Wall clock time and date at job start Sat Apr 11 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47338 * 299.99970 * 3 2 1 6 6 H 1.48503 * 109.47085 * 59.99980 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 163.06367 * 7 2 1 9 9 N 1.36930 * 120.00324 * 343.06571 * 7 2 1 10 10 C 1.46924 * 120.63300 * 151.82723 * 9 7 2 11 11 C 1.53194 * 108.89447 * 126.34039 * 10 9 7 12 12 C 1.53349 * 109.14721 * 54.57940 * 11 10 9 13 13 N 1.46507 * 109.41429 * 178.67503 * 12 11 10 14 14 C 1.34775 * 119.99781 * 275.12358 * 13 12 11 15 15 O 1.21276 * 120.00401 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99690 * 180.02562 * 14 13 12 17 17 C 1.50702 * 109.47090 * 180.02562 * 16 14 13 18 18 C 1.36208 * 120.66706 * 264.72289 * 17 16 14 19 19 N 1.32576 * 121.87395 * 179.74605 * 18 17 16 20 20 C 1.31272 * 122.77565 * 0.55264 * 19 18 17 21 21 C 1.40389 * 119.88168 * 359.72170 * 20 19 18 22 22 C 1.40382 * 122.08309 * 179.97438 * 21 20 19 23 23 C 1.36173 * 119.51967 * 180.02562 * 22 21 20 24 24 C 1.39386 * 121.08502 * 0.03765 * 23 22 21 25 25 C 1.36205 * 121.02520 * 359.97438 * 24 23 22 26 26 C 1.40239 * 119.48421 * 0.02562 * 25 24 23 27 27 C 1.53036 * 109.60956 * 298.70862 * 12 11 10 28 28 C 1.46929 * 120.63078 * 331.84993 * 9 7 2 29 29 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.59145 * 246.20128 * 10 9 7 31 31 H 1.09001 * 109.58665 * 6.48479 * 10 9 7 32 32 H 1.08999 * 109.49595 * 174.66017 * 11 10 9 33 33 H 1.08997 * 109.49661 * 294.75715 * 11 10 9 34 34 H 1.09000 * 109.42245 * 58.75320 * 12 11 10 35 35 H 0.97000 * 119.99649 * 95.13041 * 13 12 11 36 36 H 1.08996 * 109.47136 * 300.00151 * 16 14 13 37 37 H 1.09000 * 109.46794 * 60.00416 * 16 14 13 38 38 H 1.07997 * 119.06266 * 359.97438 * 18 17 16 39 39 H 1.07995 * 120.06125 * 179.75067 * 20 19 18 40 40 H 1.07997 * 120.24009 * 0.04689 * 22 21 20 41 41 H 1.07992 * 119.45421 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.48265 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.25696 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.50017 * 301.42937 * 27 12 11 45 45 H 1.08996 * 109.50185 * 181.32584 * 27 12 11 46 46 H 1.09002 * 109.58736 * 353.37125 * 28 9 7 47 47 H 1.08995 * 109.58640 * 113.65901 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0550 -1.2225 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2007 11 6 2.0698 -4.6198 0.9596 12 6 0.8119 -4.7020 1.8328 13 7 1.0396 -5.6496 2.9267 14 6 0.8360 -6.9673 2.7301 15 8 0.4649 -7.3687 1.6475 16 6 1.0697 -7.9420 3.8555 17 6 0.7733 -9.3405 3.3786 18 6 -0.4489 -9.9027 3.5916 19 7 -0.7372 -11.1289 3.1780 20 6 0.1288 -11.8884 2.5483 21 6 1.4200 -11.4054 2.2833 22 6 2.3823 -12.1779 1.6140 23 6 3.6195 -11.6573 1.3847 24 6 3.9474 -10.3692 1.8044 25 6 3.0397 -9.5910 2.4567 26 6 1.7553 -10.0938 2.7105 27 6 0.4975 -3.3208 2.4120 28 6 0.2260 -2.3408 1.2661 29 1 -0.4849 0.8401 -0.0004 30 1 1.0399 -4.0600 -0.8517 31 1 2.7329 -3.5126 -0.7693 32 1 2.3076 -5.6073 0.5643 33 1 2.9048 -4.2563 1.5585 34 1 -0.0283 -5.0417 1.2271 35 1 1.3367 -5.3286 3.7925 36 1 2.1089 -7.8814 4.1787 37 1 0.4143 -7.6961 4.6910 38 1 -1.2060 -9.3320 4.1089 39 1 -0.1518 -12.8829 2.2343 40 1 2.1430 -13.1777 1.2830 41 1 4.3588 -12.2524 0.8693 42 1 4.9366 -9.9823 1.6093 43 1 3.3072 -8.5948 2.7768 44 1 1.3473 -2.9697 2.9973 45 1 -0.3830 -3.3861 3.0511 46 1 0.0993 -1.3354 1.6676 47 1 -0.6775 -2.6386 0.7342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003060832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:46 Heat of formation + Delta-G solvation = 32.954006 kcal Electronic energy + Delta-G solvation = -28714.097390 eV Core-core repulsion = 24861.758612 eV Total energy + Delta-G solvation = -3852.338778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22172 -39.61835 -37.58816 -37.32438 -34.53424 -34.22968 -32.19576 -31.42108 -30.65653 -30.14111 -29.50364 -27.93803 -25.02110 -24.14190 -23.75364 -22.47801 -22.18797 -21.39437 -20.16307 -19.27656 -18.20116 -17.80699 -17.21690 -16.69427 -16.51459 -15.82291 -15.25140 -14.87471 -14.78644 -14.57829 -14.43853 -13.95856 -13.87477 -13.65564 -13.56166 -13.43582 -13.08382 -12.92056 -12.72444 -12.38390 -12.33243 -12.15524 -11.94885 -11.49143 -11.29891 -11.14820 -10.88458 -10.75907 -10.50729 -10.31784 -10.30086 -10.05895 -9.88476 -9.72673 -9.66325 -9.47730 -9.27486 -8.74337 -8.48337 -8.23126 -6.70819 -5.81879 -3.24200 0.13329 0.71330 1.68453 2.72281 2.84105 3.32089 3.35992 3.43039 3.45203 3.90963 4.10515 4.30837 4.46835 4.47346 4.50507 4.64697 4.70338 4.86439 4.91138 4.97459 5.05706 5.23726 5.31122 5.35774 5.41685 5.48445 5.52505 5.55939 5.64261 5.78904 5.83329 5.84629 6.04624 6.14407 6.22543 6.24116 6.30766 6.40606 6.50298 6.52348 6.56494 6.60464 6.76777 6.88617 6.96681 7.29148 7.56801 7.68629 7.77910 7.78944 8.35986 8.42326 9.18407 9.81537 10.38679 11.27115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002302 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.357490 B =12159.561165 C =12862.148779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.138 4.138 12 C 0.151 3.849 13 N -0.724 5.724 14 C 0.510 3.490 15 O -0.531 6.531 16 C -0.102 4.102 17 C -0.094 4.094 18 C 0.086 3.914 19 N -0.484 5.484 20 C 0.140 3.860 21 C -0.111 4.111 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.098 4.098 25 C -0.107 4.107 26 C -0.008 4.008 27 C -0.146 4.146 28 C 0.174 3.826 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -22.853 10.337 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.178 4.178 12 C 0.048 3.952 13 N -0.375 5.375 14 C 0.295 3.705 15 O -0.407 6.407 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.057 4.057 19 N -0.191 5.191 20 C -0.031 4.031 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.013 4.013 27 C -0.186 4.186 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.109 -23.169 9.757 25.473 hybrid contribution 1.404 1.452 0.205 2.030 sum 5.513 -21.717 9.962 24.520 Atomic orbital electron populations 1.70038 1.05262 1.25444 1.54003 1.25066 0.95303 0.98458 1.00892 0.86223 0.79348 0.83918 0.77293 1.20267 1.21700 1.21559 1.19227 0.92594 0.84715 1.41590 0.91611 1.44094 1.35820 1.01651 1.49969 1.20867 0.97876 0.86583 0.92661 1.22414 0.97100 0.99441 0.98847 1.21108 0.98473 0.88213 0.87432 1.46351 1.68857 1.06411 1.15870 1.20358 0.77873 0.83019 0.89272 1.90744 1.45481 1.78196 1.26272 1.20637 1.04790 0.90614 0.98264 1.20000 0.94971 0.95178 0.99449 1.22005 0.94594 0.91436 0.97655 1.67411 1.35471 1.05941 1.10306 1.23158 0.88077 0.98916 0.92955 1.19005 0.96391 0.94693 1.01252 1.20967 0.92946 0.99500 0.97399 1.20926 0.96964 0.95842 1.00129 1.20995 0.99746 0.94140 0.96870 1.20962 0.92326 0.99844 0.99313 1.17954 0.94178 0.93015 0.96133 1.22523 1.00515 0.94719 1.00808 1.20746 0.88915 0.97922 0.87696 0.93630 0.96246 0.92613 0.92824 0.92375 0.90110 0.77092 0.87822 0.87500 0.83194 0.82086 0.84984 0.85601 0.85542 0.85433 0.92166 0.92729 0.89025 0.96106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.73 2.99 -172.31 -0.52 -15.24 16 10 C 0.15 3.17 6.50 -3.71 -0.02 3.14 16 11 C -0.14 -2.48 5.68 -26.45 -0.15 -2.63 16 12 C 0.15 2.57 2.42 -67.73 -0.16 2.40 16 13 N -0.72 -9.45 5.08 -53.61 -0.27 -9.72 16 14 C 0.51 6.94 7.79 -10.98 -0.09 6.85 16 15 O -0.53 -9.74 15.70 5.56 0.09 -9.65 16 16 C -0.10 -0.97 5.31 -29.03 -0.15 -1.12 16 17 C -0.09 -1.09 4.40 -104.44 -0.46 -1.55 16 18 C 0.09 1.03 10.72 -17.96 -0.19 0.84 16 19 N -0.48 -6.04 10.30 -13.16 -0.14 -6.18 16 20 C 0.14 1.48 11.05 -16.98 -0.19 1.29 16 21 C -0.11 -1.21 5.74 -106.86 -0.61 -1.83 16 22 C -0.09 -0.75 9.81 -39.52 -0.39 -1.14 16 23 C -0.12 -0.98 9.94 -39.90 -0.40 -1.37 16 24 C -0.10 -0.89 9.95 -39.89 -0.40 -1.28 16 25 C -0.11 -1.13 9.33 -39.56 -0.37 -1.50 16 26 C -0.01 -0.09 5.75 -106.81 -0.61 -0.71 16 27 C -0.15 -2.60 5.55 -26.61 -0.15 -2.75 16 28 C 0.17 4.05 5.30 -3.70 -0.02 4.03 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 35 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 36 H 0.10 0.75 6.83 -51.93 -0.35 0.40 16 37 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 38 H 0.15 1.49 8.05 -52.49 -0.42 1.07 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.22 6.65 -52.48 -0.35 0.87 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -34.23 382.94 -10.86 -45.09 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.79 Total: 3.27 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.59 Total: -4.35 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.30 Total: -56.51 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.23 -10.86 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003060832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.042 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds