Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99952 * 2 1 4 4 H 1.48498 * 109.47223 * 240.00845 * 3 2 1 5 5 H 1.48491 * 109.46805 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46932 * 120.00556 * 3 2 1 7 7 C 1.38809 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 197.84519 * 7 2 1 9 9 N 1.36943 * 119.99843 * 17.84723 * 7 2 1 10 10 C 1.46847 * 120.37984 * 208.90941 * 9 7 2 11 11 C 1.53345 * 108.81159 * 236.87924 * 10 9 7 12 12 C 1.53181 * 108.77130 * 308.68807 * 11 10 9 13 13 C 1.52853 * 117.65693 * 269.97394 * 12 11 10 14 14 C 1.52817 * 117.71632 * 201.12031 * 12 11 10 15 15 H 1.09007 * 117.50035 * 215.12830 * 14 12 11 16 16 N 1.46498 * 117.50355 * 0.13411 * 14 12 11 17 17 C 1.34772 * 120.00216 * 205.00632 * 16 14 12 18 18 O 1.21649 * 120.00177 * 359.97438 * 17 16 14 19 19 C 1.47061 * 120.00307 * 180.27521 * 17 16 14 20 20 C 1.35862 * 125.43413 * 179.41932 * 19 17 16 21 21 C 1.41586 * 107.72671 * 179.84529 * 20 19 17 22 22 C 1.40106 * 133.38009 * 180.08238 * 21 20 19 23 23 C 1.36438 * 119.83318 * 180.33574 * 22 21 20 24 24 C 1.38937 * 120.61337 * 0.02562 * 23 22 21 25 25 C 1.37678 * 120.65354 * 0.02562 * 24 23 22 26 26 C 1.39229 * 119.80272 * 359.97438 * 25 24 23 27 27 N 1.37487 * 133.17593 * 179.97438 * 26 25 24 28 28 H 0.96996 * 125.60266 * 0.02562 * 27 26 25 29 29 C 1.53185 * 115.07512 * 55.44346 * 12 11 10 30 30 C 1.46838 * 120.38552 * 28.88469 * 9 7 2 31 31 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.57862 * 117.08100 * 10 9 7 33 33 H 1.08993 * 109.58560 * 356.68367 * 10 9 7 34 34 H 1.09000 * 109.58857 * 188.89819 * 11 10 9 35 35 H 1.08997 * 109.58742 * 68.47199 * 11 10 9 36 36 H 1.09000 * 117.50205 * 144.80967 * 13 12 11 37 37 H 1.08992 * 117.50628 * 359.76516 * 13 12 11 38 38 H 0.97004 * 119.99985 * 25.00064 * 16 14 12 39 39 H 1.07999 * 126.13405 * 359.95972 * 20 19 17 40 40 H 1.08001 * 120.07992 * 0.33893 * 22 21 20 41 41 H 1.07999 * 119.69196 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.67897 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.09611 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.58564 * 64.35263 * 29 12 11 45 45 H 1.09008 * 109.58619 * 184.77342 * 29 12 11 46 46 H 1.09000 * 109.58251 * 242.92706 * 30 9 7 47 47 H 1.09003 * 109.57793 * 3.32875 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0513 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 1.8052 -3.6490 0.1907 11 6 2.1666 -4.5892 -0.9655 12 6 1.0057 -4.6105 -1.9648 13 6 -0.0886 -5.6576 -1.7588 14 6 0.9057 -5.8050 -2.9127 15 1 0.5380 -5.6175 -3.9216 16 7 1.9273 -6.8485 -2.7962 17 6 2.2155 -7.6307 -3.8553 18 8 1.6269 -7.4705 -4.9078 19 6 3.2367 -8.6822 -3.7366 20 6 3.6053 -9.5375 -4.7258 21 6 4.6139 -10.3859 -4.2085 22 6 5.3586 -11.4395 -4.7547 23 6 6.2801 -12.0891 -3.9863 24 6 6.4881 -11.7162 -2.6642 25 6 5.7682 -10.6848 -2.1042 26 6 4.8222 -10.0066 -2.8681 27 7 3.9687 -8.9628 -2.5991 28 1 3.8939 -8.4989 -1.7505 29 6 0.5853 -3.2385 -2.5008 30 6 0.2554 -2.3250 -1.3140 31 1 -0.4850 0.8400 0.0004 32 1 0.9944 -4.0837 0.7753 33 1 2.6777 -3.5001 0.8268 34 1 2.3353 -5.5946 -0.5799 35 1 3.0684 -4.2296 -1.4608 36 1 -1.1108 -5.3731 -2.0084 37 1 0.0174 -6.3369 -0.9131 38 1 2.3965 -6.9764 -1.9569 39 1 3.2025 -9.5641 -5.7275 40 1 5.2035 -11.7367 -5.7814 41 1 6.8531 -12.9007 -4.4098 42 1 7.2210 -12.2410 -2.0695 43 1 5.9369 -10.4027 -1.0755 44 1 1.4019 -2.8061 -3.0789 45 1 -0.2955 -3.3477 -3.1338 46 1 -0.6513 -2.6776 -0.8226 47 1 0.1081 -1.3048 -1.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016966443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 51.445452 kcal Electronic energy + Delta-G solvation = -28317.160544 eV Core-core repulsion = 24465.623615 eV Total energy + Delta-G solvation = -3851.536929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61361 -41.03308 -39.70532 -37.70969 -37.18299 -34.66170 -33.43900 -33.12339 -31.71478 -30.57381 -30.08898 -29.75078 -26.27815 -25.53807 -24.10200 -23.25700 -23.07334 -22.52059 -21.92814 -21.24433 -19.88003 -19.51111 -18.36968 -18.17099 -17.38379 -16.78459 -16.70331 -16.42475 -16.01628 -15.71211 -15.35401 -15.18940 -15.08268 -15.04529 -14.86216 -14.74455 -14.48604 -14.19607 -13.88746 -13.82446 -13.33493 -13.13234 -12.91905 -12.66159 -12.61035 -12.58099 -12.52831 -12.30973 -12.06291 -11.82745 -11.81091 -11.51854 -11.43363 -11.27089 -10.91606 -10.76671 -10.48870 -9.84660 -9.24175 -8.78677 -8.63691 -7.87449 -5.33515 -0.27624 0.67264 1.03568 1.45350 1.48207 1.54476 1.73832 1.94272 2.14757 2.50420 2.89977 2.96386 3.27384 3.53206 3.60745 3.73361 3.76419 3.81190 3.93666 4.08679 4.10067 4.21008 4.35776 4.46230 4.49428 4.54961 4.58367 4.70148 4.76329 4.82108 4.85076 4.90351 4.93277 5.00129 5.04894 5.11517 5.14715 5.27196 5.32112 5.35656 5.48709 5.53155 5.54734 5.64399 5.65808 5.70458 5.76296 6.11679 6.27795 6.40082 6.45380 6.92853 7.15380 7.87813 8.38299 9.17461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.002169 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.120862 B =12904.005896 C =13663.890508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.084 4.084 12 C -0.113 4.113 13 C -0.165 4.165 14 C 0.083 3.917 15 H 0.125 0.875 16 N -0.680 5.680 17 C 0.587 3.413 18 O -0.561 6.561 19 C 0.005 3.995 20 C -0.116 4.116 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.142 4.142 26 C 0.103 3.897 27 N -0.568 5.568 28 H 0.429 0.571 29 C -0.095 4.095 30 C 0.181 3.819 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.001 0.999 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 -25.740 -4.845 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.204 4.204 14 C -0.023 4.023 15 H 0.142 0.858 16 N -0.330 5.330 17 C 0.375 3.625 18 O -0.440 6.440 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.105 4.105 25 C -0.162 4.162 26 C -0.007 4.007 27 N -0.174 5.174 28 H 0.269 0.731 29 C -0.135 4.135 30 C 0.055 3.945 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.246 0.754 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.019 0.981 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.299 -25.358 -5.442 27.906 hybrid contribution 0.019 1.671 0.791 1.849 sum 10.318 -23.687 -4.651 26.252 Atomic orbital electron populations 1.70164 1.06610 1.25898 1.55130 1.25775 0.95993 1.01455 1.01340 0.85407 0.77657 0.79505 0.78290 1.20694 1.22092 1.19991 1.19454 0.93052 0.86344 1.40510 0.91771 1.44231 1.37894 1.02404 1.48629 1.20999 0.97240 0.85951 0.93858 1.21463 0.95724 0.99515 0.95578 1.21817 0.99411 0.90450 0.99733 1.23634 0.95926 1.01054 0.99767 1.21718 0.93245 0.90345 0.96984 0.85770 1.45135 1.39841 1.33743 1.14235 1.17360 0.81235 0.80282 0.83593 1.90823 1.52829 1.70971 1.29358 1.19850 0.99948 1.01479 0.89185 1.21077 0.98316 0.95551 0.99376 1.18453 1.01287 1.00915 0.94279 1.20701 0.94588 0.93260 1.00639 1.21024 0.99573 1.01711 0.94610 1.21331 0.98284 0.95348 0.95488 1.20437 0.96993 0.98248 1.00527 1.18659 0.95143 0.91380 0.95540 1.41838 1.33107 1.30100 1.12375 0.73064 1.21647 1.00011 0.93813 0.97982 1.20529 0.88133 0.97628 0.88243 0.94112 0.96303 0.92653 0.89746 0.92538 0.87804 0.87065 0.75366 0.82840 0.84436 0.83379 0.82711 0.83840 0.93384 0.91347 0.98088 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.23 21.65 0.24 -54.68 16 2 C -0.05 -2.78 4.89 84.86 0.41 -2.37 16 3 Si 0.96 44.76 29.59 68.60 2.03 46.79 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.26 -14.31 9.54 84.03 0.80 -13.51 16 8 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -29.82 2.94 -698.92 -2.05 -31.87 16 10 C 0.14 5.60 6.51 86.43 0.56 6.16 16 11 C -0.08 -2.47 5.37 30.77 0.17 -2.30 16 12 C -0.11 -3.40 1.94 -52.17 -0.10 -3.50 16 13 C -0.17 -4.19 9.86 30.55 0.30 -3.88 16 14 C 0.08 2.19 6.14 44.94 0.28 2.46 16 15 H 0.12 3.68 7.40 -2.38 -0.02 3.66 16 16 N -0.68 -15.18 5.34 -446.39 -2.38 -17.56 16 17 C 0.59 15.35 7.80 86.56 0.68 16.02 16 18 O -0.56 -18.86 16.41 -4.19 -0.07 -18.93 16 19 C 0.01 0.11 6.97 39.91 0.28 0.39 16 20 C -0.12 -2.60 10.53 22.54 0.24 -2.37 16 21 C -0.15 -2.88 6.16 -21.36 -0.13 -3.01 16 22 C -0.07 -1.12 10.06 22.30 0.22 -0.90 16 23 C -0.15 -1.74 9.97 22.02 0.22 -1.53 16 24 C -0.09 -0.91 10.01 22.30 0.22 -0.69 16 25 C -0.14 -1.85 10.08 22.38 0.23 -1.63 16 26 C 0.10 1.83 7.25 39.14 0.28 2.12 16 27 N -0.57 -9.49 6.07 -177.18 -1.08 -10.57 16 28 H 0.43 4.65 8.12 -92.71 -0.75 3.90 16 29 C -0.10 -3.55 5.83 30.77 0.18 -3.37 16 30 C 0.18 8.57 5.40 86.43 0.47 9.04 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 34 H 0.08 1.77 6.75 -2.39 -0.02 1.75 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.41 6.80 6.17 -92.71 -0.57 6.22 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 2.29 8.10 -2.38 -0.02 2.28 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.05 2.92 5.93 -2.39 -0.01 2.91 16 Total: -1.00 -71.26 382.94 1.68 -69.58 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.32 Total: 20.09 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.30 Total: -2.86 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -5.27 Total: -114.68 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.07 Total: -18.93 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.26 1.68 -69.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016966443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.025 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds