Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99686 * 2 1 4 4 H 1.48495 * 109.47459 * 269.99846 * 3 2 1 5 5 H 1.48505 * 109.46995 * 30.00149 * 3 2 1 6 6 H 1.48507 * 109.46874 * 149.99601 * 3 2 1 7 7 C 1.38805 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00233 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.46511 * 154.99808 * 10 9 7 12 12 C 1.53187 * 109.31606 * 181.38879 * 11 10 9 13 13 N 1.46926 * 108.77227 * 305.36475 * 12 11 10 14 14 C 1.34787 * 120.62918 * 233.33389 * 13 12 11 15 15 O 1.21276 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99759 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.46694 * 180.02562 * 16 14 13 18 18 C 1.36115 * 120.12416 * 264.72094 * 17 16 14 19 19 C 1.39310 * 121.06400 * 179.68526 * 18 17 16 20 20 C 1.36168 * 120.87377 * 0.64233 * 19 18 17 21 21 C 1.40391 * 119.60924 * 359.66568 * 20 19 18 22 22 C 1.40777 * 121.38024 * 180.02562 * 21 20 19 23 23 C 1.36568 * 118.15228 * 179.97438 * 22 21 20 24 24 C 1.39331 * 119.93947 * 359.97438 * 23 22 21 25 25 N 1.31083 * 121.75521 * 359.97438 * 24 23 22 26 26 C 1.33686 * 121.31891 * 0.02562 * 25 24 23 27 27 C 1.46924 * 118.73991 * 53.60881 * 13 12 11 28 28 C 1.53041 * 109.46043 * 275.06913 * 10 9 7 29 29 H 0.96998 * 120.00673 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00016 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.45881 * 35.02247 * 10 9 7 32 32 H 1.08999 * 109.49677 * 61.43283 * 11 10 9 33 33 H 1.09001 * 109.52131 * 301.35690 * 11 10 9 34 34 H 1.09002 * 109.58471 * 185.57893 * 12 11 10 35 35 H 1.08996 * 109.70613 * 65.22278 * 12 11 10 36 36 H 1.08998 * 109.47136 * 299.99814 * 16 14 13 37 37 H 1.09001 * 109.47288 * 59.99840 * 16 14 13 38 38 H 1.08000 * 119.46301 * 0.02695 * 18 17 16 39 39 H 1.08005 * 119.56366 * 180.30923 * 19 18 17 40 40 H 1.07995 * 120.19726 * 179.64094 * 20 19 18 41 41 H 1.08005 * 120.91991 * 0.02562 * 22 21 20 42 42 H 1.07999 * 120.03059 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.12092 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.58516 * 66.18182 * 27 13 12 45 45 H 1.09002 * 109.58479 * 186.60340 * 27 13 12 46 46 H 1.08999 * 109.49559 * 298.56394 * 28 10 9 47 47 H 1.09004 * 109.49619 * 58.62967 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.1802 -4.7525 0.6071 12 6 1.9617 -6.0696 0.6372 13 7 2.4422 -6.3655 -0.7194 14 6 2.1791 -7.5545 -1.2970 15 8 1.5397 -8.3920 -0.6967 16 6 2.6794 -7.8431 -2.6890 17 6 2.2530 -9.2292 -3.0987 18 6 3.1002 -10.2815 -2.9330 19 6 2.7239 -11.5720 -3.2988 20 6 1.5004 -11.8146 -3.8452 21 6 0.6031 -10.7519 -4.0365 22 6 -0.6711 -10.9604 -4.5975 23 6 -1.4913 -9.8796 -4.7532 24 6 -1.0577 -8.6152 -4.3600 25 7 0.1291 -8.4247 -3.8369 26 6 0.9804 -9.4397 -3.6572 27 6 3.2203 -5.3429 -1.4319 28 6 2.4246 -4.0339 -1.4388 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0023 31 1 2.9682 -3.5506 0.5890 32 1 0.2816 -4.8763 0.0026 33 1 0.8998 -4.4725 1.6225 34 1 1.3093 -6.8739 0.9773 35 1 2.8113 -5.9775 1.3138 36 1 2.2613 -7.1145 -3.3837 37 1 3.7673 -7.7776 -2.7049 38 1 4.0780 -10.1141 -2.5060 39 1 3.4136 -12.3900 -3.1520 40 1 1.2222 -12.8184 -4.1302 41 1 -0.9914 -11.9478 -4.8957 42 1 -2.4751 -10.0048 -5.1808 43 1 -1.7169 -7.7696 -4.4895 44 1 4.1727 -5.1890 -0.9245 45 1 3.3983 -5.6677 -2.4570 46 1 1.5143 -4.1645 -2.0240 47 1 3.0301 -3.2419 -1.8797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996866013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 8.782652 kcal Electronic energy + Delta-G solvation = -28779.411999 eV Core-core repulsion = 24926.025072 eV Total energy + Delta-G solvation = -3853.386927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92871 -41.00383 -38.81125 -37.96013 -36.11954 -35.07828 -33.85620 -32.65007 -31.79341 -31.43954 -30.98269 -28.62167 -26.45961 -25.13070 -24.51008 -24.39844 -24.09836 -22.39308 -21.42511 -19.99173 -19.17279 -19.04423 -18.24322 -17.88701 -17.71261 -16.77115 -16.67688 -16.37226 -15.58931 -15.50702 -15.44348 -15.27761 -15.20339 -14.94912 -14.80138 -14.63913 -14.27272 -13.98606 -13.82064 -13.73289 -13.30691 -13.13176 -12.90296 -12.83645 -12.65549 -12.61338 -12.50737 -12.18735 -12.14962 -12.11383 -12.00710 -11.69389 -11.44098 -11.31407 -10.95436 -10.74943 -10.39036 -9.68428 -9.64494 -9.09708 -9.00522 -7.92433 -5.21554 -0.51928 -0.08245 1.04150 1.48356 1.50031 1.58252 1.65940 1.97586 2.15364 2.57443 3.14781 3.40201 3.40905 3.55856 3.66727 3.81377 3.83128 3.89863 3.98279 4.07468 4.09772 4.12925 4.20218 4.30528 4.34897 4.38259 4.41811 4.47174 4.56937 4.62639 4.64585 4.78387 4.82362 4.86568 4.91009 5.03291 5.06358 5.10042 5.15793 5.17861 5.30982 5.48318 5.49292 5.50636 5.55119 5.63545 5.65935 5.98319 6.28883 6.45012 7.01301 7.19940 7.34577 8.10196 8.33616 9.31502 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.002409 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.956823 B =11618.828036 C =12331.586076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.175 3.825 11 C -0.127 4.127 12 C 0.125 3.875 13 N -0.609 5.609 14 C 0.523 3.477 15 O -0.583 6.583 16 C -0.088 4.088 17 C -0.069 4.069 18 C -0.095 4.095 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.059 4.059 23 C -0.178 4.178 24 C 0.112 3.888 25 N -0.508 5.508 26 C 0.110 3.890 27 C 0.115 3.885 28 C -0.141 4.141 29 H 0.249 0.751 30 H 0.369 0.631 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.039 0.961 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.345 -27.269 -11.004 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.067 3.933 11 C -0.166 4.166 12 C 0.001 3.999 13 N -0.342 5.342 14 C 0.313 3.687 15 O -0.464 6.464 16 C -0.127 4.127 17 C -0.070 4.070 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.198 4.198 24 C -0.060 4.060 25 N -0.217 5.217 26 C -0.011 4.011 27 C -0.007 4.007 28 C -0.182 4.182 29 H 0.058 0.942 30 H 0.200 0.800 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.058 0.942 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.549 -26.747 -10.368 29.425 hybrid contribution -0.966 0.852 -0.092 1.291 sum 5.584 -25.896 -10.460 28.481 Atomic orbital electron populations 1.69834 1.06784 1.25910 1.59983 1.25583 0.96315 1.01199 1.04141 0.85147 0.77764 0.79546 0.77367 1.21490 1.22659 1.19106 1.19649 0.91545 0.84980 1.40329 0.90104 1.42689 1.05351 1.01140 1.88641 1.20400 0.94240 0.84476 0.94196 1.22043 0.98456 0.94855 1.01235 1.21456 0.98922 0.95979 0.83501 1.48230 1.54267 1.14969 1.16699 1.20870 0.78668 0.80884 0.88259 1.90639 1.41997 1.47532 1.66204 1.20569 1.03891 0.95341 0.92945 1.19209 0.92618 0.95829 0.99367 1.21133 1.00355 0.92225 0.97733 1.21267 0.97260 0.97159 0.97844 1.21364 0.93346 0.98748 0.98414 1.19202 0.97238 0.94417 1.01996 1.21898 0.91331 1.01163 0.94072 1.22199 1.02688 0.92941 1.01955 1.23419 0.92173 0.98454 0.91911 1.67965 1.04974 1.34831 1.13892 1.19010 0.94413 0.89610 0.98099 1.21922 0.94144 0.86242 0.98426 1.22446 0.99752 0.96829 0.99155 0.94210 0.80020 0.92909 0.93897 0.91066 0.90599 0.89511 0.87652 0.84844 0.83309 0.82276 0.82194 0.81015 0.81398 0.81375 0.88974 0.87657 0.94181 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.23 -12.76 9.93 84.03 0.83 -11.93 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -37.40 5.12 -322.81 -1.65 -39.06 16 10 C 0.18 6.77 2.73 45.02 0.12 6.90 16 11 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 12 C 0.12 3.72 6.43 86.36 0.56 4.27 16 13 N -0.61 -17.24 2.97 -818.91 -2.43 -19.68 16 14 C 0.52 15.81 7.69 87.66 0.67 16.48 16 15 O -0.58 -22.17 15.45 -3.02 -0.05 -22.22 16 16 C -0.09 -2.06 3.91 29.10 0.11 -1.95 16 17 C -0.07 -1.72 4.38 -19.79 -0.09 -1.81 16 18 C -0.09 -1.79 9.57 22.03 0.21 -1.58 16 19 C -0.12 -1.79 9.95 22.05 0.22 -1.57 16 20 C -0.10 -1.59 9.78 22.31 0.22 -1.38 16 21 C -0.13 -2.74 5.74 -21.28 -0.12 -2.86 16 22 C -0.06 -0.96 9.90 22.50 0.22 -0.74 16 23 C -0.18 -2.97 10.03 22.14 0.22 -2.75 16 24 C 0.11 2.59 11.14 85.07 0.95 3.54 16 25 N -0.51 -14.97 9.51 -188.64 -1.79 -16.77 16 26 C 0.11 3.02 6.58 40.29 0.27 3.29 16 27 C 0.12 2.79 6.34 86.36 0.55 3.33 16 28 C -0.14 -4.72 5.66 30.67 0.17 -4.55 16 29 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.37 20.57 7.80 -92.71 -0.72 19.85 16 31 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.46 7.01 -2.39 -0.02 2.44 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 2.60 7.27 -2.39 -0.02 2.58 16 37 H 0.13 2.06 7.83 -2.39 -0.02 2.04 16 38 H 0.15 2.01 8.04 -2.91 -0.02 1.99 16 39 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 2.01 5.94 -2.39 -0.01 1.99 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -79.53 385.03 2.40 -77.13 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.26 Total: 34.51 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.76 Total: -1.75 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -5.60 Total: -135.70 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -79.53 2.40 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996866013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.908 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds