Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47184 * 299.99610 * 3 2 1 6 6 H 1.48495 * 109.47270 * 59.99855 * 3 2 1 7 7 C 1.38804 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 197.36743 * 7 2 1 9 9 N 1.36945 * 120.00062 * 17.36975 * 7 2 1 10 10 C 1.46923 * 120.62717 * 27.66767 * 9 7 2 11 11 C 1.53193 * 108.77640 * 126.41569 * 10 9 7 12 12 C 1.53043 * 109.31126 * 54.63033 * 11 10 9 13 13 C 1.53037 * 109.53952 * 298.63764 * 12 11 10 14 14 H 1.09008 * 109.49766 * 301.38093 * 13 12 11 15 15 N 1.46499 * 109.50004 * 181.31859 * 13 12 11 16 16 C 1.34775 * 120.00308 * 154.99769 * 15 13 12 17 17 O 1.21279 * 119.99929 * 0.02562 * 16 15 13 18 18 C 1.50708 * 119.99906 * 180.27264 * 16 15 13 19 19 C 1.50695 * 109.46836 * 179.72459 * 18 16 15 20 20 C 1.36169 * 120.19847 * 265.00342 * 19 18 16 21 21 C 1.39316 * 120.87456 * 179.97438 * 20 19 18 22 22 C 1.36111 * 121.06395 * 0.02562 * 21 20 19 23 23 C 1.40553 * 119.74869 * 359.97438 * 22 21 20 24 24 N 1.33694 * 121.07951 * 179.97438 * 23 22 21 25 25 C 1.31078 * 121.31783 * 180.02562 * 24 23 22 26 26 C 1.39343 * 121.75967 * 359.97438 * 25 24 23 27 27 C 1.36576 * 119.93170 * 0.02562 * 26 25 24 28 28 C 1.40393 * 120.19235 * 84.72354 * 19 18 16 29 29 C 1.46919 * 120.63036 * 207.68831 * 9 7 2 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58968 * 6.62720 * 10 9 7 32 32 H 1.08998 * 109.70662 * 246.26971 * 10 9 7 33 33 H 1.09001 * 109.49528 * 294.68622 * 11 10 9 34 34 H 1.08992 * 109.50168 * 174.58530 * 11 10 9 35 35 H 1.08999 * 109.45806 * 178.61541 * 12 11 10 36 36 H 1.09002 * 109.45111 * 58.65378 * 12 11 10 37 37 H 0.97006 * 119.99723 * 334.99586 * 15 13 12 38 38 H 1.08993 * 109.47175 * 299.72879 * 18 16 15 39 39 H 1.09001 * 109.46617 * 59.73130 * 18 16 15 40 40 H 1.08005 * 119.56480 * 359.97438 * 20 19 18 41 41 H 1.07990 * 119.46790 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.12707 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.12231 * 180.02562 * 25 24 23 44 44 H 1.07991 * 120.03134 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.91855 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.58645 * 113.80074 * 29 9 7 47 47 H 1.08998 * 109.59125 * 353.37764 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2740 11 6 0.5007 -3.3053 -2.4275 12 6 0.8185 -4.6903 -1.8592 13 6 2.0741 -4.6103 -0.9880 14 1 2.9082 -4.2411 -1.5848 15 7 2.3956 -5.9424 -0.4699 16 6 3.6626 -6.2424 -0.1217 17 8 4.5365 -5.4094 -0.2367 18 6 3.9943 -7.6148 0.4054 19 6 5.4677 -7.6925 0.7117 20 6 6.3336 -8.1946 -0.2114 21 6 7.6985 -8.2725 0.0567 22 6 8.2056 -7.8504 1.2472 23 6 7.3437 -7.3259 2.2257 24 7 7.8131 -6.9040 3.4043 25 6 7.0134 -6.4146 4.3204 26 6 5.6394 -6.3087 4.1140 27 6 5.0941 -6.7216 2.9318 28 6 5.9565 -7.2423 1.9484 29 6 1.8192 -3.6546 0.1818 30 1 -0.4849 0.8401 -0.0004 31 1 0.0987 -1.3266 -1.6675 32 1 -0.6757 -2.6395 -0.7461 33 1 1.3495 -2.9478 -3.0105 34 1 -0.3800 -3.3675 -3.0666 35 1 0.9889 -5.3886 -2.6786 36 1 -0.0207 -5.0364 -1.2558 37 1 1.6965 -6.6085 -0.3776 38 1 3.4236 -7.8024 1.3149 39 1 3.7391 -8.3634 -0.3446 40 1 5.9574 -8.5370 -1.1642 41 1 8.3648 -8.6751 -0.6918 42 1 9.2663 -7.9181 1.4392 43 1 7.4308 -6.0837 5.2600 44 1 5.0065 -5.9007 4.8880 45 1 4.0314 -6.6465 2.7547 46 1 1.0467 -4.0685 0.8300 47 1 2.7398 -3.5172 0.7488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007916406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 35.881853 kcal Electronic energy + Delta-G solvation = -29047.617845 eV Core-core repulsion = 25195.406027 eV Total energy + Delta-G solvation = -3852.211817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09328 -39.60931 -37.62852 -37.02817 -34.36466 -34.15388 -32.46958 -31.43964 -30.64077 -30.47819 -29.09853 -27.28854 -25.29797 -24.34818 -23.70917 -22.51383 -22.10399 -21.09967 -20.07024 -19.30094 -18.27135 -17.23486 -17.10229 -16.89784 -16.77035 -15.63739 -15.14834 -14.75960 -14.71914 -14.43234 -14.35111 -14.00195 -13.88258 -13.59132 -13.51756 -13.25973 -13.14523 -13.02272 -12.43299 -12.41432 -12.13044 -11.90121 -11.73872 -11.71217 -11.35981 -11.10273 -10.90940 -10.79791 -10.57627 -10.28007 -10.22654 -9.96755 -9.91770 -9.64852 -9.61702 -9.51104 -8.86124 -8.83934 -8.41185 -8.28206 -6.68619 -5.79245 -3.21254 0.27658 0.74531 1.88022 2.78567 2.79101 3.37869 3.39138 3.46822 3.51544 4.03237 4.18741 4.29221 4.51784 4.57659 4.68216 4.68631 4.90975 4.93819 5.00561 5.09056 5.20192 5.26313 5.27926 5.36671 5.40488 5.51909 5.60362 5.69268 5.70477 5.83373 5.90514 5.95889 6.05821 6.13526 6.21402 6.23350 6.32114 6.43227 6.50734 6.59088 6.64548 6.66877 6.74012 6.81687 6.96779 7.34085 7.63363 7.70993 7.80806 7.83112 8.40528 8.46981 9.21585 9.83813 10.39030 11.29451 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003036 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.623417 B = 9220.966687 C =10512.142085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.085 0.915 15 N -0.724 5.724 16 C 0.508 3.492 17 O -0.524 6.524 18 C -0.108 4.108 19 C -0.037 4.037 20 C -0.108 4.108 21 C -0.097 4.097 22 C -0.097 4.097 23 C 0.126 3.874 24 N -0.477 5.477 25 C 0.130 3.870 26 C -0.175 4.175 27 C -0.052 4.052 28 C -0.084 4.084 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.016 0.984 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -20.897 1.791 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.103 0.897 15 N -0.375 5.375 16 C 0.293 3.707 17 O -0.399 6.399 18 C -0.148 4.148 19 C -0.038 4.038 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.115 4.115 23 C 0.005 3.995 24 N -0.185 5.185 25 C -0.042 4.042 26 C -0.195 4.195 27 C -0.078 4.078 28 C -0.086 4.086 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.228 0.772 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.034 0.966 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.627 -20.214 1.774 22.050 hybrid contribution -1.003 0.708 -0.088 1.231 sum 7.624 -19.506 1.685 21.011 Atomic orbital electron populations 1.70051 1.05231 1.25382 1.54184 1.25008 0.95290 0.98374 1.00897 0.86232 0.79566 0.83839 0.77272 1.20158 1.21492 1.21693 1.19263 0.92829 0.84690 1.41156 0.91570 1.44003 1.35609 1.01060 1.50372 1.20837 0.88548 0.98604 0.87877 1.22182 1.00433 0.95216 1.00139 1.21671 0.96739 0.98571 0.98237 1.21744 0.97756 0.81305 0.97144 0.89684 1.46155 1.09071 1.15926 1.66336 1.20350 0.82850 0.89102 0.78403 1.90782 1.46810 1.49765 1.52524 1.20753 0.93910 0.96628 1.03534 1.19055 0.94303 0.97416 0.93066 1.20744 0.93256 0.99834 0.98731 1.20833 0.95245 0.98879 0.96754 1.20761 0.99657 0.98595 0.92501 1.18837 0.90528 0.97628 0.92469 1.68034 1.38741 1.10610 1.01130 1.22945 0.90240 0.93382 0.97676 1.21900 0.96909 1.01925 0.98775 1.21483 1.00079 0.93883 0.92327 1.18601 0.94233 1.00665 0.95085 1.21165 0.97769 0.86862 0.92629 0.93716 0.89256 0.96317 0.92447 0.92711 0.93133 0.92262 0.77249 0.87907 0.87641 0.85616 0.85262 0.84864 0.82446 0.84406 0.84680 0.96602 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.19 29.59 -169.99 -5.03 17.16 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -14.92 2.99 -172.33 -0.52 -15.43 16 10 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.78 5.35 -26.69 -0.14 -1.92 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.02 16 14 H 0.09 1.74 7.58 -51.92 -0.39 1.35 16 15 N -0.72 -9.56 5.08 -53.69 -0.27 -9.84 16 16 C 0.51 7.19 7.79 -10.98 -0.09 7.10 16 17 O -0.52 -10.17 15.70 5.56 0.09 -10.08 16 18 C -0.11 -1.05 5.24 -29.03 -0.15 -1.20 16 19 C -0.04 -0.44 4.38 -104.56 -0.46 -0.90 16 20 C -0.11 -1.15 9.58 -39.92 -0.38 -1.53 16 21 C -0.10 -0.99 9.94 -39.95 -0.40 -1.39 16 22 C -0.10 -1.14 9.98 -39.47 -0.39 -1.53 16 23 C 0.13 1.76 6.60 -84.86 -0.56 1.19 16 24 N -0.48 -6.55 10.34 -10.97 -0.11 -6.67 16 25 C 0.13 1.48 11.15 -17.46 -0.19 1.28 16 26 C -0.18 -1.92 10.03 -39.77 -0.40 -2.32 16 27 C -0.05 -0.63 9.36 -39.22 -0.37 -1.00 16 28 C -0.08 -1.12 5.74 -106.80 -0.61 -1.74 16 29 C 0.14 3.09 6.09 -3.72 -0.02 3.07 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 3.76 8.60 -40.82 -0.35 3.41 16 38 H 0.10 0.78 6.73 -51.93 -0.35 0.43 16 39 H 0.11 0.70 8.04 -51.93 -0.42 0.29 16 40 H 0.13 1.05 8.05 -52.48 -0.42 0.62 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 44 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.14 1.43 6.57 -52.49 -0.34 1.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -35.28 382.76 -10.99 -46.28 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.78 Total: 3.37 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.76 Total: -4.92 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.28 Total: -57.58 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.28 -10.99 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007916406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.161 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds