Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99952 * 2 1 4 4 H 1.48498 * 109.47223 * 240.00845 * 3 2 1 5 5 H 1.48491 * 109.46805 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46932 * 120.00556 * 3 2 1 7 7 C 1.38809 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 197.84519 * 7 2 1 9 9 N 1.36943 * 119.99843 * 17.84723 * 7 2 1 10 10 C 1.46847 * 120.37984 * 208.90941 * 9 7 2 11 11 C 1.53345 * 108.81159 * 236.87924 * 10 9 7 12 12 C 1.53181 * 108.77130 * 308.68807 * 11 10 9 13 13 C 1.52853 * 117.65693 * 269.97394 * 12 11 10 14 14 C 1.52817 * 117.71632 * 201.12031 * 12 11 10 15 15 H 1.09007 * 117.50035 * 215.12830 * 14 12 11 16 16 N 1.46498 * 117.50355 * 0.13411 * 14 12 11 17 17 C 1.34772 * 120.00216 * 205.00632 * 16 14 12 18 18 O 1.21649 * 120.00177 * 359.97438 * 17 16 14 19 19 C 1.47061 * 120.00307 * 180.27521 * 17 16 14 20 20 C 1.35862 * 125.43413 * 179.41932 * 19 17 16 21 21 C 1.41586 * 107.72671 * 179.84529 * 20 19 17 22 22 C 1.40106 * 133.38009 * 180.08238 * 21 20 19 23 23 C 1.36438 * 119.83318 * 180.33574 * 22 21 20 24 24 C 1.38937 * 120.61337 * 0.02562 * 23 22 21 25 25 C 1.37678 * 120.65354 * 0.02562 * 24 23 22 26 26 C 1.39229 * 119.80272 * 359.97438 * 25 24 23 27 27 N 1.37487 * 133.17593 * 179.97438 * 26 25 24 28 28 H 0.96996 * 125.60266 * 0.02562 * 27 26 25 29 29 C 1.53185 * 115.07512 * 55.44346 * 12 11 10 30 30 C 1.46838 * 120.38552 * 28.88469 * 9 7 2 31 31 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.57862 * 117.08100 * 10 9 7 33 33 H 1.08993 * 109.58560 * 356.68367 * 10 9 7 34 34 H 1.09000 * 109.58857 * 188.89819 * 11 10 9 35 35 H 1.08997 * 109.58742 * 68.47199 * 11 10 9 36 36 H 1.09000 * 117.50205 * 144.80967 * 13 12 11 37 37 H 1.08992 * 117.50628 * 359.76516 * 13 12 11 38 38 H 0.97004 * 119.99985 * 25.00064 * 16 14 12 39 39 H 1.07999 * 126.13405 * 359.95972 * 20 19 17 40 40 H 1.08001 * 120.07992 * 0.33893 * 22 21 20 41 41 H 1.07999 * 119.69196 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.67897 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.09611 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.58564 * 64.35263 * 29 12 11 45 45 H 1.09008 * 109.58619 * 184.77342 * 29 12 11 46 46 H 1.09000 * 109.58251 * 242.92706 * 30 9 7 47 47 H 1.09003 * 109.57793 * 3.32875 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0513 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 1.8052 -3.6490 0.1907 11 6 2.1666 -4.5892 -0.9655 12 6 1.0057 -4.6105 -1.9648 13 6 -0.0886 -5.6576 -1.7588 14 6 0.9057 -5.8050 -2.9127 15 1 0.5380 -5.6175 -3.9216 16 7 1.9273 -6.8485 -2.7962 17 6 2.2155 -7.6307 -3.8553 18 8 1.6269 -7.4705 -4.9078 19 6 3.2367 -8.6822 -3.7366 20 6 3.6053 -9.5375 -4.7258 21 6 4.6139 -10.3859 -4.2085 22 6 5.3586 -11.4395 -4.7547 23 6 6.2801 -12.0891 -3.9863 24 6 6.4881 -11.7162 -2.6642 25 6 5.7682 -10.6848 -2.1042 26 6 4.8222 -10.0066 -2.8681 27 7 3.9687 -8.9628 -2.5991 28 1 3.8939 -8.4989 -1.7505 29 6 0.5853 -3.2385 -2.5008 30 6 0.2554 -2.3250 -1.3140 31 1 -0.4850 0.8400 0.0004 32 1 0.9944 -4.0837 0.7753 33 1 2.6777 -3.5001 0.8268 34 1 2.3353 -5.5946 -0.5799 35 1 3.0684 -4.2296 -1.4608 36 1 -1.1108 -5.3731 -2.0084 37 1 0.0174 -6.3369 -0.9131 38 1 2.3965 -6.9764 -1.9569 39 1 3.2025 -9.5641 -5.7275 40 1 5.2035 -11.7367 -5.7814 41 1 6.8531 -12.9007 -4.4098 42 1 7.2210 -12.2410 -2.0695 43 1 5.9369 -10.4027 -1.0755 44 1 1.4019 -2.8061 -3.0789 45 1 -0.2955 -3.3477 -3.1338 46 1 -0.6513 -2.6776 -0.8226 47 1 0.1081 -1.3048 -1.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016966443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = 69.624447 kcal Electronic energy + Delta-G solvation = -28316.372244 eV Core-core repulsion = 24465.623615 eV Total energy + Delta-G solvation = -3850.748629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87210 -39.91478 -38.46316 -37.03626 -35.58676 -33.35168 -32.45332 -31.67935 -30.15868 -29.76254 -29.26918 -28.30143 -24.71364 -24.38644 -22.61318 -22.47115 -22.05417 -21.35258 -20.72920 -20.28937 -18.76675 -18.23325 -17.47280 -16.67524 -16.21047 -15.97043 -15.48876 -15.14792 -14.81122 -14.41702 -14.32109 -14.17206 -14.12727 -13.84503 -13.59632 -13.42718 -13.21942 -13.13480 -12.77870 -12.32903 -12.06227 -11.97779 -11.73204 -11.67209 -11.40600 -11.26024 -11.03780 -10.75600 -10.51523 -10.41843 -10.36381 -10.21919 -10.00575 -9.76682 -9.70969 -9.44533 -8.70130 -8.52003 -8.48651 -8.09923 -6.69174 -5.82871 -3.26439 0.46135 1.29097 1.83157 2.56019 2.84277 3.09355 3.35620 3.41948 3.43210 3.58283 4.09313 4.33496 4.43484 4.46221 4.68281 4.78051 4.86248 4.97565 5.02860 5.03798 5.08195 5.19263 5.35124 5.37779 5.40354 5.56962 5.63522 5.70149 5.75248 5.94624 5.98431 5.99319 6.09564 6.15664 6.21001 6.28248 6.34954 6.35588 6.43301 6.54427 6.57625 6.62864 6.73137 6.76353 6.88766 7.00740 7.28664 7.32241 7.62630 7.75427 7.93397 8.42355 9.17560 9.80889 10.37223 11.24878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.002169 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.120862 B =12904.005896 C =13663.890508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.067 3.933 15 H 0.136 0.864 16 N -0.692 5.692 17 C 0.584 3.416 18 O -0.522 6.522 19 C 0.020 3.980 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.060 4.060 23 C -0.151 4.151 24 C -0.089 4.089 25 C -0.132 4.132 26 C 0.113 3.887 27 N -0.578 5.578 28 H 0.418 0.582 29 C -0.106 4.106 30 C 0.173 3.827 31 H 0.255 0.745 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.395 0.605 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.815 -23.088 -5.514 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.038 4.038 15 H 0.154 0.846 16 N -0.340 5.340 17 C 0.371 3.629 18 O -0.398 6.398 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.079 4.079 23 C -0.170 4.170 24 C -0.109 4.109 25 C -0.153 4.153 26 C 0.003 3.997 27 N -0.183 5.183 28 H 0.256 0.744 29 C -0.146 4.146 30 C 0.047 3.953 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.189 -22.678 -6.153 24.884 hybrid contribution 0.586 0.983 0.990 1.513 sum 8.775 -21.695 -5.164 23.965 Atomic orbital electron populations 1.70017 1.05284 1.25715 1.53434 1.25051 0.95258 0.98477 1.00732 0.86385 0.78974 0.83348 0.78156 1.20990 1.21604 1.20881 1.19128 0.92800 0.85045 1.41586 0.91866 1.43965 1.37850 1.01425 1.47863 1.20827 0.97420 0.87117 0.92316 1.21640 0.96318 0.98434 0.97323 1.21980 0.97918 0.91334 0.98357 1.23545 0.96318 1.02500 0.99498 1.21982 0.93021 0.91236 0.97547 0.84622 1.45294 1.40287 1.34625 1.13825 1.17154 0.81442 0.80213 0.84134 1.90846 1.51268 1.69758 1.27884 1.20192 0.99328 1.01365 0.88017 1.20919 0.97953 0.95222 0.99299 1.18222 1.00725 0.99958 0.93541 1.20425 0.94370 0.93480 0.99621 1.20647 1.00216 1.01614 0.94492 1.20890 0.98583 0.96041 0.95338 1.20103 0.97438 0.98189 0.99559 1.18350 0.94741 0.91225 0.95396 1.41965 1.33638 1.30152 1.12557 0.74405 1.21898 0.99809 0.92926 0.99935 1.20773 0.88771 0.98754 0.87011 0.93514 0.96292 0.92723 0.93989 0.91694 0.88050 0.89069 0.76968 0.82575 0.85690 0.85857 0.85541 0.85900 0.92020 0.92860 0.96300 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.23 55.49 0.62 -25.06 16 2 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.86 9.54 -15.06 -0.14 -7.01 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.25 2.94 -172.26 -0.51 -14.75 16 10 C 0.15 2.97 6.51 -3.67 -0.02 2.94 16 11 C -0.10 -1.54 5.37 -26.46 -0.14 -1.69 16 12 C -0.09 -1.49 1.94 -154.49 -0.30 -1.79 16 13 C -0.18 -2.49 9.86 -26.79 -0.26 -2.76 16 14 C 0.07 0.94 6.14 -68.01 -0.42 0.53 16 15 H 0.14 2.07 7.40 -51.93 -0.38 1.68 16 16 N -0.69 -8.41 5.34 -55.07 -0.29 -8.70 16 17 C 0.58 7.88 7.80 -12.69 -0.10 7.78 16 18 O -0.52 -8.74 16.41 5.23 0.09 -8.66 16 19 C 0.02 0.23 6.97 -82.29 -0.57 -0.34 16 20 C -0.11 -1.21 10.53 -39.16 -0.41 -1.63 16 21 C -0.12 -1.26 6.16 -106.93 -0.66 -1.91 16 22 C -0.06 -0.51 10.06 -39.53 -0.40 -0.91 16 23 C -0.15 -1.10 9.97 -39.97 -0.40 -1.50 16 24 C -0.09 -0.63 10.01 -39.53 -0.40 -1.03 16 25 C -0.13 -1.06 10.08 -39.42 -0.40 -1.46 16 26 C 0.11 1.11 7.25 -83.97 -0.61 0.50 16 27 N -0.58 -5.35 6.07 -7.35 -0.04 -5.40 16 28 H 0.42 2.79 8.12 -40.82 -0.33 2.46 16 29 C -0.11 -1.97 5.83 -26.46 -0.15 -2.12 16 30 C 0.17 3.98 5.40 -3.68 -0.02 3.96 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 34 H 0.04 0.52 6.75 -51.93 -0.35 0.17 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.40 3.89 6.17 -40.82 -0.25 3.64 16 39 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.89 8.10 -51.92 -0.42 0.47 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 2.37 5.93 -51.93 -0.31 2.06 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -31.83 382.94 -11.55 -43.38 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.66 Total: 5.47 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -5.49 Total: -8.40 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.22 Total: -53.91 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.83 -11.55 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016966443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.000 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds