Wall clock time and date at job start Sat Apr 11 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99983 * 2 1 4 4 H 1.48491 * 109.47228 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47283 * 30.00310 * 3 2 1 6 6 H 1.48501 * 109.47105 * 149.99882 * 3 2 1 7 7 C 1.38813 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00333 * 197.36487 * 7 2 1 9 9 N 1.36940 * 119.99526 * 17.36249 * 7 2 1 10 10 C 1.46927 * 120.63148 * 207.66442 * 9 7 2 11 11 C 1.53187 * 108.77594 * 233.63309 * 10 9 7 12 12 C 1.53040 * 109.31333 * 305.36432 * 11 10 9 13 13 C 1.53038 * 109.53999 * 61.36507 * 12 11 10 14 14 H 1.08999 * 109.52476 * 58.60189 * 13 12 11 15 15 N 1.46501 * 109.50054 * 178.68345 * 13 12 11 16 16 C 1.34766 * 120.00095 * 204.83874 * 15 13 12 17 17 O 1.21285 * 120.00268 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00241 * 180.02562 * 16 15 13 19 19 C 1.50693 * 109.47492 * 180.02562 * 18 16 15 20 20 C 1.36119 * 120.12532 * 264.72533 * 19 18 16 21 21 C 1.39312 * 121.06512 * 179.75853 * 20 19 18 22 22 C 1.36169 * 120.86932 * 0.50027 * 21 20 19 23 23 C 1.40385 * 119.61742 * 359.76299 * 22 21 20 24 24 C 1.40776 * 121.38837 * 179.97438 * 23 22 21 25 25 C 1.36581 * 118.14957 * 180.02562 * 24 23 22 26 26 C 1.39334 * 119.94302 * 0.02562 * 25 24 23 27 27 N 1.31085 * 121.74869 * 0.02562 * 26 25 24 28 28 C 1.33689 * 121.31956 * 359.96216 * 27 26 25 29 29 C 1.46924 * 120.62999 * 27.68933 * 9 7 2 30 30 H 0.97000 * 119.99382 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58445 * 353.41927 * 10 9 7 32 32 H 1.08994 * 109.58743 * 113.84113 * 10 9 7 33 33 H 1.09002 * 109.50095 * 65.31837 * 11 10 9 34 34 H 1.08999 * 109.49830 * 185.38007 * 11 10 9 35 35 H 1.09001 * 109.45934 * 301.34743 * 12 11 10 36 36 H 1.08997 * 109.45853 * 181.38836 * 12 11 10 37 37 H 0.97000 * 119.99727 * 24.84262 * 15 13 12 38 38 H 1.09000 * 109.47126 * 300.00105 * 18 16 15 39 39 H 1.09005 * 109.47038 * 59.99736 * 18 16 15 40 40 H 1.08004 * 119.46293 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.56643 * 180.23667 * 21 20 19 42 42 H 1.08008 * 120.19055 * 179.79042 * 22 21 20 43 43 H 1.08000 * 120.92834 * 0.02562 * 24 23 22 44 44 H 1.08005 * 120.02816 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.12535 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.58874 * 6.57875 * 29 9 7 47 47 H 1.09004 * 109.58679 * 246.15672 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3529 10 6 1.8196 -3.6547 0.1815 11 6 2.0753 -4.6098 -0.9886 12 6 0.8198 -4.6899 -1.8601 13 6 0.5016 -3.3048 -2.4279 14 1 1.3498 -2.9465 -3.0110 15 7 -0.6820 -3.3887 -3.2872 16 6 -0.8699 -2.4813 -4.2657 17 8 -0.0589 -1.5956 -4.4354 18 6 -2.0877 -2.5672 -5.1493 19 6 -2.0592 -1.4449 -6.1546 20 6 -2.7300 -0.2871 -5.9050 21 6 -2.7129 0.7648 -6.8183 22 6 -2.0314 0.6595 -7.9925 23 6 -1.3326 -0.5222 -8.2856 24 6 -0.6164 -0.6714 -9.4883 25 6 0.0395 -1.8495 -9.7058 26 6 -0.0134 -2.8618 -8.7497 27 7 -0.6822 -2.7199 -7.6313 28 6 -1.3456 -1.5922 -7.3565 29 6 0.2281 -2.3349 -1.2740 30 1 -0.4849 0.8401 -0.0004 31 1 2.7401 -3.5171 0.7487 32 1 1.0472 -4.0691 0.8294 33 1 2.9091 -4.2395 -1.5850 34 1 2.3153 -5.6008 -0.6035 35 1 -0.0193 -5.0367 -1.2571 36 1 0.9907 -5.3879 -2.6797 37 1 -1.3304 -4.0973 -3.1517 38 1 -2.0901 -3.5233 -5.6728 39 1 -2.9865 -2.4853 -4.5381 40 1 -3.2816 -0.1809 -4.9826 41 1 -3.2506 1.6742 -6.5939 42 1 -2.0283 1.4807 -8.6942 43 1 -0.5863 0.1236 -10.2187 44 1 0.5987 -1.9964 -10.6180 45 1 0.5097 -3.7881 -8.9355 46 1 0.0985 -1.3266 -1.6672 47 1 -0.6741 -2.6417 -0.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008113655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:22 Heat of formation + Delta-G solvation = 36.055224 kcal Electronic energy + Delta-G solvation = -29311.599987 eV Core-core repulsion = 25459.395687 eV Total energy + Delta-G solvation = -3852.204300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95288 -39.25588 -37.44494 -36.91173 -34.15224 -33.89570 -32.60135 -31.40253 -30.57314 -29.98731 -29.05555 -27.09450 -25.21168 -24.24397 -23.62473 -22.38948 -22.02077 -21.01859 -19.76901 -19.16443 -18.31695 -17.01110 -16.88468 -16.70023 -16.53342 -15.45044 -15.04047 -14.74883 -14.49399 -14.33252 -14.07472 -13.94782 -13.85956 -13.51953 -13.20813 -13.11567 -12.98039 -12.90599 -12.34761 -12.26519 -11.91221 -11.80626 -11.71582 -11.56625 -11.24896 -10.96546 -10.69481 -10.65259 -10.52236 -10.41172 -10.19177 -9.91269 -9.88399 -9.51317 -9.45470 -9.22529 -8.78341 -8.40488 -8.36792 -8.16953 -6.60477 -5.70839 -3.13711 0.35081 0.81041 1.94706 2.90225 3.24534 3.45935 3.52423 3.53725 3.70397 4.11923 4.29093 4.45092 4.58479 4.64137 4.74553 4.82557 4.99769 5.11228 5.23977 5.29872 5.36040 5.41152 5.42809 5.48357 5.59033 5.60997 5.70077 5.75765 5.80383 5.90450 5.99153 6.04394 6.15654 6.21902 6.35979 6.39835 6.43098 6.47774 6.48119 6.58990 6.76871 6.83679 6.84478 7.00934 7.09000 7.38220 7.79154 7.88486 7.89864 8.09275 8.53341 8.84579 9.28291 9.92386 10.47198 11.37042 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003468 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.902337 B = 8070.971722 C = 9318.108464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.119 3.881 14 H 0.079 0.921 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.527 6.527 18 C -0.098 4.098 19 C -0.032 4.032 20 C -0.092 4.092 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.101 4.101 24 C -0.059 4.059 25 C -0.180 4.180 26 C 0.126 3.874 27 N -0.465 5.465 28 C 0.142 3.858 29 C 0.168 3.832 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.391 0.609 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.094 0.906 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 -6.701 -18.160 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.097 0.903 15 N -0.374 5.374 16 C 0.304 3.696 17 O -0.402 6.402 18 C -0.138 4.138 19 C -0.033 4.033 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.085 4.085 25 C -0.199 4.199 26 C -0.047 4.047 27 N -0.173 5.173 28 C 0.021 3.979 29 C 0.041 3.959 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.224 0.776 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.173 0.827 46 H 0.112 0.888 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.542 -6.522 -17.541 19.825 hybrid contribution 0.193 1.232 -0.597 1.382 sum -6.349 -5.291 -18.138 19.932 Atomic orbital electron populations 1.70023 1.05309 1.25414 1.53543 1.25003 0.95249 0.98388 1.00537 0.86322 0.79108 0.83753 0.77798 1.21321 1.21770 1.20408 1.19161 0.92730 0.84888 1.41747 0.91639 1.43974 1.36058 1.01583 1.49576 1.20949 0.97655 0.86900 0.92875 1.22001 0.97059 0.99255 0.98774 1.21666 0.98786 0.96198 0.98686 1.21905 0.87233 0.96647 0.92868 0.90302 1.46022 1.26357 1.31125 1.33904 1.20183 0.87130 0.81862 0.80429 1.90748 1.45456 1.33932 1.70099 1.20571 0.98116 0.99137 0.95934 1.18965 0.95990 0.95617 0.92706 1.20841 0.98892 0.92192 0.99302 1.20889 0.99005 0.98755 0.93777 1.20922 0.97328 0.96318 0.97848 1.18789 1.00083 0.95739 0.95726 1.21426 0.94134 0.97507 0.95460 1.21843 1.01775 0.94956 1.01376 1.22918 0.94548 0.98573 0.88639 1.67971 1.07086 1.23241 1.18962 1.18598 0.95793 0.89590 0.93928 1.21086 0.88581 0.99015 0.87231 0.93742 0.92693 0.96426 0.92208 0.92699 0.92320 0.93144 0.77624 0.87492 0.88245 0.85091 0.85398 0.85434 0.84638 0.84781 0.82659 0.88796 0.96620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 11.19 55.49 0.62 -26.66 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 23.06 29.59 -169.99 -5.03 18.03 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.26 -7.38 9.59 -15.06 -0.14 -7.52 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -15.42 2.99 -172.32 -0.52 -15.93 16 10 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 11 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 12 C -0.12 -1.94 5.35 -26.69 -0.14 -2.09 16 13 C 0.12 2.43 2.60 -67.81 -0.18 2.25 16 14 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.72 -12.40 5.08 -53.69 -0.27 -12.67 16 16 C 0.52 9.63 7.79 -10.99 -0.09 9.55 16 17 O -0.53 -12.56 15.70 5.55 0.09 -12.47 16 18 C -0.10 -1.36 5.56 -29.04 -0.16 -1.53 16 19 C -0.03 -0.48 4.38 -104.51 -0.46 -0.94 16 20 C -0.09 -1.26 9.57 -39.94 -0.38 -1.64 16 21 C -0.11 -1.27 9.95 -39.93 -0.40 -1.66 16 22 C -0.11 -1.22 9.77 -39.52 -0.39 -1.61 16 23 C -0.10 -1.35 5.74 -106.81 -0.61 -1.96 16 24 C -0.06 -0.62 9.90 -39.22 -0.39 -1.01 16 25 C -0.18 -1.76 10.03 -39.77 -0.40 -2.16 16 26 C 0.13 1.47 11.15 -17.46 -0.19 1.28 16 27 N -0.47 -6.95 9.51 -10.98 -0.10 -7.06 16 28 C 0.14 2.19 6.58 -84.86 -0.56 1.63 16 29 C 0.17 4.22 4.89 -3.71 -0.02 4.20 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.39 5.19 8.60 -40.82 -0.35 4.84 16 38 H 0.11 1.33 7.71 -51.93 -0.40 0.93 16 39 H 0.10 1.11 8.04 -51.93 -0.42 0.69 16 40 H 0.13 1.58 8.04 -52.48 -0.42 1.16 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.09 2.78 6.03 -51.93 -0.31 2.47 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -36.98 385.01 -11.10 -48.08 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.91 Total: 5.41 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.78 Total: -2.53 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.27 Total: -62.31 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.03 Total: 18.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.98 -11.10 -48.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.139 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds