Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48502 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46869 * 299.99564 * 3 2 1 6 6 H 1.48503 * 109.47153 * 59.99489 * 3 2 1 7 7 C 1.38814 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99508 * 197.36899 * 7 2 1 9 9 N 1.36938 * 120.00233 * 17.37837 * 7 2 1 10 10 C 1.46920 * 120.62920 * 207.65316 * 9 7 2 11 11 C 1.53196 * 108.77690 * 233.63135 * 10 9 7 12 12 C 1.53036 * 109.31259 * 305.36833 * 11 10 9 13 13 C 1.53038 * 109.53830 * 61.36326 * 12 11 10 14 14 H 1.09001 * 109.52257 * 58.60061 * 13 12 11 15 15 N 1.46502 * 109.49674 * 178.68023 * 13 12 11 16 16 C 1.34772 * 119.99989 * 204.83746 * 15 13 12 17 17 O 1.21283 * 120.00406 * 0.02562 * 16 15 13 18 18 C 1.50704 * 120.00104 * 180.02562 * 16 15 13 19 19 C 1.50699 * 109.47356 * 180.02562 * 18 16 15 20 20 C 1.36204 * 120.66709 * 265.00298 * 19 18 16 21 21 N 1.32574 * 121.87331 * 180.02562 * 20 19 18 22 22 C 1.31262 * 122.78121 * 359.97438 * 21 20 19 23 23 C 1.40395 * 119.88293 * 0.27302 * 22 21 20 24 24 C 1.40383 * 122.08665 * 180.31955 * 23 22 21 25 25 C 1.36167 * 119.51545 * 179.69663 * 24 23 22 26 26 C 1.39383 * 121.09136 * 359.72359 * 25 24 23 27 27 C 1.36212 * 121.02136 * 359.97438 * 26 25 24 28 28 C 1.40236 * 119.48122 * 0.02562 * 27 26 25 29 29 C 1.46929 * 120.62946 * 27.68130 * 9 7 2 30 30 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.59113 * 353.42486 * 10 9 7 32 32 H 1.09001 * 109.58460 * 113.84537 * 10 9 7 33 33 H 1.09001 * 109.49726 * 65.32128 * 11 10 9 34 34 H 1.08996 * 109.49467 * 185.38062 * 11 10 9 35 35 H 1.09001 * 109.45634 * 301.34340 * 12 11 10 36 36 H 1.09001 * 109.45724 * 181.38513 * 12 11 10 37 37 H 0.97005 * 119.99799 * 24.84400 * 15 13 12 38 38 H 1.09000 * 109.46807 * 60.00305 * 18 16 15 39 39 H 1.09000 * 109.46898 * 299.99989 * 18 16 15 40 40 H 1.08004 * 119.06265 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.06331 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.23936 * 359.42221 * 24 23 22 43 43 H 1.08002 * 119.45417 * 179.74325 * 25 24 23 44 44 H 1.08000 * 119.48993 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.25666 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.58931 * 6.58395 * 29 9 7 47 47 H 1.08997 * 109.58118 * 246.15346 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2798 9 7 1.3723 -2.3612 -0.3531 10 6 1.8194 -3.6547 0.1810 11 6 2.0752 -4.6097 -0.9893 12 6 0.8199 -4.6896 -1.8609 13 6 0.5018 -3.3044 -2.4284 14 1 1.3502 -2.9460 -3.0114 15 7 -0.6817 -3.3882 -3.2879 16 6 -0.8695 -2.4806 -4.2664 17 8 -0.0585 -1.5947 -4.4357 18 6 -2.0871 -2.5663 -5.1502 19 6 -2.0585 -1.4438 -6.1552 20 6 -2.7212 -0.2785 -5.9142 21 7 -2.7126 0.7241 -6.7816 22 6 -2.0708 0.6688 -7.9253 23 6 -1.3596 -0.4907 -8.2730 24 6 -0.6520 -0.5974 -9.4807 25 6 0.0252 -1.7447 -9.7623 26 6 0.0325 -2.8141 -8.8684 27 6 -0.6376 -2.7440 -7.6846 28 6 -1.3462 -1.5780 -7.3606 29 6 0.2281 -2.3348 -1.2745 30 1 -0.4850 0.8400 -0.0004 31 1 2.7399 -3.5173 0.7485 32 1 1.0470 -4.0693 0.8288 33 1 2.9092 -4.2393 -1.5855 34 1 2.3152 -5.6007 -0.6043 35 1 -0.0193 -5.0366 -1.2580 36 1 0.9909 -5.3874 -2.6807 37 1 -1.3301 -4.0968 -3.1527 38 1 -2.9860 -2.4846 -4.5391 39 1 -2.0894 -3.5223 -5.6738 40 1 -3.2694 -0.1681 -4.9901 41 1 -2.0930 1.5123 -8.5994 42 1 -0.6484 0.2228 -10.1833 43 1 0.5659 -1.8273 -10.6936 44 1 0.5786 -3.7118 -9.1178 45 1 -0.6233 -3.5800 -7.0008 46 1 0.0986 -1.3264 -1.6676 47 1 -0.6741 -2.6417 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007527468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 10.827868 kcal Electronic energy + Delta-G solvation = -29318.767080 eV Core-core repulsion = 25465.468840 eV Total energy + Delta-G solvation = -3853.298240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00722 -40.74402 -38.95766 -38.24523 -35.82260 -35.13130 -34.43815 -32.17801 -31.96556 -31.43661 -30.57144 -28.59501 -27.26027 -24.99380 -24.53438 -23.99955 -23.70292 -22.38412 -21.35823 -20.77783 -18.91963 -18.78345 -18.55536 -18.04216 -17.49795 -17.10281 -16.67745 -16.12858 -15.82874 -15.64663 -15.34458 -15.31479 -15.26091 -14.87384 -14.67860 -14.56595 -14.33129 -14.15263 -13.98454 -13.66891 -13.47093 -13.08598 -12.99813 -12.95815 -12.71339 -12.68055 -12.47302 -12.25694 -12.07910 -11.96257 -11.70864 -11.60589 -11.27170 -11.17547 -10.71783 -10.59824 -10.47264 -10.06544 -10.01920 -8.98591 -8.71860 -7.93079 -5.38009 -0.60345 -0.05073 0.93843 1.35369 1.40578 1.48437 1.70170 2.06916 2.31117 2.46078 3.10875 3.23809 3.36142 3.56722 3.71528 3.75865 3.79686 3.90286 3.96394 4.00142 4.11689 4.14189 4.24848 4.28792 4.33548 4.38180 4.48168 4.55615 4.62102 4.68575 4.79978 4.81735 4.91804 4.94071 5.08238 5.10558 5.14079 5.19769 5.23182 5.33608 5.46889 5.48140 5.50354 5.52082 5.59381 5.66633 5.78255 5.94596 6.33130 6.67328 6.97727 7.08995 7.39665 7.82923 8.30791 9.11342 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003457 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.124830 B = 8096.544424 C = 9336.438493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.048 4.048 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.302 1.302 6 H -0.283 1.283 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.134 3.866 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.133 3.867 14 H 0.046 0.954 15 N -0.707 5.707 16 C 0.507 3.493 17 O -0.584 6.584 18 C -0.088 4.088 19 C -0.106 4.106 20 C 0.061 3.939 21 N -0.517 5.517 22 C 0.135 3.865 23 C -0.133 4.133 24 C -0.089 4.089 25 C -0.123 4.123 26 C -0.096 4.096 27 C -0.129 4.129 28 C -0.031 4.031 29 C 0.179 3.821 30 H 0.246 0.754 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.192 0.808 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.136 0.864 46 H 0.040 0.960 47 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -12.796 -19.950 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.244 4.244 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.230 1.230 6 H -0.210 1.210 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.026 3.974 14 H 0.064 0.936 15 N -0.360 5.360 16 C 0.294 3.706 17 O -0.463 6.463 18 C -0.128 4.128 19 C -0.108 4.108 20 C -0.081 4.081 21 N -0.224 5.224 22 C -0.036 4.036 23 C -0.135 4.135 24 C -0.109 4.109 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.146 4.146 28 C -0.036 4.036 29 C 0.052 3.948 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.209 0.791 42 H 0.180 0.820 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.154 0.846 46 H 0.058 0.942 47 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -4.660 -11.360 -19.661 23.180 hybrid contribution 0.382 0.567 0.521 0.859 sum -4.278 -10.793 -19.140 22.386 Atomic orbital electron populations 1.70163 1.06604 1.25416 1.55267 1.25727 0.96009 1.01377 1.01306 0.85368 0.79114 0.80474 0.76584 1.18582 1.22993 1.20980 1.19526 0.93034 0.86294 1.40522 0.91476 1.44267 1.36076 1.02658 1.50478 1.21191 0.97515 0.85595 0.94732 1.21902 0.97122 1.00083 0.97037 1.21633 0.98975 0.93876 0.99833 1.21437 0.87195 0.97834 0.90905 0.93600 1.45862 1.25970 1.31467 1.32671 1.21103 0.87623 0.80864 0.80999 1.90762 1.47783 1.35930 1.71831 1.20644 0.97038 0.99577 0.95549 1.20212 0.98349 0.97128 0.95160 1.22190 0.98803 0.88914 0.98240 1.67380 1.20361 1.30437 1.04242 1.23724 0.90366 0.96653 0.92898 1.19349 1.01509 0.95424 0.97240 1.21354 0.95177 0.99589 0.94776 1.21354 0.99046 0.92821 1.00838 1.21400 0.97006 1.00082 0.93050 1.21147 0.98203 0.96924 0.98365 1.18297 0.96472 0.95356 0.93492 1.20791 0.87991 0.97517 0.88497 0.94494 0.92795 0.95930 0.93257 0.88364 0.90555 0.89369 0.74697 0.85144 0.84213 0.83306 0.79107 0.81992 0.82332 0.82915 0.84618 0.94188 0.98167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.91 11.19 21.65 0.24 -58.66 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 3 Si 0.96 49.02 29.59 68.60 2.03 51.05 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.26 -15.43 9.59 84.03 0.81 -14.63 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -31.98 2.99 -699.10 -2.09 -34.07 16 10 C 0.13 5.47 6.52 86.37 0.56 6.03 16 11 C -0.12 -3.75 6.08 30.67 0.19 -3.57 16 12 C -0.11 -2.98 5.35 30.62 0.16 -2.81 16 13 C 0.13 5.09 2.60 45.07 0.12 5.20 16 14 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 15 N -0.71 -21.29 5.08 -442.17 -2.25 -23.54 16 16 C 0.51 17.15 7.79 87.66 0.68 17.83 16 17 O -0.58 -27.43 15.70 -3.04 -0.05 -27.48 16 18 C -0.09 -2.05 5.31 29.10 0.15 -1.89 16 19 C -0.11 -3.09 4.40 -19.75 -0.09 -3.18 16 20 C 0.06 1.96 10.72 84.11 0.90 2.86 16 21 N -0.52 -16.60 10.30 -195.54 -2.01 -18.61 16 22 C 0.13 3.50 11.05 85.30 0.94 4.44 16 23 C -0.13 -3.36 5.74 -21.31 -0.12 -3.49 16 24 C -0.09 -1.60 9.81 22.31 0.22 -1.38 16 25 C -0.12 -1.90 9.94 22.06 0.22 -1.68 16 26 C -0.10 -1.68 9.95 22.07 0.22 -1.46 16 27 C -0.13 -2.89 9.33 22.28 0.21 -2.69 16 28 C -0.03 -0.86 5.75 -21.28 -0.12 -0.98 16 29 C 0.18 9.06 4.89 86.36 0.42 9.48 16 30 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.42 8.52 8.60 -92.70 -0.80 7.73 16 38 H 0.13 2.40 8.06 -2.39 -0.02 2.38 16 39 H 0.14 2.11 6.83 -2.39 -0.02 2.09 16 40 H 0.15 4.50 8.05 -2.91 -0.02 4.48 16 41 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.14 2.63 6.65 -2.91 -0.02 2.61 16 46 H 0.04 2.46 6.04 -2.39 -0.01 2.45 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -87.40 382.91 1.95 -85.44 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.19 Total: 20.28 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.89 Total: 5.60 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -6.11 Total: -134.89 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.05 Total: -27.48 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -87.40 1.95 -85.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007527468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.272 kcal (2) G-P(sol) polarization free energy of solvation -87.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds