Wall clock time and date at job start Sat Apr 11 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48502 * 109.47249 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99655 * 3 2 1 6 6 H 1.48497 * 109.47097 * 150.00015 * 3 2 1 7 7 C 1.38813 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 163.06661 * 7 2 1 9 9 N 1.36939 * 119.99653 * 343.06877 * 7 2 1 10 10 C 1.46927 * 120.63073 * 331.83570 * 9 7 2 11 11 C 1.53190 * 108.77941 * 233.63038 * 10 9 7 12 12 C 1.53041 * 109.31249 * 305.37092 * 11 10 9 13 13 N 1.46506 * 109.46068 * 181.38660 * 12 11 10 14 14 C 1.34776 * 120.00273 * 154.97468 * 13 12 11 15 15 O 1.21284 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00103 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.36103 * 120.12772 * 264.99950 * 17 16 14 19 19 C 1.39314 * 121.06910 * 180.27792 * 18 17 16 20 20 C 1.36170 * 120.86598 * 359.49275 * 19 18 17 21 21 C 1.40392 * 119.61607 * 0.48262 * 20 19 18 22 22 C 1.40780 * 121.38248 * 179.75963 * 21 20 19 23 23 C 1.36563 * 118.15150 * 180.02562 * 22 21 20 24 24 C 1.39336 * 119.93980 * 0.02562 * 23 22 21 25 25 N 1.31084 * 121.75551 * 0.02562 * 24 23 22 26 26 C 1.33693 * 121.32018 * 359.96139 * 25 24 23 27 27 C 1.53041 * 109.53139 * 61.36793 * 12 11 10 28 28 C 1.46921 * 120.63171 * 151.86091 * 9 7 2 29 29 H 0.96996 * 120.00453 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58714 * 113.84662 * 10 9 7 31 31 H 1.08998 * 109.70620 * 353.49199 * 10 9 7 32 32 H 1.09000 * 109.50546 * 185.41444 * 11 10 9 33 33 H 1.09000 * 109.52536 * 65.33245 * 11 10 9 34 34 H 1.09003 * 109.45736 * 301.35048 * 12 11 10 35 35 H 0.97003 * 119.99650 * 334.95844 * 13 12 11 36 36 H 1.08997 * 109.47028 * 59.99069 * 16 14 13 37 37 H 1.09001 * 109.46846 * 299.99751 * 16 14 13 38 38 H 1.07997 * 119.46598 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.56914 * 179.72215 * 19 18 17 40 40 H 1.08004 * 120.19460 * 180.25993 * 20 19 18 41 41 H 1.07997 * 120.91858 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.03221 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.12574 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.49343 * 58.57748 * 27 12 11 45 45 H 1.08999 * 109.49437 * 178.67975 * 27 12 11 46 46 H 1.09001 * 109.58813 * 246.15616 * 28 9 7 47 47 H 1.08997 * 109.58728 * 6.44022 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2263 -2.3397 1.2684 11 6 0.4983 -3.3180 2.4155 12 6 0.8134 -4.6999 1.8383 13 7 1.0415 -5.6459 2.9334 14 6 0.8382 -6.9639 2.7388 15 8 0.4660 -7.3669 1.6572 16 6 1.0735 -7.9370 3.8652 17 6 0.7758 -9.3361 3.3908 18 6 -0.4510 -9.8843 3.6075 19 6 -0.7455 -11.1779 3.1824 20 6 0.1845 -11.9271 2.5282 21 6 1.4605 -11.3936 2.2871 22 6 2.4517 -12.1370 1.6188 23 6 3.6703 -11.5536 1.4199 24 6 3.9034 -10.2575 1.8751 25 7 2.9786 -9.5683 2.4981 26 6 1.7646 -10.0804 2.7247 27 6 2.0687 -4.6163 0.9669 28 6 1.8143 -3.6530 -0.1969 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6768 -2.6411 0.7376 31 1 0.0965 -1.3343 1.6686 32 1 -0.3821 -3.3829 3.0549 33 1 1.3477 -2.9660 3.0008 34 1 -0.0267 -5.0408 1.2331 35 1 1.3391 -5.3236 3.7986 36 1 0.4191 -7.6901 4.7012 37 1 2.1130 -7.8756 4.1872 38 1 -1.2067 -9.3090 4.1215 39 1 -1.7255 -11.5907 3.3710 40 1 -0.0569 -12.9273 2.1998 41 1 2.2540 -13.1411 1.2737 42 1 4.4530 -12.0966 0.9109 43 1 4.8721 -9.8091 1.7112 44 1 2.9034 -4.2515 1.5655 45 1 2.3060 -5.6053 0.5750 46 1 1.0407 -4.0614 -0.8471 47 1 2.7335 -3.5131 -0.7657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003403460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:48 Heat of formation + Delta-G solvation = 12.534874 kcal Electronic energy + Delta-G solvation = -28710.154512 eV Core-core repulsion = 24856.930294 eV Total energy + Delta-G solvation = -3853.224218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87970 -40.79436 -39.01055 -37.98198 -35.98559 -35.01023 -33.94598 -32.42962 -31.76371 -31.43284 -31.14905 -28.61244 -26.75324 -25.10405 -24.49849 -24.04215 -23.74452 -22.28730 -21.29698 -20.80139 -19.16442 -18.89498 -17.91657 -17.83970 -17.74084 -17.09638 -16.70086 -16.15669 -15.67298 -15.52026 -15.38384 -15.29378 -15.13859 -14.93543 -14.74299 -14.54302 -14.29149 -14.12968 -13.89415 -13.78577 -13.24655 -13.02967 -12.89203 -12.64984 -12.62512 -12.54827 -12.50457 -12.23670 -12.12125 -12.03307 -11.89916 -11.56947 -11.43162 -11.37053 -10.79903 -10.57183 -10.38922 -9.97406 -9.67341 -9.09535 -8.72566 -7.89211 -5.35283 -0.51302 -0.07424 1.04757 1.47736 1.48642 1.59212 1.74433 2.01340 2.33741 2.51080 3.17761 3.26940 3.42091 3.57007 3.62991 3.82914 3.85379 3.91671 4.00616 4.07433 4.09540 4.19227 4.30928 4.31506 4.41277 4.43831 4.49102 4.58601 4.61412 4.65600 4.80195 4.83528 4.90474 5.01588 5.02630 5.10639 5.13347 5.16497 5.18494 5.26334 5.44814 5.48630 5.49603 5.58954 5.62854 5.65723 5.69243 5.98662 6.37307 6.66853 7.01581 7.12749 7.36838 7.81625 8.35392 9.18136 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.002311 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.239715 B =12112.990926 C =12810.710007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.164 3.836 13 N -0.714 5.714 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.086 4.086 17 C -0.068 4.068 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.102 4.102 21 C -0.128 4.128 22 C -0.061 4.061 23 C -0.178 4.178 24 C 0.115 3.885 25 N -0.504 5.504 26 C 0.111 3.889 27 C -0.121 4.121 28 C 0.146 3.854 29 H 0.252 0.748 30 H -0.007 1.007 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.414 0.586 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.176 0.824 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.003 0.997 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -26.889 11.945 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.167 4.167 12 C 0.059 3.941 13 N -0.365 5.365 14 C 0.307 3.693 15 O -0.463 6.463 16 C -0.126 4.126 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.138 4.138 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.198 4.198 24 C -0.057 4.057 25 N -0.212 5.212 26 C -0.010 4.010 27 C -0.161 4.161 28 C 0.020 3.980 29 H 0.061 0.939 30 H 0.011 0.989 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.132 0.868 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.187 0.813 43 H 0.193 0.807 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.079 -26.152 11.521 28.743 hybrid contribution 0.181 0.573 -0.523 0.797 sum 3.260 -25.580 10.998 28.034 Atomic orbital electron populations 1.70184 1.06734 1.26043 1.55209 1.25840 0.96070 1.01595 1.00978 0.85238 0.78118 0.79283 0.77549 1.21300 1.21593 1.19366 1.19512 0.92868 0.85848 1.41342 0.91572 1.44338 1.36005 1.02077 1.50771 1.20568 0.87605 0.97835 0.88738 1.22250 1.02030 0.93517 0.98880 1.20581 0.96732 0.88603 0.88138 1.46047 1.68894 1.05987 1.15591 1.20995 0.75694 0.83031 0.89592 1.90682 1.48043 1.78873 1.28711 1.20544 1.06129 0.89154 0.96736 1.19200 0.93671 0.94965 0.99077 1.21130 0.95301 0.96323 0.99057 1.21251 1.00913 0.93834 0.97766 1.21357 0.91400 1.01241 0.98007 1.19202 0.97205 0.95112 1.01443 1.21885 0.92071 1.00691 0.94035 1.22222 0.99207 0.96538 1.01794 1.23478 0.98413 0.92098 0.91748 1.67954 1.01463 1.36744 1.15076 1.18975 0.92134 0.92187 0.97725 1.22129 0.98011 0.98134 0.97817 1.20934 0.97166 0.86100 0.93808 0.93935 0.98918 0.91679 0.90293 0.91075 0.92934 0.74981 0.84879 0.86759 0.83603 0.82578 0.82358 0.81267 0.81324 0.80740 0.91588 0.93097 0.97861 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 11.19 21.65 0.24 -55.66 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 3 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.27 -14.93 9.58 84.03 0.81 -14.12 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -31.77 2.99 -699.11 -2.09 -33.86 16 10 C 0.18 8.78 5.30 86.36 0.46 9.23 16 11 C -0.13 -4.68 5.55 30.67 0.17 -4.51 16 12 C 0.16 5.95 2.42 45.02 0.11 6.06 16 13 N -0.71 -20.10 5.08 -442.39 -2.25 -22.35 16 14 C 0.52 15.75 7.79 87.66 0.68 16.43 16 15 O -0.58 -23.50 15.70 -3.04 -0.05 -23.55 16 16 C -0.09 -1.89 5.56 29.10 0.16 -1.73 16 17 C -0.07 -1.68 4.38 -19.80 -0.09 -1.77 16 18 C -0.10 -1.97 9.56 22.03 0.21 -1.76 16 19 C -0.12 -1.98 9.95 22.05 0.22 -1.76 16 20 C -0.10 -1.70 9.78 22.31 0.22 -1.49 16 21 C -0.13 -2.77 5.74 -21.27 -0.12 -2.89 16 22 C -0.06 -0.98 9.90 22.50 0.22 -0.75 16 23 C -0.18 -2.74 10.03 22.14 0.22 -2.52 16 24 C 0.11 2.37 11.15 85.07 0.95 3.32 16 25 N -0.50 -13.74 9.51 -188.63 -1.79 -15.53 16 26 C 0.11 2.97 6.58 40.28 0.27 3.23 16 27 C -0.12 -4.68 5.65 30.67 0.17 -4.51 16 28 C 0.15 6.71 6.52 86.37 0.56 7.28 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.06 3.53 6.06 -2.39 -0.01 3.52 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 35 H 0.41 8.67 8.60 -92.71 -0.80 7.87 16 36 H 0.13 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.11 2.39 7.71 -2.39 -0.02 2.37 16 38 H 0.15 2.20 8.04 -2.91 -0.02 2.18 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 Total: -1.00 -79.45 385.03 1.91 -77.54 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.18 Total: 21.00 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.64 Total: 5.37 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.89 Total: -127.41 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -79.45 1.91 -77.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003403460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.073 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds