Wall clock time and date at job start Sat Apr 11 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46758 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.46902 * 59.99572 * 3 2 1 7 7 C 1.38820 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99794 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99848 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50235 * 325.05975 * 10 9 7 12 12 C 1.53042 * 109.49538 * 204.99432 * 10 9 7 13 13 C 1.53049 * 109.53737 * 178.68440 * 12 10 9 14 14 C 1.53195 * 109.31118 * 61.36740 * 13 12 10 15 15 N 1.46930 * 108.77341 * 305.36401 * 14 13 12 16 16 C 1.34776 * 120.62722 * 233.58568 * 15 14 13 17 17 O 1.21287 * 119.99648 * 180.02562 * 16 15 14 18 18 C 1.50692 * 120.00222 * 0.02562 * 16 15 14 19 19 C 1.50706 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.39376 * 119.49133 * 269.98043 * 19 18 16 21 21 C 1.36167 * 121.08531 * 180.02562 * 20 19 18 22 22 C 1.40382 * 119.51518 * 0.02562 * 21 20 19 23 23 C 1.40423 * 122.07500 * 179.97438 * 22 21 20 24 24 N 1.31244 * 119.87919 * 180.02562 * 23 22 21 25 25 C 1.32603 * 122.77826 * 359.97438 * 24 23 22 26 26 C 1.36174 * 121.87667 * 0.02562 * 25 24 23 27 27 C 1.40693 * 118.66847 * 359.97438 * 26 25 24 28 28 C 1.36220 * 119.48676 * 90.00150 * 19 18 16 29 29 C 1.46919 * 118.73789 * 53.86499 * 15 14 13 30 30 H 0.96999 * 119.99698 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99935 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.45943 * 58.66783 * 12 10 9 33 33 H 1.09001 * 109.45481 * 298.69454 * 12 10 9 34 34 H 1.09001 * 109.49299 * 301.41820 * 13 12 10 35 35 H 1.08996 * 109.52072 * 181.33792 * 13 12 10 36 36 H 1.09004 * 109.58457 * 185.58194 * 14 13 12 37 37 H 1.08994 * 109.58412 * 65.15514 * 14 13 12 38 38 H 1.09003 * 109.47348 * 60.00545 * 18 16 15 39 39 H 1.08995 * 109.47444 * 300.00149 * 18 16 15 40 40 H 1.08002 * 119.45308 * 0.02562 * 20 19 18 41 41 H 1.07997 * 120.24441 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.06381 * 0.04774 * 23 22 21 43 43 H 1.08004 * 119.06257 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.67078 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.26012 * 359.95877 * 28 19 18 46 46 H 1.09000 * 109.59168 * 65.92540 * 29 15 14 47 47 H 1.08995 * 109.58760 * 186.35016 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9693 -3.5508 -0.5879 12 6 1.1809 -4.7529 -0.6090 13 6 1.9571 -6.0716 -0.6396 14 6 2.3171 -6.4808 0.7921 15 7 3.0362 -5.3720 1.4342 16 6 4.2389 -5.5744 2.0078 17 8 4.8223 -4.6510 2.5350 18 6 4.8588 -6.9479 1.9941 19 6 6.1923 -6.9042 2.6948 20 6 7.3444 -6.6283 1.9606 21 6 8.5660 -6.5814 2.5604 22 6 8.6680 -6.8151 3.9409 23 6 9.8999 -6.7805 4.6140 24 7 9.9455 -7.0060 5.9061 25 6 8.8647 -7.2706 6.6273 26 6 7.6238 -7.3269 6.0692 27 6 7.4941 -7.0959 4.6874 28 6 6.2530 -7.1354 4.0359 29 6 2.4166 -4.0400 1.4444 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 0.9021 -4.4720 -1.6247 33 1 0.2811 -4.8751 -0.0061 34 1 2.8697 -5.9431 -1.2216 35 1 1.3408 -6.8465 -1.0954 36 1 2.9538 -7.3653 0.7702 37 1 1.4062 -6.6975 1.3502 38 1 5.0009 -7.2721 0.9632 39 1 4.2007 -7.6486 2.5080 40 1 7.2670 -6.4488 0.8984 41 1 9.4499 -6.3660 1.9784 42 1 10.8082 -6.5684 4.0695 43 1 8.9715 -7.4465 7.6875 44 1 6.7566 -7.5444 6.6750 45 1 5.3525 -7.3477 4.5928 46 1 1.5137 -4.0616 2.0547 47 1 3.1188 -3.3134 1.8530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999684397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:37 Heat of formation + Delta-G solvation = 5.086462 kcal Electronic energy + Delta-G solvation = -28380.595920 eV Core-core repulsion = 24527.048714 eV Total energy + Delta-G solvation = -3853.547206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85508 -41.10095 -38.99184 -38.12433 -36.20853 -34.18183 -33.92248 -33.44175 -32.70038 -30.79332 -30.27588 -28.88721 -26.23678 -25.87780 -24.88196 -23.84559 -23.23817 -23.13757 -21.63666 -20.00259 -19.13482 -18.75133 -18.20958 -18.06913 -17.54328 -16.86136 -16.67183 -16.29649 -15.86639 -15.61036 -15.47454 -15.29889 -15.20486 -15.06602 -14.78948 -14.69969 -14.38811 -13.96768 -13.95682 -13.65354 -13.57392 -13.13249 -12.98273 -12.89515 -12.84790 -12.67162 -12.49537 -12.19190 -11.99636 -11.96002 -11.87258 -11.65036 -11.33712 -11.16868 -11.13186 -10.84988 -10.48392 -9.88692 -9.71114 -9.02918 -8.99638 -8.01231 -5.29983 -0.58102 -0.09896 0.97487 1.41743 1.43222 1.52953 1.66711 1.89705 2.24676 2.51537 3.10478 3.32214 3.47775 3.55143 3.62224 3.70638 3.81333 3.88037 3.92754 4.03971 4.09499 4.11549 4.21993 4.26500 4.35624 4.37570 4.40568 4.49157 4.56994 4.65799 4.69988 4.78346 4.79781 4.85456 4.90684 4.94391 5.07630 5.12467 5.13024 5.17845 5.38305 5.39606 5.43158 5.49419 5.52778 5.60546 5.70118 5.89791 6.22167 6.52677 6.99875 7.23701 7.28510 8.01733 8.26007 9.21668 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002500 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.583042 B =11198.676681 C =12554.885556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.731 5.731 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.120 4.120 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.606 5.606 16 C 0.505 3.495 17 O -0.592 6.592 18 C -0.094 4.094 19 C -0.048 4.048 20 C -0.116 4.116 21 C -0.090 4.090 22 C -0.132 4.132 23 C 0.140 3.860 24 N -0.517 5.517 25 C 0.059 3.941 26 C -0.159 4.159 27 C -0.044 4.044 28 C -0.114 4.114 29 C 0.108 3.892 30 H 0.253 0.747 31 H 0.377 0.623 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.188 0.812 43 H 0.173 0.827 44 H 0.157 0.843 45 H 0.141 0.859 46 H 0.054 0.946 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.448 -25.535 4.224 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.371 5.371 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.339 5.339 16 C 0.294 3.706 17 O -0.473 6.473 18 C -0.133 4.133 19 C -0.050 4.050 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.031 4.031 24 N -0.225 5.225 25 C -0.083 4.083 26 C -0.179 4.179 27 C -0.049 4.049 28 C -0.132 4.132 29 C -0.018 4.018 30 H 0.062 0.938 31 H 0.209 0.791 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.205 0.795 43 H 0.190 0.810 44 H 0.175 0.825 45 H 0.159 0.841 46 H 0.073 0.927 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.614 -24.945 5.054 28.864 hybrid contribution -1.061 1.796 -0.179 2.093 sum 12.553 -23.149 4.874 26.781 Atomic orbital electron populations 1.69791 1.06285 1.26084 1.59222 1.25476 0.96400 1.00773 1.03500 0.85181 0.78029 0.80257 0.76975 1.19843 1.21353 1.21904 1.19527 0.90961 0.85512 1.41417 0.91804 1.42545 1.05541 1.00741 1.88277 1.20759 0.94621 0.85961 0.92904 0.95015 1.21758 0.98513 0.94839 1.00710 1.21886 1.00935 0.96426 0.96765 1.22172 0.98299 0.88646 0.93001 1.48349 1.19077 1.10433 1.56050 1.21315 0.80471 0.91569 0.77210 1.90730 1.62844 1.46603 1.47075 1.20879 0.93846 0.93382 1.05231 1.19435 0.94955 0.96712 0.93919 1.21109 0.92097 0.98827 1.01372 1.21262 0.99267 0.97731 0.92653 1.19315 0.94809 1.03324 0.95920 1.23638 0.97019 0.92367 0.90040 1.67448 1.33682 1.12800 1.08617 1.22548 0.87870 0.96831 1.01082 1.22169 1.00223 1.01403 0.94068 1.18473 0.93929 0.97965 0.94568 1.20993 0.96750 1.01115 0.94362 1.22223 0.96363 0.83622 0.99573 0.93827 0.79067 0.92284 0.91706 0.91509 0.87128 0.85629 0.89879 0.84346 0.84469 0.84039 0.82253 0.79518 0.81038 0.82527 0.84104 0.92736 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.13 13.06 21.65 0.28 -58.85 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.24 -13.90 9.93 84.04 0.83 -13.07 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -37.12 5.12 -321.88 -1.65 -38.77 16 10 C 0.17 6.57 2.94 45.22 0.13 6.70 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.34 16 12 C -0.12 -3.41 5.35 30.62 0.16 -3.25 16 13 C -0.12 -2.13 6.08 30.68 0.19 -1.94 16 14 C 0.10 1.55 6.34 86.36 0.55 2.10 16 15 N -0.61 -16.23 2.97 -818.07 -2.43 -18.65 16 16 C 0.50 14.00 7.69 87.65 0.67 14.67 16 17 O -0.59 -23.50 15.45 -3.05 -0.05 -23.55 16 18 C -0.09 -1.46 4.14 29.10 0.12 -1.34 16 19 C -0.05 -0.97 4.34 -20.06 -0.09 -1.05 16 20 C -0.12 -2.22 9.58 22.06 0.21 -2.01 16 21 C -0.09 -1.63 9.81 22.31 0.22 -1.41 16 22 C -0.13 -2.81 5.74 -21.31 -0.12 -2.93 16 23 C 0.14 2.76 11.05 85.31 0.94 3.70 16 24 N -0.52 -11.57 10.30 -195.54 -2.01 -13.58 16 25 C 0.06 1.15 11.07 84.10 0.93 2.08 16 26 C -0.16 -3.06 9.88 22.39 0.22 -2.84 16 27 C -0.04 -0.99 5.75 -21.28 -0.12 -1.11 16 28 C -0.11 -2.38 9.42 22.28 0.21 -2.17 16 29 C 0.11 4.09 6.05 86.51 0.52 4.61 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.38 20.12 7.80 -92.70 -0.72 19.39 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.13 0.87 5.93 -2.38 -0.01 0.86 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.14 1.24 7.63 -2.39 -0.02 1.22 16 39 H 0.14 1.21 7.87 -2.39 -0.02 1.19 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.04 2.04 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -81.96 386.07 2.49 -79.47 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.26 Total: 27.06 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 6.05 Total: -2.81 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.81 Total: -129.86 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -81.96 2.49 -79.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.555 kcal (2) G-P(sol) polarization free energy of solvation -81.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds