Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99953 * 2 1 4 4 H 1.48505 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47300 * 299.99781 * 3 2 1 6 6 H 1.48492 * 109.47360 * 59.99934 * 3 2 1 7 7 C 1.38816 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99452 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00449 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00075 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.45785 * 155.00053 * 10 9 7 12 12 C 1.53188 * 109.31306 * 181.38521 * 11 10 9 13 13 N 1.46922 * 108.77514 * 305.36675 * 12 11 10 14 14 C 1.34775 * 120.63326 * 233.58065 * 13 12 11 15 15 O 1.21284 * 119.99693 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00448 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47232 * 180.02562 * 16 14 13 18 18 C 1.39377 * 119.49321 * 90.00123 * 17 16 14 19 19 C 1.36170 * 121.08693 * 180.02562 * 18 17 16 20 20 C 1.40374 * 119.50991 * 359.97438 * 19 18 17 21 21 C 1.40430 * 122.06810 * 179.97438 * 20 19 18 22 22 N 1.31243 * 119.87953 * 180.02562 * 21 20 19 23 23 C 1.32605 * 122.77949 * 359.97438 * 22 21 20 24 24 C 1.36180 * 121.87370 * 0.02562 * 23 22 21 25 25 C 1.40688 * 118.66600 * 0.24869 * 24 23 22 26 26 C 1.36216 * 119.48792 * 270.02164 * 17 16 14 27 27 C 1.46926 * 118.73935 * 53.85593 * 13 12 11 28 28 C 1.53042 * 109.45833 * 275.06788 * 10 9 7 29 29 H 0.97000 * 120.00012 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00262 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.45808 * 35.02877 * 10 9 7 32 32 H 1.09004 * 109.50073 * 61.43654 * 11 10 9 33 33 H 1.09006 * 109.52610 * 301.35586 * 11 10 9 34 34 H 1.08998 * 109.59116 * 185.57505 * 12 11 10 35 35 H 1.09002 * 109.70184 * 65.22266 * 12 11 10 36 36 H 1.08999 * 109.47052 * 60.00447 * 16 14 13 37 37 H 1.08996 * 109.47051 * 300.00182 * 16 14 13 38 38 H 1.08003 * 119.45423 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.24139 * 180.02562 * 19 18 17 40 40 H 1.08005 * 120.06149 * 0.03011 * 21 20 19 41 41 H 1.08001 * 119.06331 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.66145 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.26160 * 0.02562 * 26 17 16 44 44 H 1.09009 * 109.58619 * 65.93342 * 27 13 12 45 45 H 1.09000 * 109.58557 * 186.34676 * 27 13 12 46 46 H 1.09000 * 109.49668 * 298.56689 * 28 10 9 47 47 H 1.09000 * 109.49769 * 58.66126 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9618 -6.0695 0.6404 13 7 2.4414 -6.3659 -0.7163 14 6 2.1735 -7.5532 -1.2952 15 8 1.5305 -8.3888 -0.6957 16 6 2.6718 -7.8421 -2.6878 17 6 2.2400 -9.2261 -3.0988 18 6 1.0187 -9.3996 -3.7475 19 6 0.5964 -10.6355 -4.1327 20 6 1.4039 -11.7541 -3.8732 21 6 1.0211 -13.0527 -4.2463 22 7 1.8095 -14.0681 -3.9819 23 6 2.9763 -13.9300 -3.3672 24 6 3.4378 -12.7135 -2.9651 25 6 2.6452 -11.5769 -3.2085 26 6 3.0493 -10.2884 -2.8303 27 6 3.2237 -5.3459 -1.4277 28 6 2.4234 -4.0346 -1.4368 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.9684 -3.5505 0.5904 32 1 0.2814 -4.8763 0.0066 33 1 0.9007 -4.4718 1.6259 34 1 1.3097 -6.8736 0.9814 35 1 2.8120 -5.9771 1.3164 36 1 3.7600 -7.7807 -2.7043 37 1 2.2561 -7.1112 -3.3813 38 1 0.3969 -8.5395 -3.9479 39 1 -0.3524 -10.7542 -4.6348 40 1 0.0796 -13.2155 -4.7499 41 1 3.5777 -14.8073 -3.1800 42 1 4.3911 -12.6237 -2.4655 43 1 3.9930 -10.1401 -2.3263 44 1 4.1748 -5.1932 -0.9175 45 1 3.4045 -5.6724 -2.4518 46 1 1.5126 -4.1654 -2.0212 47 1 3.0290 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996795968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 26.501421 kcal Electronic energy + Delta-G solvation = -28068.987770 eV Core-core repulsion = 24216.369187 eV Total energy + Delta-G solvation = -3852.618584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14374 -40.12133 -38.03228 -37.14430 -34.54263 -33.41363 -32.96230 -32.04348 -30.91495 -30.04087 -29.39383 -28.12795 -24.98161 -24.21922 -23.40944 -23.05208 -22.59483 -22.18849 -20.35260 -18.93467 -18.06542 -17.38574 -17.27783 -17.07415 -16.80320 -15.76422 -15.42339 -15.20931 -14.89092 -14.53045 -14.46725 -14.20324 -13.91080 -13.81707 -13.74387 -13.51745 -13.39168 -13.19253 -12.91216 -12.53111 -12.26892 -12.12173 -11.99172 -11.83450 -11.61893 -11.31672 -11.03130 -10.94034 -10.87464 -10.54695 -10.47561 -10.25449 -9.90344 -9.84803 -9.76913 -9.72940 -9.14625 -8.97217 -8.56101 -8.32670 -7.03953 -5.83353 -3.12830 0.09896 0.62547 1.66991 2.60057 2.69060 3.11678 3.37944 3.43450 3.45992 3.81960 4.11267 4.21329 4.29578 4.51725 4.53265 4.55594 4.58353 4.71905 4.86739 4.96235 5.05163 5.09509 5.21551 5.26536 5.27934 5.32630 5.34939 5.42966 5.47696 5.50792 5.57848 5.66339 5.77786 5.79761 5.88374 5.94440 6.07901 6.16462 6.23017 6.29593 6.32841 6.35962 6.44692 6.54389 6.57468 6.82588 6.96895 7.43870 7.63106 7.69233 8.16409 8.34758 9.46131 10.03391 10.37914 11.39166 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.001880 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.791483 B =14891.872155 C =15015.633323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.541 6.541 16 C -0.109 4.109 17 C -0.035 4.035 18 C -0.100 4.100 19 C -0.088 4.088 20 C -0.113 4.113 21 C 0.146 3.854 22 N -0.494 5.494 23 C 0.071 3.929 24 C -0.153 4.153 25 C -0.020 4.020 26 C -0.102 4.102 27 C 0.105 3.895 28 C -0.151 4.151 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -23.236 -8.604 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.339 5.339 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.148 4.148 17 C -0.037 4.037 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.026 4.026 22 N -0.201 5.201 23 C -0.072 4.072 24 C -0.173 4.173 25 C -0.025 4.025 26 C -0.120 4.120 27 C -0.018 4.018 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.592 -24.416 -8.437 26.660 hybrid contribution 0.450 2.072 0.240 2.134 sum 7.042 -22.344 -8.197 24.820 Atomic orbital electron populations 1.69673 1.05133 1.25614 1.57536 1.24762 0.95513 0.97751 1.02927 0.86134 0.78757 0.84156 0.77216 1.20549 1.21886 1.21855 1.19272 0.90992 0.84072 1.42831 0.91099 1.42445 1.05820 0.99705 1.88482 1.20166 0.94471 0.86109 0.92437 1.22202 0.99186 0.94097 1.02265 1.21612 0.98730 0.98074 0.82211 1.48185 1.53883 1.14805 1.17059 1.20352 0.80048 0.81590 0.87648 1.90711 1.40143 1.46007 1.65010 1.20823 1.03268 0.95254 0.95500 1.19184 0.94253 0.94195 0.96074 1.20824 0.95454 0.97938 0.97611 1.20932 0.99088 0.91520 0.99186 1.19035 0.95612 0.95712 1.01152 1.23199 0.98053 0.86879 0.94445 1.67410 1.05041 1.34941 1.12751 1.22143 0.92661 0.97042 0.95340 1.21907 1.00802 0.92948 1.01647 1.18115 0.93723 0.94117 0.96587 1.20758 1.00356 0.90843 1.00009 1.21997 0.94546 0.88879 0.96395 1.22756 0.99984 0.94661 1.01815 0.93512 0.78257 0.93409 0.91855 0.90553 0.89421 0.91603 0.87699 0.87405 0.85432 0.84769 0.82054 0.83154 0.84564 0.85278 0.91307 0.90444 0.92135 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.72 -17.22 5.12 -53.38 -0.27 -17.49 16 10 C 0.18 3.24 2.73 -67.89 -0.19 3.05 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 12 C 0.12 1.59 6.43 -3.71 -0.02 1.57 16 13 N -0.61 -7.71 2.97 -172.51 -0.51 -8.22 16 14 C 0.52 6.68 7.69 -10.99 -0.08 6.60 16 15 O -0.54 -8.98 15.45 5.55 0.09 -8.89 16 16 C -0.11 -1.00 4.14 -29.03 -0.12 -1.12 16 17 C -0.04 -0.36 4.34 -104.93 -0.46 -0.82 16 18 C -0.10 -0.98 9.58 -39.90 -0.38 -1.36 16 19 C -0.09 -0.79 9.81 -39.52 -0.39 -1.18 16 20 C -0.11 -1.15 5.74 -106.86 -0.61 -1.76 16 21 C 0.15 1.37 11.05 -16.98 -0.19 1.18 16 22 N -0.49 -5.26 10.30 -13.15 -0.14 -5.40 16 23 C 0.07 0.65 11.07 -17.96 -0.20 0.46 16 24 C -0.15 -1.38 9.88 -39.40 -0.39 -1.77 16 25 C -0.02 -0.21 5.75 -106.81 -0.61 -0.83 16 26 C -0.10 -1.03 9.42 -39.56 -0.37 -1.40 16 27 C 0.11 1.19 6.37 -3.49 -0.02 1.17 16 28 C -0.15 -2.32 5.67 -26.39 -0.15 -2.47 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 31 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.72 7.86 -51.93 -0.41 0.31 16 37 H 0.11 0.83 7.64 -51.93 -0.40 0.43 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -33.67 386.06 -10.73 -44.40 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.83 Total: 7.86 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -4.58 Total: -8.01 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.20 Total: -57.87 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.67 -10.73 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996795968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.903 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds