Wall clock time and date at job start Sat Apr 11 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48498 * 109.47059 * 92.96247 * 3 2 1 5 5 H 1.48503 * 109.47024 * 212.96488 * 3 2 1 6 6 H 1.48496 * 109.47060 * 332.96006 * 3 2 1 7 7 C 1.38807 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 19.01879 * 7 2 1 9 9 N 1.36940 * 120.00375 * 199.02082 * 7 2 1 10 10 C 1.46839 * 120.38082 * 210.43373 * 9 7 2 11 11 C 1.52875 * 109.07233 * 236.84841 * 10 9 7 12 12 C 1.53181 * 108.82510 * 308.91731 * 11 10 9 13 13 C 1.52844 * 117.65478 * 269.84625 * 12 11 10 14 14 C 1.52819 * 117.71305 * 200.99040 * 12 11 10 15 15 H 1.08994 * 117.49988 * 215.09830 * 14 12 11 16 16 N 1.46502 * 117.50227 * 0.13362 * 14 12 11 17 17 C 1.34771 * 120.00238 * 205.00330 * 16 14 12 18 18 O 1.21578 * 120.00070 * 359.97438 * 17 16 14 19 19 C 1.47656 * 120.00363 * 179.97438 * 17 16 14 20 20 C 1.40211 * 119.96919 * 359.72706 * 19 17 16 21 21 C 1.36322 * 120.66575 * 179.71122 * 20 19 17 22 22 C 1.39366 * 120.23694 * 0.56084 * 21 20 19 23 23 N 1.37396 * 133.25090 * 179.71923 * 22 21 20 24 24 H 0.97000 * 125.00478 * 359.97438 * 23 22 21 25 25 C 1.36854 * 109.98451 * 180.02562 * 23 22 21 26 26 C 1.34195 * 109.96117 * 359.97438 * 25 23 22 27 27 C 1.40884 * 119.63838 * 359.72127 * 22 21 20 28 28 C 1.39148 * 119.97757 * 179.97438 * 19 17 16 29 29 C 1.53180 * 115.07803 * 55.31602 * 12 11 10 30 30 C 1.46844 * 120.37606 * 30.69922 * 9 7 2 31 31 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58204 * 356.68377 * 10 9 7 33 33 H 1.09000 * 109.58060 * 117.09112 * 10 9 7 34 34 H 1.08998 * 109.66431 * 189.04710 * 11 10 9 35 35 H 1.08996 * 109.44712 * 68.65348 * 11 10 9 36 36 H 1.09005 * 117.50506 * 359.75868 * 13 12 11 37 37 H 1.09004 * 117.50864 * 144.78428 * 13 12 11 38 38 H 0.97005 * 120.00024 * 24.99898 * 16 14 12 39 39 H 1.07998 * 119.66608 * 359.97309 * 20 19 17 40 40 H 1.07997 * 119.87832 * 180.25496 * 21 20 19 41 41 H 1.07999 * 125.02252 * 180.02562 * 25 23 22 42 42 H 1.07998 * 126.54454 * 179.97438 * 26 25 23 43 43 H 1.08005 * 120.29998 * 0.02562 * 28 19 17 44 44 H 1.08998 * 109.59110 * 184.76466 * 29 12 11 45 45 H 1.08998 * 109.58959 * 64.33257 * 29 12 11 46 46 H 1.08999 * 109.57594 * 242.91248 * 30 9 7 47 47 H 1.08997 * 109.58075 * 3.30970 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5603 2.0103 1.3982 5 1 3.5150 1.4591 -0.7618 6 1 1.4177 2.6699 -0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5146 -2.1118 -0.3057 9 7 3.3236 -1.2347 0.3859 10 6 4.2427 -2.2248 -0.1895 11 6 4.8639 -3.0458 0.9405 12 6 5.4357 -2.0882 1.9906 13 6 6.8891 -1.6438 1.8289 14 6 6.5076 -2.6285 2.9364 15 1 6.5075 -2.2579 3.9614 16 7 6.9152 -4.0258 2.7693 17 6 7.4352 -4.7051 3.8107 18 8 7.5666 -4.1583 4.8886 19 6 7.8456 -6.1135 3.6425 20 6 7.6885 -6.7453 2.4007 21 6 8.0679 -8.0432 2.2280 22 6 8.6079 -8.7640 3.2916 23 7 9.0645 -10.0535 3.4194 24 1 9.0749 -10.7132 2.7083 25 6 9.5015 -10.2704 4.6981 26 6 9.3487 -9.1558 5.4296 27 6 8.7654 -8.1422 4.5459 28 6 8.3829 -6.8143 4.7178 29 6 4.4388 -1.0694 2.5514 30 6 3.8275 -0.2837 1.3849 31 1 -0.4850 0.8400 -0.0004 32 1 3.6941 -2.8861 -0.8602 33 1 5.0313 -1.7135 -0.7418 34 1 5.6630 -3.6715 0.5429 35 1 4.0982 -3.6732 1.3966 36 1 7.4434 -2.0356 0.9759 37 1 7.1400 -0.6252 2.1248 38 1 6.8107 -4.4620 1.9092 39 1 7.2667 -6.1968 1.5715 40 1 7.9450 -8.5161 1.2648 41 1 9.9098 -11.2008 5.0641 42 1 9.6057 -9.0298 6.4710 43 1 8.5016 -6.3329 5.6774 44 1 4.9557 -0.3836 3.2227 45 1 3.6501 -1.5903 3.0942 46 1 4.5895 0.3513 0.9330 47 1 3.0057 0.3322 1.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016802350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:31 Heat of formation + Delta-G solvation = 77.166507 kcal Electronic energy + Delta-G solvation = -28376.005013 eV Core-core repulsion = 24525.583432 eV Total energy + Delta-G solvation = -3850.421581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64098 -40.07396 -38.65982 -36.78799 -35.70801 -33.22449 -32.34232 -31.75014 -30.54072 -29.94800 -29.16965 -28.53767 -24.36038 -24.17715 -23.00501 -22.66827 -21.85695 -21.23317 -20.93489 -20.26943 -18.54174 -18.39378 -17.56643 -16.68953 -16.36346 -16.06978 -15.28062 -15.06646 -14.82047 -14.58958 -14.37296 -14.22057 -14.06962 -13.88955 -13.67991 -13.49372 -13.11716 -12.94075 -12.89680 -12.70589 -12.29510 -12.12811 -11.92525 -11.83663 -11.67128 -11.24162 -11.14422 -10.73690 -10.59149 -10.33816 -10.18090 -10.05109 -9.93356 -9.75425 -9.51389 -9.40924 -8.75502 -8.60833 -8.39618 -8.14115 -6.89367 -5.93451 -3.31873 0.69261 0.90716 2.32248 2.68648 2.78502 3.05825 3.33253 3.49665 3.53384 3.69108 4.11892 4.29134 4.42391 4.54723 4.61983 4.65974 4.85017 4.90671 4.96978 5.00887 5.07615 5.16230 5.18691 5.31242 5.33483 5.44747 5.55709 5.70218 5.76106 5.87775 5.94552 5.96074 6.02709 6.08363 6.12398 6.18759 6.24465 6.33134 6.34387 6.39598 6.46022 6.55050 6.64658 6.70130 6.72896 6.75216 6.98022 7.05836 7.49870 8.02287 8.21093 8.36088 8.97733 9.74173 10.13375 11.22664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.002161 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.706065 B =12955.809502 C =13498.448850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.304 1.304 7 C -0.261 4.261 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.098 4.098 12 C -0.102 4.102 13 C -0.184 4.184 14 C 0.076 3.924 15 H 0.134 0.866 16 N -0.693 5.693 17 C 0.566 3.434 18 O -0.543 6.543 19 C -0.163 4.163 20 C -0.065 4.065 21 C -0.135 4.135 22 C 0.115 3.885 23 N -0.593 5.593 24 H 0.417 0.583 25 C 0.044 3.956 26 C -0.192 4.192 27 C -0.124 4.124 28 C 0.001 3.999 29 C -0.098 4.098 30 C 0.129 3.871 31 H 0.262 0.738 32 H 0.063 0.937 33 H 0.023 0.977 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.172 0.828 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.025 0.975 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.458 -19.985 6.232 29.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.232 1.232 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.223 4.223 14 C -0.029 4.029 15 H 0.152 0.848 16 N -0.342 5.342 17 C 0.354 3.646 18 O -0.422 6.422 19 C -0.168 4.168 20 C -0.085 4.085 21 C -0.156 4.156 22 C 0.007 3.993 23 N -0.196 5.196 24 H 0.254 0.746 25 C -0.081 4.081 26 C -0.217 4.217 27 C -0.128 4.128 28 C -0.019 4.019 29 C -0.138 4.138 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.190 0.810 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.398 -19.622 6.907 29.843 hybrid contribution 0.427 0.384 -0.816 0.998 sum 21.825 -19.237 6.091 29.724 Atomic orbital electron populations 1.69825 1.05757 1.26581 1.53050 1.25358 0.95239 0.97683 0.99230 0.86942 0.79701 0.84420 0.77296 1.21331 1.19766 1.23222 1.18905 0.84317 0.94428 1.41260 0.89942 1.44260 1.07530 1.37026 1.43936 1.20770 0.92450 0.91317 0.92802 1.21540 0.98981 0.96682 0.96558 1.21925 0.89902 0.99639 0.98886 1.23570 0.98468 0.99695 1.00549 1.21849 1.03088 0.80617 0.97387 0.84807 1.45288 1.63222 1.12171 1.13550 1.18120 0.76879 0.85744 0.83855 1.90757 1.55291 1.70035 1.26074 1.19596 1.07861 0.94225 0.95082 1.20648 0.97613 0.94035 0.96244 1.19658 1.04193 0.94486 0.97221 1.18441 0.99674 0.85173 0.96054 1.41803 1.55150 1.10855 1.11762 0.74630 1.21852 1.02305 1.00284 0.83665 1.21783 1.08008 0.92109 0.99788 1.19165 1.05708 0.94394 0.93555 1.20677 0.91689 0.91113 0.98391 1.21681 0.97137 0.96466 0.98482 1.21359 0.97174 0.92135 0.88997 0.92769 0.91804 0.95929 0.93268 0.91249 0.88866 0.88306 0.76378 0.85337 0.85585 0.81047 0.83229 0.84423 0.92526 0.91094 0.95728 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 2 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 3 Si 0.89 22.46 24.44 -169.99 -4.15 18.31 16 4 H -0.29 -6.94 6.39 56.52 0.36 -6.58 16 5 H -0.27 -6.83 7.02 56.52 0.40 -6.43 16 6 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 7 C -0.26 -7.24 9.98 -15.06 -0.15 -7.39 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 N -0.60 -14.15 2.68 -172.55 -0.46 -14.62 16 10 C 0.15 2.91 6.48 -3.92 -0.03 2.88 16 11 C -0.10 -1.52 5.36 -26.70 -0.14 -1.67 16 12 C -0.10 -1.58 1.94 -154.50 -0.30 -1.88 16 13 C -0.18 -2.47 9.86 -26.80 -0.26 -2.74 16 14 C 0.08 1.08 6.14 -68.01 -0.42 0.66 16 15 H 0.13 2.06 7.40 -51.93 -0.38 1.67 16 16 N -0.69 -8.74 5.29 -54.89 -0.29 -9.03 16 17 C 0.57 7.94 7.76 -12.42 -0.10 7.84 16 18 O -0.54 -9.44 15.90 5.30 0.08 -9.35 16 19 C -0.16 -1.92 5.87 -104.97 -0.62 -2.53 16 20 C -0.07 -0.61 9.46 -39.53 -0.37 -0.98 16 21 C -0.13 -1.11 10.00 -39.85 -0.40 -1.51 16 22 C 0.12 1.02 7.27 -83.95 -0.61 0.41 16 23 N -0.59 -3.51 6.05 -10.61 -0.06 -3.57 16 24 H 0.42 1.17 8.96 -40.82 -0.37 0.81 16 25 C 0.04 0.25 11.81 -16.73 -0.20 0.05 16 26 C -0.19 -1.49 11.09 -37.65 -0.42 -1.91 16 27 C -0.12 -1.26 6.36 -105.15 -0.67 -1.93 16 28 C 0.00 0.01 9.64 -38.86 -0.37 -0.37 16 29 C -0.10 -1.76 5.83 -26.46 -0.15 -1.91 16 30 C 0.13 2.79 4.23 -3.67 -0.02 2.78 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.06 1.21 7.92 -51.93 -0.41 0.79 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.60 6.75 -51.93 -0.35 0.25 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.40 4.14 5.12 -40.82 -0.21 3.93 16 39 H 0.13 0.93 6.36 -52.49 -0.33 0.60 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.59 7.64 -52.48 -0.40 1.19 16 44 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.02 0.53 7.44 -51.93 -0.39 0.14 16 47 H 0.08 1.80 4.36 -51.93 -0.23 1.57 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -34.86 374.51 -10.26 -45.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.47 Total: 4.21 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -5.32 Total: -9.60 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.04 Total: -54.33 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.15 Total: 18.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.86 -10.26 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016802350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.289 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds