 2.7196 -11.5186 -3.2919 20 6 1.5489 -11.7964 -3.8164 21 6 0.6161 -10.7687 -4.0290 22 6 -0.6464 -11.0127 -4.5921 23 6 -1.5107 -9.9766 -4.7756 24 6 -1.1630 -8.6764 -4.4129 25 6 0.0531 -8.4022 -3.8640 26 6 0.9691 -9.4442 -3.6601 27 6 3.2237 -5.3459 -1.4288 28 6 2.4233 -4.0346 -1.4379 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.9684 -3.5505 0.5893 32 1 0.2813 -4.8763 0.0055 33 1 0.9007 -4.4718 1.6248 34 1 1.3096 -6.8735 0.9802 35 1 2.8120 -5.9771 1.3153 36 1 3.7608 -7.7815 -2.7042 37 1 2.2576 -7.1115 -3.3825 38 1 4.0509 -10.1318 -2.5045 39 1 1.3051 -12.8129 -4.0878 40 1 -0.9303 -12.0149 -4.8777 41 1 -2.4816 -10.1653 -5.2092 42 1 -1.8684 -7.8740 -4.5704 43 1 0.3095 -7.3902 -3.5872 44 1 4.1748 -5.1932 -0.9186 45 1 3.4044 -5.6723 -2.4530 46 1 1.5126 -4.1655 -2.0223 47 1 3.0284 -3.2429 -1.8795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996685815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 8.527241 kcal Electronic energy + Delta-G solvation = -28790.546704 eV Core-core repulsion = 24937.148702 eV Total energy + Delta-G solvation = -3853.398002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05134 -40.99408 -38.76414 -38.23085 -36.13955 -35.21315 -33.83634 -32.33353 -32.08186 -31.26011 -30.90830 -28.92873 -26.50851 -25.00198 -24.52633 -24.39886 -24.03141 -22.53242 -21.49905 -20.01415 -19.05251 -18.90944 -18.55232 -18.27814 -17.36808 -16.82315 -16.69240 -16.37955 -15.75387 -15.50286 -15.45645 -15.32555 -15.21713 -14.94186 -14.78267 -14.58734 -14.42600 -14.17659 -13.86202 -13.58661 -13.29957 -13.12782 -13.08185 -12.93801 -12.83656 -12.66604 -12.61885 -12.20634 -12.15347 -12.01392 -11.94860 -11.69644 -11.31032 -11.20148 -10.92470 -10.70276 -10.45727 -10.02206 -9.67904 -9.00544 -8.97519 -7.93004 -5.21582 -0.60319 -0.04798 0.93560 1.48671 1.49638 1.57800 1.58691 1.97518 2.16853 2.57125 3.09093 3.36766 3.40748 3.58101 3.61150 3.76278 3.78558 3.82321 3.91057 3.97460 4.06407 4.09189 4.19047 4.21730 4.31825 4.35721 4.37520 4.41719 4.55707 4.63230 4.66560 4.79339 4.80971 4.83360 4.86228 4.94695 5.03009 5.07527 5.10455 5.14523 5.30881 5.46516 5.50090 5.51197 5.54800 5.63073 5.67857 5.92809 6.28710 6.41028 6.99425 7.13912 7.34772 8.10807 8.33393 9.30766 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.002400 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.583055 B =11663.677512 C =12382.454072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.581 6.581 16 C -0.094 4.094 17 C -0.109 4.109 18 C 0.072 3.928 19 N -0.511 5.511 20 C 0.140 3.860 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.125 4.125 24 C -0.100 4.100 25 C -0.133 4.133 26 C -0.030 4.030 27 C 0.112 3.888 28 C -0.141 4.141 29 H 0.249 0.751 30 H 0.369 0.631 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.194 0.806 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.046 0.954 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -23.020 -11.335 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.166 4.166 12 C 0.000 4.000 13 N -0.338 5.338 14 C 0.306 3.694 15 O -0.461 6.461 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.071 4.071 19 N -0.219 5.219 20 C -0.031 4.031 21 C -0.134 4.134 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.035 4.035 27 C -0.010 4.010 28 C -0.182 4.182 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.181 0.819 39 H 0.210 0.790 40 H 0.183 0.817 41 H 0.173 0.827 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.065 0.935 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.574 -23.894 -10.798 26.617 hybrid contribution -0.976 2.225 0.217 2.439 sum 3.599 -21.669 -10.582 24.382 Atomic orbital electron populations 1.69825 1.06712 1.25884 1.59976 1.25550 0.96286 1.01094 1.04184 0.85181 0.77756 0.79721 0.77372 1.21460 1.22754 1.19244 1.19629 0.91505 0.85015 1.40290 0.90196 1.42678 1.05368 1.01102 1.88659 1.20421 0.94187 0.84485 0.94419 1.22045 0.98548 0.94682 1.01304 1.21469 0.98952 0.96105 0.83449 1.48238 1.53835 1.15118 1.16659 1.20904 0.79048 0.80951 0.88516 1.90693 1.41914 1.47319 1.66182 1.20684 1.05139 0.94446 0.93070 1.20189 0.94367 0.96558 1.00041 1.22276 1.00514 0.87194 0.97080 1.67434 1.19765 1.22837 1.11838 1.23710 0.87458 0.99873 0.92009 1.19333 0.97766 0.93712 1.02563 1.21374 0.91189 1.01343 0.96545 1.21306 1.01140 0.92103 0.99772 1.21353 0.96129 0.98427 0.96030 1.21078 0.94802 0.98556 1.00613 1.18271 0.94197 0.94126 0.96938 1.22070 0.94034 0.86220 0.98675 1.22528 0.99914 0.96767 0.98987 0.94223 0.79940 0.93245 0.93351 0.91282 0.90393 0.89812 0.84251 0.86146 0.81896 0.78951 0.81661 0.82695 0.84069 0.85807 0.89226 0.86961 0.93488 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.23 -12.33 9.93 84.04 0.83 -11.49 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -35.68 5.12 -322.81 -1.65 -37.33 16 10 C 0.17 6.23 2.73 45.02 0.12 6.36 16 11 C -0.13 -4.08 5.55 30.67 0.17 -3.91 16 12 C 0.12 3.33 6.43 86.36 0.56 3.89 16 13 N -0.61 -14.77 2.97 -818.06 -2.43 -17.19 16 14 C 0.52 13.33 7.69 87.66 0.67 14.01 16 15 O -0.58 -20.05 15.45 -3.05 -0.05 -20.10 16 16 C -0.09 -1.72 3.65 29.10 0.11 -1.61 16 17 C -0.11 -2.48 4.40 -19.75 -0.09 -2.57 16 18 C 0.07 1.63 10.72 84.11 0.90 2.54 16 19 N -0.51 -12.02 10.30 -195.54 -2.01 -14.03 16 20 C 0.14 2.71 11.05 85.31 0.94 3.65 16 21 C -0.13 -2.71 5.74 -21.31 -0.12 -2.84 16 22 C -0.09 -1.26 9.81 22.31 0.22 -1.04 16 23 C -0.13 -1.84 9.94 22.06 0.22 -1.62 16 24 C -0.10 -1.84 9.95 22.07 0.22 -1.62 16 25 C -0.13 -2.96 9.33 22.28 0.21 -2.75 16 26 C -0.03 -0.72 5.75 -21.29 -0.12 -0.84 16 27 C 0.11 2.28 6.37 86.51 0.55 2.83 16 28 C -0.14 -4.19 5.67 30.82 0.17 -4.02 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.37 19.68 7.80 -92.71 -0.72 18.96 16 31 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 34 H 0.08 2.30 7.01 -2.39 -0.02 2.28 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.14 1.62 7.85 -2.39 -0.02 1.60 16 37 H 0.12 1.87 6.39 -2.38 -0.02 1.86 16 38 H 0.16 2.96 8.05 -2.91 -0.02 2.93 16 39 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.12 2.70 6.65 -2.91 -0.02 2.68 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.11 1.56 5.93 -2.39 -0.01 1.55 16 46 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -75.34 382.96 2.47 -72.87 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.27 Total: 32.41 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.03 Total: -5.01 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -5.81 Total: -127.21 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.34 2.47 -72.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996685815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.398 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds