Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48502 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46869 * 299.99564 * 3 2 1 6 6 H 1.48503 * 109.47153 * 59.99489 * 3 2 1 7 7 C 1.38814 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99508 * 197.36899 * 7 2 1 9 9 N 1.36938 * 120.00233 * 17.37837 * 7 2 1 10 10 C 1.46920 * 120.62920 * 207.65316 * 9 7 2 11 11 C 1.53196 * 108.77690 * 233.63135 * 10 9 7 12 12 C 1.53036 * 109.31259 * 305.36833 * 11 10 9 13 13 C 1.53038 * 109.53830 * 61.36326 * 12 11 10 14 14 H 1.09001 * 109.52257 * 58.60061 * 13 12 11 15 15 N 1.46502 * 109.49674 * 178.68023 * 13 12 11 16 16 C 1.34772 * 119.99989 * 204.83746 * 15 13 12 17 17 O 1.21283 * 120.00406 * 0.02562 * 16 15 13 18 18 C 1.50704 * 120.00104 * 180.02562 * 16 15 13 19 19 C 1.50699 * 109.47356 * 180.02562 * 18 16 15 20 20 C 1.36204 * 120.66709 * 265.00298 * 19 18 16 21 21 N 1.32574 * 121.87331 * 180.02562 * 20 19 18 22 22 C 1.31262 * 122.78121 * 359.97438 * 21 20 19 23 23 C 1.40395 * 119.88293 * 0.27302 * 22 21 20 24 24 C 1.40383 * 122.08665 * 180.31955 * 23 22 21 25 25 C 1.36167 * 119.51545 * 179.69663 * 24 23 22 26 26 C 1.39383 * 121.09136 * 359.72359 * 25 24 23 27 27 C 1.36212 * 121.02136 * 359.97438 * 26 25 24 28 28 C 1.40236 * 119.48122 * 0.02562 * 27 26 25 29 29 C 1.46929 * 120.62946 * 27.68130 * 9 7 2 30 30 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.59113 * 353.42486 * 10 9 7 32 32 H 1.09001 * 109.58460 * 113.84537 * 10 9 7 33 33 H 1.09001 * 109.49726 * 65.32128 * 11 10 9 34 34 H 1.08996 * 109.49467 * 185.38062 * 11 10 9 35 35 H 1.09001 * 109.45634 * 301.34340 * 12 11 10 36 36 H 1.09001 * 109.45724 * 181.38513 * 12 11 10 37 37 H 0.97005 * 119.99799 * 24.84400 * 15 13 12 38 38 H 1.09000 * 109.46807 * 60.00305 * 18 16 15 39 39 H 1.09000 * 109.46898 * 299.99989 * 18 16 15 40 40 H 1.08004 * 119.06265 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.06331 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.23936 * 359.42221 * 24 23 22 43 43 H 1.08002 * 119.45417 * 179.74325 * 25 24 23 44 44 H 1.08000 * 119.48993 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.25666 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.58931 * 6.58395 * 29 9 7 47 47 H 1.08997 * 109.58118 * 246.15346 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2798 9 7 1.3723 -2.3612 -0.3531 10 6 1.8194 -3.6547 0.1810 11 6 2.0752 -4.6097 -0.9893 12 6 0.8199 -4.6896 -1.8609 13 6 0.5018 -3.3044 -2.4284 14 1 1.3502 -2.9460 -3.0114 15 7 -0.6817 -3.3882 -3.2879 16 6 -0.8695 -2.4806 -4.2664 17 8 -0.0585 -1.5947 -4.4357 18 6 -2.0871 -2.5663 -5.1502 19 6 -2.0585 -1.4438 -6.1552 20 6 -2.7212 -0.2785 -5.9142 21 7 -2.7126 0.7241 -6.7816 22 6 -2.0708 0.6688 -7.9253 23 6 -1.3596 -0.4907 -8.2730 24 6 -0.6520 -0.5974 -9.4807 25 6 0.0252 -1.7447 -9.7623 26 6 0.0325 -2.8141 -8.8684 27 6 -0.6376 -2.7440 -7.6846 28 6 -1.3462 -1.5780 -7.3606 29 6 0.2281 -2.3348 -1.2745 30 1 -0.4850 0.8400 -0.0004 31 1 2.7399 -3.5173 0.7485 32 1 1.0470 -4.0693 0.8288 33 1 2.9092 -4.2393 -1.5855 34 1 2.3152 -5.6007 -0.6043 35 1 -0.0193 -5.0366 -1.2580 36 1 0.9909 -5.3874 -2.6807 37 1 -1.3301 -4.0968 -3.1527 38 1 -2.9860 -2.4846 -4.5391 39 1 -2.0894 -3.5223 -5.6738 40 1 -3.2694 -0.1681 -4.9901 41 1 -2.0930 1.5123 -8.5994 42 1 -0.6484 0.2228 -10.1833 43 1 0.5659 -1.8273 -10.6936 44 1 0.5786 -3.7118 -9.1178 45 1 -0.6233 -3.5800 -7.0008 46 1 0.0986 -1.3264 -1.6676 47 1 -0.6741 -2.6417 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007527468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 35.161892 kcal Electronic energy + Delta-G solvation = -29317.711877 eV Core-core repulsion = 25465.468840 eV Total energy + Delta-G solvation = -3852.243037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05120 -39.36167 -37.46870 -37.23668 -34.24916 -33.98988 -32.66618 -31.28618 -30.53538 -30.01851 -29.17977 -27.42762 -25.25923 -24.06476 -23.61392 -22.47736 -22.09491 -21.21969 -19.93032 -19.24562 -18.04555 -17.65955 -16.79487 -16.73089 -16.46906 -15.60587 -15.09936 -14.89046 -14.53908 -14.37013 -14.23629 -14.00700 -13.75914 -13.57246 -13.50564 -13.21462 -13.05551 -12.75265 -12.42543 -12.31898 -12.18843 -12.02750 -11.89609 -11.78006 -11.14814 -11.00848 -10.74385 -10.70443 -10.49073 -10.22303 -10.15257 -9.97717 -9.92851 -9.52321 -9.49168 -9.34365 -9.13493 -8.53494 -8.41603 -8.07328 -6.64614 -5.74237 -3.17201 0.28760 0.86217 1.83398 2.98358 3.02398 3.43668 3.52177 3.53294 3.54498 4.07049 4.27719 4.48102 4.55969 4.61956 4.65843 4.77947 4.87677 5.02920 5.06507 5.14168 5.20524 5.35772 5.40721 5.43034 5.52227 5.54894 5.63369 5.66558 5.70551 5.78813 5.93709 5.98350 6.07688 6.13312 6.25577 6.32985 6.36410 6.41149 6.49491 6.57109 6.69467 6.74497 6.77077 6.93947 6.96233 7.30640 7.73681 7.84473 7.92974 7.97923 8.49384 8.65758 9.24649 9.88681 10.43060 11.33807 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003457 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.124830 B = 8096.544424 C = 9336.438493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.080 0.920 15 N -0.722 5.722 16 C 0.509 3.491 17 O -0.521 6.521 18 C -0.101 4.101 19 C -0.093 4.093 20 C 0.091 3.909 21 N -0.482 5.482 22 C 0.139 3.861 23 C -0.112 4.112 24 C -0.087 4.087 25 C -0.124 4.124 26 C -0.101 4.101 27 C -0.106 4.106 28 C -0.007 4.007 29 C 0.167 3.833 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -9.928 -17.881 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.012 3.988 14 H 0.098 0.902 15 N -0.373 5.373 16 C 0.294 3.706 17 O -0.396 6.396 18 C -0.141 4.141 19 C -0.096 4.096 20 C -0.053 4.053 21 N -0.189 5.189 22 C -0.033 4.033 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.142 4.142 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.012 4.012 29 C 0.040 3.960 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.112 0.888 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.485 -8.412 -17.610 20.272 hybrid contribution 0.577 -0.286 -0.053 0.646 sum -4.909 -8.698 -17.663 20.291 Atomic orbital electron populations 1.70018 1.05336 1.25442 1.53429 1.25011 0.95255 0.98442 1.00445 0.86267 0.79434 0.84061 0.77283 1.20195 1.21411 1.21701 1.19182 0.92754 0.84831 1.41876 0.91589 1.43972 1.36059 1.01608 1.49515 1.20955 0.97714 0.86890 0.92863 1.22003 0.96985 0.99322 0.98792 1.21667 0.98905 0.96042 0.98703 1.21960 0.87064 0.96809 0.92957 0.90165 1.46069 1.26444 1.31000 1.33759 1.20270 0.87178 0.82199 0.80993 1.90787 1.45267 1.33471 1.70084 1.20623 0.98948 0.98298 0.96277 1.20009 0.98331 0.96922 0.94304 1.22068 0.97358 0.88000 0.97825 1.67415 1.18652 1.29835 1.03021 1.23153 0.91321 0.95517 0.93272 1.19008 1.00820 0.95598 0.96023 1.20956 0.96111 0.98162 0.95451 1.20887 0.99802 0.93614 0.99853 1.20952 0.98289 0.98853 0.93939 1.20944 0.97295 0.97074 0.97039 1.17950 0.95896 0.94085 0.93257 1.21084 0.88674 0.98991 0.87223 0.93705 0.92639 0.96417 0.92177 0.92650 0.92262 0.93192 0.77517 0.87461 0.88089 0.82977 0.82153 0.85061 0.85741 0.85724 0.85500 0.88750 0.96566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 11.19 55.49 0.62 -26.51 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 23.00 29.59 -169.99 -5.03 17.97 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.26 -7.32 9.59 -15.06 -0.14 -7.47 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.59 -15.09 2.99 -172.32 -0.52 -15.60 16 10 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 12 C -0.11 -1.81 5.35 -26.69 -0.14 -1.96 16 13 C 0.12 2.26 2.60 -67.81 -0.18 2.08 16 14 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -11.16 5.08 -53.69 -0.27 -11.44 16 16 C 0.51 8.51 7.79 -10.99 -0.09 8.42 16 17 O -0.52 -11.64 15.70 5.55 0.09 -11.55 16 18 C -0.10 -1.20 5.31 -29.03 -0.15 -1.35 16 19 C -0.09 -1.32 4.40 -104.44 -0.46 -1.78 16 20 C 0.09 1.36 10.72 -17.96 -0.19 1.17 16 21 N -0.48 -7.34 10.30 -13.16 -0.14 -7.48 16 22 C 0.14 1.78 11.05 -16.98 -0.19 1.59 16 23 C -0.11 -1.44 5.74 -106.86 -0.61 -2.06 16 24 C -0.09 -0.87 9.81 -39.52 -0.39 -1.26 16 25 C -0.12 -1.15 9.94 -39.90 -0.40 -1.55 16 26 C -0.10 -1.02 9.95 -39.88 -0.40 -1.42 16 27 C -0.11 -1.26 9.33 -39.56 -0.37 -1.63 16 28 C -0.01 -0.09 5.75 -106.81 -0.61 -0.71 16 29 C 0.17 4.08 4.89 -3.71 -0.02 4.07 16 30 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.52 8.60 -40.82 -0.35 4.16 16 38 H 0.11 1.03 8.06 -51.93 -0.42 0.62 16 39 H 0.10 0.89 6.83 -51.93 -0.35 0.53 16 40 H 0.15 2.07 8.05 -52.48 -0.42 1.65 16 41 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.13 1.34 6.65 -52.48 -0.35 0.99 16 46 H 0.09 2.74 6.04 -51.93 -0.31 2.43 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -36.53 382.91 -10.88 -47.41 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.79 Total: 4.58 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.61 Total: -3.15 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.30 Total: -61.03 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.53 -10.88 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007527468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.570 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds