Wall clock time and date at job start Sat Apr 11 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48497 * 109.47278 * 90.00129 * 3 2 1 5 5 H 1.48506 * 109.47387 * 210.00133 * 3 2 1 6 6 H 1.48499 * 109.47414 * 330.00452 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28630 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28730 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.08997 * 117.50314 * 0.13665 * 14 12 11 16 16 N 1.46499 * 117.49888 * 215.09413 * 14 12 11 17 17 C 1.34781 * 119.99611 * 154.99881 * 16 14 12 18 18 O 1.21643 * 119.99974 * 0.02562 * 17 16 14 19 19 C 1.47066 * 119.99770 * 180.02562 * 17 16 14 20 20 C 1.35867 * 125.42818 * 180.02562 * 19 17 16 21 21 C 1.41590 * 107.72232 * 179.97438 * 20 19 17 22 22 C 1.40103 * 133.37109 * 179.97438 * 21 20 19 23 23 C 1.36445 * 119.82379 * 180.02562 * 22 21 20 24 24 C 1.38937 * 120.61891 * 359.95522 * 23 22 21 25 25 C 1.37674 * 120.64735 * 0.04628 * 24 23 22 26 26 C 1.39232 * 119.81150 * 359.97438 * 25 24 23 27 27 N 1.37475 * 133.18075 * 180.34489 * 26 25 24 28 28 H 0.96996 * 125.61333 * 359.93919 * 27 26 25 29 29 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 30 30 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 31 31 H 0.96999 * 120.00333 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 33 33 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 34 34 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 35 35 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 36 36 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 37 37 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 38 38 H 0.97000 * 120.00527 * 335.00613 * 16 14 12 39 39 H 1.07995 * 126.13890 * 359.97438 * 20 19 17 40 40 H 1.07994 * 120.09300 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.68857 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.68040 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.09785 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.59144 * 184.76231 * 29 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 29 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 30 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3601 0.3598 10 6 0.2549 -2.3280 1.3098 11 6 0.5771 -3.2417 2.4923 12 6 1.0003 -4.6129 1.9566 13 6 -0.0927 -5.6603 1.7453 14 6 0.8973 -5.8083 2.9030 15 1 0.5252 -5.6221 3.9104 16 7 1.9199 -6.8512 2.7893 17 6 2.2044 -7.6342 3.8488 18 8 1.6118 -7.4754 4.8991 19 6 3.2314 -8.6808 3.7349 20 6 3.6046 -9.5295 4.7281 21 6 4.6148 -10.3776 4.2134 22 6 5.3631 -11.4265 4.7637 23 6 6.2905 -12.0723 3.9992 24 6 6.5007 -11.7005 2.6771 25 6 5.7781 -10.6730 2.1137 26 6 4.8263 -9.9983 2.8735 27 7 3.9652 -8.9625 2.5988 28 1 3.8878 -8.5028 1.7482 29 6 2.1650 -4.5900 0.9618 30 6 1.8075 -3.6488 -0.1949 31 1 -0.4850 0.8400 -0.0004 32 1 0.1085 -1.3088 1.6673 33 1 -0.6521 -2.6785 0.8175 34 1 -0.3060 -3.3519 3.1219 35 1 1.3913 -2.8092 3.0738 36 1 -1.1160 -5.3766 1.9913 37 1 0.0168 -6.3383 0.8991 38 1 2.3924 -6.9780 1.9517 39 1 3.2027 -9.5530 5.7302 40 1 5.2062 -11.7231 5.7902 41 1 6.8664 -12.8803 4.4257 42 1 7.2384 -12.2224 2.0857 43 1 5.9491 -10.3911 1.0852 44 1 2.3357 -5.5950 0.5759 45 1 3.0648 -4.2302 1.4609 46 1 0.9993 -4.0837 -0.7830 47 1 2.6824 -3.4987 -0.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016966444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:49 Heat of formation + Delta-G solvation = 69.468830 kcal Electronic energy + Delta-G solvation = -28318.467012 eV Core-core repulsion = 24467.711635 eV Total energy + Delta-G solvation = -3850.755377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87330 -39.91800 -38.47106 -37.03730 -35.59305 -33.35279 -32.45402 -31.68035 -30.18758 -29.76566 -29.26974 -28.30901 -24.71420 -24.38684 -22.61135 -22.47033 -22.05564 -21.35697 -20.73191 -20.29005 -18.76719 -18.23501 -17.47438 -16.67492 -16.21204 -15.97204 -15.48866 -15.15150 -14.81647 -14.41854 -14.32100 -14.17167 -14.13087 -13.84463 -13.59941 -13.43769 -13.21957 -13.13462 -12.77837 -12.33608 -12.06201 -11.97865 -11.73739 -11.67437 -11.41498 -11.26058 -11.03884 -10.78511 -10.50003 -10.39821 -10.36445 -10.21960 -10.00751 -9.75967 -9.71022 -9.44588 -8.70228 -8.52073 -8.49155 -8.09974 -6.69451 -5.82984 -3.26736 0.46101 1.29059 1.83105 2.55950 2.84150 3.09293 3.35194 3.42566 3.43178 3.58245 4.09141 4.33441 4.43370 4.45992 4.68242 4.78025 4.86099 4.97490 5.02661 5.03559 5.08178 5.19218 5.34862 5.37695 5.40192 5.56699 5.63476 5.70105 5.75016 5.94442 5.98138 5.99145 6.09531 6.15612 6.20890 6.28214 6.34658 6.35540 6.43212 6.54199 6.57006 6.63868 6.73101 6.76391 6.88742 7.00688 7.28581 7.32401 7.62627 7.75694 7.93295 8.42189 9.17454 9.80725 10.36952 11.24838 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002171 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.187052 B =12892.703971 C =13655.314030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.180 4.180 14 C 0.067 3.933 15 H 0.136 0.864 16 N -0.692 5.692 17 C 0.584 3.416 18 O -0.522 6.522 19 C 0.020 3.980 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.060 4.060 23 C -0.151 4.151 24 C -0.089 4.089 25 C -0.132 4.132 26 C 0.113 3.887 27 N -0.578 5.578 28 H 0.418 0.582 29 C -0.098 4.098 30 C 0.150 3.850 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.396 0.604 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -23.112 5.520 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.038 4.038 15 H 0.154 0.846 16 N -0.340 5.340 17 C 0.371 3.629 18 O -0.397 6.397 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.079 4.079 23 C -0.170 4.170 24 C -0.108 4.108 25 C -0.153 4.153 26 C 0.003 3.997 27 N -0.183 5.183 28 H 0.256 0.744 29 C -0.137 4.137 30 C 0.023 3.977 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.037 0.963 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.240 -22.708 6.150 24.927 hybrid contribution 0.576 0.985 -0.971 1.499 sum 8.816 -21.723 5.179 24.009 Atomic orbital electron populations 1.70028 1.05278 1.25586 1.53535 1.25054 0.95270 0.98479 1.00748 0.86302 0.79129 0.83651 0.77748 1.21384 1.20447 1.21750 1.19181 0.92784 0.84985 1.41528 0.91799 1.43956 1.37787 1.01446 1.47923 1.20672 0.88828 0.98751 0.87090 1.21817 0.99826 0.92936 0.99966 1.21980 0.97910 0.91322 0.98389 1.23547 0.96362 1.02501 0.99455 1.21983 0.93018 0.91238 0.97532 0.84618 1.45296 1.40180 1.34597 1.13966 1.17156 0.81489 0.80191 0.84103 1.90844 1.51176 1.69686 1.28039 1.20194 0.99246 1.01485 0.87989 1.20922 0.97955 0.95253 0.99260 1.18222 1.00681 0.99976 0.93571 1.20425 0.94309 0.93548 0.99611 1.20649 1.00161 1.01645 0.94517 1.20890 0.98591 0.96053 0.95316 1.20104 0.97367 0.98234 0.99587 1.18346 0.94601 0.91368 0.95394 1.41960 1.33188 1.30688 1.12465 0.74406 1.21645 0.96277 0.98450 0.97361 1.20825 0.97417 0.87095 0.92322 0.93574 0.89115 0.96337 0.92818 0.92041 0.88051 0.89065 0.76967 0.82573 0.85689 0.85859 0.85538 0.85901 0.93978 0.91693 0.96275 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.23 55.49 0.62 -25.07 16 2 C 0.00 0.09 4.89 -17.43 -0.09 0.01 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.26 -6.84 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.25 2.94 -172.56 -0.51 -14.75 16 10 C 0.17 3.98 5.37 -3.92 -0.02 3.96 16 11 C -0.11 -1.96 5.81 -26.71 -0.16 -2.12 16 12 C -0.09 -1.49 1.94 -154.49 -0.30 -1.79 16 13 C -0.18 -2.49 9.87 -26.78 -0.26 -2.75 16 14 C 0.07 0.95 6.14 -68.00 -0.42 0.53 16 15 H 0.14 2.07 7.40 -51.93 -0.38 1.68 16 16 N -0.69 -8.40 5.34 -55.06 -0.29 -8.70 16 17 C 0.58 7.87 7.80 -12.68 -0.10 7.77 16 18 O -0.52 -8.74 16.41 5.24 0.09 -8.65 16 19 C 0.02 0.23 6.97 -82.29 -0.57 -0.34 16 20 C -0.11 -1.21 10.53 -39.15 -0.41 -1.63 16 21 C -0.12 -1.26 6.16 -106.93 -0.66 -1.91 16 22 C -0.06 -0.51 10.06 -39.53 -0.40 -0.91 16 23 C -0.15 -1.10 9.97 -39.97 -0.40 -1.50 16 24 C -0.09 -0.63 10.01 -39.53 -0.40 -1.03 16 25 C -0.13 -1.06 10.08 -39.42 -0.40 -1.46 16 26 C 0.11 1.11 7.25 -83.98 -0.61 0.50 16 27 N -0.58 -5.35 6.07 -7.35 -0.04 -5.39 16 28 H 0.42 2.79 8.12 -40.82 -0.33 2.46 16 29 C -0.10 -1.54 5.37 -26.46 -0.14 -1.69 16 30 C 0.15 2.97 6.52 -3.67 -0.02 2.94 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.09 2.37 5.94 -51.93 -0.31 2.06 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.90 8.10 -51.92 -0.42 0.48 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.40 3.89 6.17 -40.82 -0.25 3.64 16 39 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 44 H 0.04 0.52 6.75 -51.93 -0.35 0.17 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -31.86 382.91 -11.55 -43.41 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.66 Total: 5.39 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -5.49 Total: -8.40 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.22 Total: -53.91 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.86 -11.55 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016966444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.877 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds