Wall clock time and date at job start Sat Apr 11 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46758 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.46902 * 59.99572 * 3 2 1 7 7 C 1.38820 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99794 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99848 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50235 * 325.05975 * 10 9 7 12 12 C 1.53042 * 109.49538 * 204.99432 * 10 9 7 13 13 C 1.53049 * 109.53737 * 178.68440 * 12 10 9 14 14 C 1.53195 * 109.31118 * 61.36740 * 13 12 10 15 15 N 1.46930 * 108.77341 * 305.36401 * 14 13 12 16 16 C 1.34776 * 120.62722 * 233.58568 * 15 14 13 17 17 O 1.21287 * 119.99648 * 180.02562 * 16 15 14 18 18 C 1.50692 * 120.00222 * 0.02562 * 16 15 14 19 19 C 1.50706 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.39376 * 119.49133 * 269.98043 * 19 18 16 21 21 C 1.36167 * 121.08531 * 180.02562 * 20 19 18 22 22 C 1.40382 * 119.51518 * 0.02562 * 21 20 19 23 23 C 1.40423 * 122.07500 * 179.97438 * 22 21 20 24 24 N 1.31244 * 119.87919 * 180.02562 * 23 22 21 25 25 C 1.32603 * 122.77826 * 359.97438 * 24 23 22 26 26 C 1.36174 * 121.87667 * 0.02562 * 25 24 23 27 27 C 1.40693 * 118.66847 * 359.97438 * 26 25 24 28 28 C 1.36220 * 119.48676 * 90.00150 * 19 18 16 29 29 C 1.46919 * 118.73789 * 53.86499 * 15 14 13 30 30 H 0.96999 * 119.99698 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99935 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.45943 * 58.66783 * 12 10 9 33 33 H 1.09001 * 109.45481 * 298.69454 * 12 10 9 34 34 H 1.09001 * 109.49299 * 301.41820 * 13 12 10 35 35 H 1.08996 * 109.52072 * 181.33792 * 13 12 10 36 36 H 1.09004 * 109.58457 * 185.58194 * 14 13 12 37 37 H 1.08994 * 109.58412 * 65.15514 * 14 13 12 38 38 H 1.09003 * 109.47348 * 60.00545 * 18 16 15 39 39 H 1.08995 * 109.47444 * 300.00149 * 18 16 15 40 40 H 1.08002 * 119.45308 * 0.02562 * 20 19 18 41 41 H 1.07997 * 120.24441 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.06381 * 0.04774 * 23 22 21 43 43 H 1.08004 * 119.06257 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.67078 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.26012 * 359.95877 * 28 19 18 46 46 H 1.09000 * 109.59168 * 65.92540 * 29 15 14 47 47 H 1.08995 * 109.58760 * 186.35016 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9693 -3.5508 -0.5879 12 6 1.1809 -4.7529 -0.6090 13 6 1.9571 -6.0716 -0.6396 14 6 2.3171 -6.4808 0.7921 15 7 3.0362 -5.3720 1.4342 16 6 4.2389 -5.5744 2.0078 17 8 4.8223 -4.6510 2.5350 18 6 4.8588 -6.9479 1.9941 19 6 6.1923 -6.9042 2.6948 20 6 7.3444 -6.6283 1.9606 21 6 8.5660 -6.5814 2.5604 22 6 8.6680 -6.8151 3.9409 23 6 9.8999 -6.7805 4.6140 24 7 9.9455 -7.0060 5.9061 25 6 8.8647 -7.2706 6.6273 26 6 7.6238 -7.3269 6.0692 27 6 7.4941 -7.0959 4.6874 28 6 6.2530 -7.1354 4.0359 29 6 2.4166 -4.0400 1.4444 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 0.9021 -4.4720 -1.6247 33 1 0.2811 -4.8751 -0.0061 34 1 2.8697 -5.9431 -1.2216 35 1 1.3408 -6.8465 -1.0954 36 1 2.9538 -7.3653 0.7702 37 1 1.4062 -6.6975 1.3502 38 1 5.0009 -7.2721 0.9632 39 1 4.2007 -7.6486 2.5080 40 1 7.2670 -6.4488 0.8984 41 1 9.4499 -6.3660 1.9784 42 1 10.8082 -6.5684 4.0695 43 1 8.9715 -7.4465 7.6875 44 1 6.7566 -7.5444 6.6750 45 1 5.3525 -7.3477 4.5928 46 1 1.5137 -4.0616 2.0547 47 1 3.1188 -3.3134 1.8530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999684397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:38 Heat of formation + Delta-G solvation = 27.187422 kcal Electronic energy + Delta-G solvation = -28379.637550 eV Core-core repulsion = 24527.048714 eV Total energy + Delta-G solvation = -3852.588836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07599 -39.99573 -37.97897 -37.03729 -34.52504 -33.32292 -32.83352 -32.26190 -31.19360 -30.01237 -28.91553 -27.74884 -25.09739 -24.16996 -23.98251 -22.97153 -22.39479 -21.93162 -20.28177 -18.84776 -18.00742 -17.31797 -17.13634 -17.09147 -16.74910 -15.63488 -15.40655 -15.14064 -14.77136 -14.45166 -14.32709 -14.26688 -14.11569 -13.86638 -13.69019 -13.45316 -13.35528 -12.94159 -12.83160 -12.50664 -12.41479 -12.10777 -11.98788 -11.91702 -11.38575 -11.25932 -11.06997 -10.87851 -10.69843 -10.61964 -10.41422 -10.19822 -9.85948 -9.81177 -9.71477 -9.62986 -9.13319 -9.04463 -8.37795 -8.26495 -7.02266 -5.81143 -3.10916 0.16029 0.68602 1.73138 2.75361 2.76843 3.24493 3.43045 3.49622 3.51897 3.87992 4.17180 4.27146 4.34974 4.55662 4.59412 4.63566 4.64113 4.77006 4.84858 4.92834 5.01757 5.07964 5.15547 5.20031 5.23171 5.38074 5.45046 5.47693 5.50911 5.54976 5.61623 5.75204 5.83587 5.85004 5.88315 5.99083 6.12013 6.13832 6.17288 6.28576 6.30673 6.41891 6.45553 6.62009 6.69547 6.79262 6.97288 7.61761 7.70111 7.75101 8.34292 8.37936 9.49035 10.02775 10.37843 11.41156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002500 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.583042 B =11198.676681 C =12554.885556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.607 5.607 16 C 0.510 3.490 17 O -0.533 6.533 18 C -0.108 4.108 19 C -0.036 4.036 20 C -0.100 4.100 21 C -0.088 4.088 22 C -0.113 4.113 23 C 0.145 3.855 24 N -0.493 5.493 25 C 0.071 3.929 26 C -0.153 4.153 27 C -0.020 4.020 28 C -0.101 4.101 29 C 0.092 3.908 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.060 0.940 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -22.731 4.874 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.341 5.341 16 C 0.297 3.703 17 O -0.409 6.409 18 C -0.148 4.148 19 C -0.037 4.037 20 C -0.118 4.118 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.026 4.026 24 N -0.201 5.201 25 C -0.072 4.072 26 C -0.173 4.173 27 C -0.026 4.026 28 C -0.119 4.119 29 C -0.032 4.032 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.179 0.821 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.079 0.921 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.085 -22.062 5.719 26.281 hybrid contribution -0.946 0.977 -0.400 1.418 sum 12.138 -21.086 5.320 24.905 Atomic orbital electron populations 1.69668 1.05123 1.25675 1.57531 1.24751 0.95524 0.97775 1.02652 0.86124 0.78984 0.83985 0.77194 1.20416 1.21817 1.21758 1.19308 0.91109 0.83961 1.42914 0.91022 1.42389 1.05812 0.99627 1.88077 1.20573 0.94869 0.86416 0.92369 0.93140 1.21832 0.98715 0.94121 1.01842 1.21885 1.00948 0.98252 0.95802 1.21757 0.97019 0.88989 0.93967 1.48308 1.18788 1.11237 1.55797 1.20360 0.81109 0.90087 0.78746 1.90750 1.61371 1.44188 1.44597 1.20830 0.94465 0.96635 1.02824 1.19183 0.94080 0.96754 0.93721 1.20802 0.91890 0.98663 1.00454 1.20923 0.98261 0.98670 0.92892 1.19033 0.94494 1.02854 0.95127 1.23188 0.96185 0.93090 0.90143 1.67406 1.32904 1.11886 1.07928 1.22137 0.87959 0.97108 1.00006 1.21909 0.99440 1.01676 0.94233 1.18119 0.93339 0.97443 0.93655 1.20756 0.96408 1.00812 0.93933 1.22874 0.97681 0.81618 1.01021 0.93499 0.78079 0.91396 0.92034 0.91585 0.90979 0.90299 0.91358 0.87725 0.87909 0.85497 0.84804 0.82072 0.83158 0.84558 0.85282 0.92134 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -17.65 5.12 -53.09 -0.27 -17.92 16 10 C 0.17 3.26 2.94 -67.58 -0.20 3.07 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.13 -1.89 5.35 -26.68 -0.14 -2.03 16 13 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 14 C 0.11 1.06 6.34 -3.71 -0.02 1.03 16 15 N -0.61 -8.64 2.97 -172.50 -0.51 -9.15 16 16 C 0.51 7.45 7.69 -10.99 -0.08 7.36 16 17 O -0.53 -10.36 15.45 5.55 0.09 -10.28 16 18 C -0.11 -1.03 4.14 -29.04 -0.12 -1.15 16 19 C -0.04 -0.39 4.34 -104.92 -0.46 -0.85 16 20 C -0.10 -1.04 9.58 -39.90 -0.38 -1.42 16 21 C -0.09 -0.85 9.81 -39.52 -0.39 -1.24 16 22 C -0.11 -1.24 5.74 -106.86 -0.61 -1.86 16 23 C 0.15 1.48 11.05 -16.98 -0.19 1.29 16 24 N -0.49 -5.65 10.30 -13.16 -0.14 -5.78 16 25 C 0.07 0.71 11.07 -17.96 -0.20 0.51 16 26 C -0.15 -1.52 9.88 -39.40 -0.39 -1.91 16 27 C -0.02 -0.23 5.75 -106.81 -0.61 -0.85 16 28 C -0.10 -1.11 9.42 -39.56 -0.37 -1.49 16 29 C 0.09 1.70 6.05 -3.49 -0.02 1.68 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 9.95 7.80 -40.82 -0.32 9.63 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.75 7.63 -51.93 -0.40 0.35 16 39 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 1.98 7.00 -51.93 -0.36 1.62 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -35.14 386.07 -10.75 -45.89 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.83 Total: 7.65 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -4.60 Total: -6.68 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.19 Total: -60.06 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.14 -10.75 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.074 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds