Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48497 * 109.47278 * 90.00129 * 3 2 1 5 5 H 1.48506 * 109.47387 * 210.00133 * 3 2 1 6 6 H 1.48499 * 109.47414 * 330.00452 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28630 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28730 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.08997 * 117.50314 * 0.13665 * 14 12 11 16 16 N 1.46499 * 117.49888 * 215.09413 * 14 12 11 17 17 C 1.34781 * 119.99611 * 154.99881 * 16 14 12 18 18 O 1.21643 * 119.99974 * 0.02562 * 17 16 14 19 19 C 1.47066 * 119.99770 * 180.02562 * 17 16 14 20 20 C 1.35867 * 125.42818 * 180.02562 * 19 17 16 21 21 C 1.41590 * 107.72232 * 179.97438 * 20 19 17 22 22 C 1.40103 * 133.37109 * 179.97438 * 21 20 19 23 23 C 1.36445 * 119.82379 * 180.02562 * 22 21 20 24 24 C 1.38937 * 120.61891 * 359.95522 * 23 22 21 25 25 C 1.37674 * 120.64735 * 0.04628 * 24 23 22 26 26 C 1.39232 * 119.81150 * 359.97438 * 25 24 23 27 27 N 1.37475 * 133.18075 * 180.34489 * 26 25 24 28 28 H 0.96996 * 125.61333 * 359.93919 * 27 26 25 29 29 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 30 30 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 31 31 H 0.96999 * 120.00333 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 33 33 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 34 34 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 35 35 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 36 36 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 37 37 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 38 38 H 0.97000 * 120.00527 * 335.00613 * 16 14 12 39 39 H 1.07995 * 126.13890 * 359.97438 * 20 19 17 40 40 H 1.07994 * 120.09300 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.68857 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.68040 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.09785 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.59144 * 184.76231 * 29 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 29 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 30 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3601 0.3598 10 6 0.2549 -2.3280 1.3098 11 6 0.5771 -3.2417 2.4923 12 6 1.0003 -4.6129 1.9566 13 6 -0.0927 -5.6603 1.7453 14 6 0.8973 -5.8083 2.9030 15 1 0.5252 -5.6221 3.9104 16 7 1.9199 -6.8512 2.7893 17 6 2.2044 -7.6342 3.8488 18 8 1.6118 -7.4754 4.8991 19 6 3.2314 -8.6808 3.7349 20 6 3.6046 -9.5295 4.7281 21 6 4.6148 -10.3776 4.2134 22 6 5.3631 -11.4265 4.7637 23 6 6.2905 -12.0723 3.9992 24 6 6.5007 -11.7005 2.6771 25 6 5.7781 -10.6730 2.1137 26 6 4.8263 -9.9983 2.8735 27 7 3.9652 -8.9625 2.5988 28 1 3.8878 -8.5028 1.7482 29 6 2.1650 -4.5900 0.9618 30 6 1.8075 -3.6488 -0.1949 31 1 -0.4850 0.8400 -0.0004 32 1 0.1085 -1.3088 1.6673 33 1 -0.6521 -2.6785 0.8175 34 1 -0.3060 -3.3519 3.1219 35 1 1.3913 -2.8092 3.0738 36 1 -1.1160 -5.3766 1.9913 37 1 0.0168 -6.3383 0.8991 38 1 2.3924 -6.9780 1.9517 39 1 3.2027 -9.5530 5.7302 40 1 5.2062 -11.7231 5.7902 41 1 6.8664 -12.8803 4.4257 42 1 7.2384 -12.2224 2.0857 43 1 5.9491 -10.3911 1.0852 44 1 2.3357 -5.5950 0.5759 45 1 3.0648 -4.2302 1.4609 46 1 0.9993 -4.0837 -0.7830 47 1 2.6824 -3.4987 -0.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016966444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 51.252663 kcal Electronic energy + Delta-G solvation = -28319.256924 eV Core-core repulsion = 24467.711635 eV Total energy + Delta-G solvation = -3851.545289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61417 -41.03668 -39.71291 -37.70999 -37.18744 -34.66369 -33.43975 -33.12360 -31.74584 -30.57395 -30.09101 -29.75583 -26.27908 -25.53809 -24.09745 -23.25874 -23.07614 -22.52292 -21.92733 -21.24453 -19.88184 -19.51294 -18.36923 -18.17062 -17.38701 -16.79028 -16.70408 -16.42366 -16.01626 -15.71284 -15.36037 -15.19089 -15.08743 -15.04623 -14.86480 -14.74464 -14.48681 -14.19506 -13.89025 -13.82833 -13.33303 -13.14560 -12.93009 -12.65632 -12.62294 -12.61043 -12.52307 -12.27882 -12.04395 -11.82730 -11.81121 -11.51855 -11.43174 -11.27035 -10.91594 -10.77008 -10.49678 -9.84657 -9.24146 -8.78661 -8.64047 -7.87668 -5.33885 -0.27601 0.67272 1.03578 1.45045 1.47365 1.55179 1.73790 1.94283 2.14791 2.50099 2.89906 2.96393 3.27173 3.53156 3.60585 3.73306 3.76298 3.81128 3.93462 4.08488 4.10084 4.21016 4.35766 4.46218 4.49193 4.54929 4.58361 4.70514 4.76283 4.82094 4.85094 4.90351 4.93298 5.00047 5.05346 5.11275 5.14724 5.27162 5.32109 5.35609 5.48736 5.53267 5.54745 5.64467 5.65807 5.70476 5.76207 6.11690 6.27819 6.39978 6.45405 6.92865 7.15215 7.87572 8.37981 9.17474 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002171 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.187052 B =12892.703971 C =13655.314030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.268 1.268 6 H -0.295 1.295 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.095 4.095 12 C -0.113 4.113 13 C -0.166 4.166 14 C 0.083 3.917 15 H 0.125 0.875 16 N -0.680 5.680 17 C 0.587 3.413 18 O -0.561 6.561 19 C 0.005 3.995 20 C -0.116 4.116 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.142 4.142 26 C 0.103 3.897 27 N -0.568 5.568 28 H 0.429 0.571 29 C -0.084 4.084 30 C 0.145 3.855 31 H 0.250 0.750 32 H 0.053 0.947 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.964 -25.776 4.853 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.193 1.193 6 H -0.222 1.222 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.204 4.204 14 C -0.023 4.023 15 H 0.142 0.858 16 N -0.330 5.330 17 C 0.375 3.625 18 O -0.440 6.440 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.104 4.104 25 C -0.162 4.162 26 C -0.007 4.007 27 N -0.174 5.174 28 H 0.269 0.731 29 C -0.123 4.123 30 C 0.020 3.980 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.019 0.981 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.246 0.754 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.375 -25.401 5.442 27.972 hybrid contribution 0.001 1.678 -0.773 1.848 sum 10.376 -23.722 4.669 26.309 Atomic orbital electron populations 1.70172 1.06612 1.25807 1.55235 1.25775 0.96003 1.01450 1.01371 0.85330 0.78227 0.79821 0.77460 1.21454 1.19266 1.22193 1.19494 0.93004 0.86275 1.40422 0.91744 1.44222 1.37828 1.02431 1.48686 1.20425 0.88182 0.97620 0.88301 1.21569 1.00044 0.93830 0.98013 1.21816 0.99391 0.90433 0.99773 1.23638 0.95969 1.01054 0.99730 1.21718 0.93238 0.90346 0.96974 0.85768 1.45137 1.39735 1.33715 1.14373 1.17362 0.81285 0.80257 0.83563 1.90822 1.52733 1.70904 1.29513 1.19851 0.99848 1.01620 0.89150 1.21080 0.98322 0.95583 0.99339 1.18453 1.01241 1.00929 0.94313 1.20701 0.94531 0.93332 1.00625 1.21026 0.99526 1.01730 0.94641 1.21331 0.98312 0.95350 0.95457 1.20438 0.96916 0.98293 1.00559 1.18655 0.95007 0.91522 0.95534 1.41833 1.32657 1.30627 1.12289 0.73061 1.21469 0.95691 0.99529 0.95610 1.20998 0.97240 0.85929 0.93865 0.94132 0.92884 0.98136 0.91315 0.93395 0.87813 0.87055 0.75363 0.82843 0.84436 0.83383 0.82709 0.83840 0.89730 0.92527 0.96276 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 11.23 21.65 0.24 -54.73 16 2 C -0.05 -2.81 4.89 84.86 0.41 -2.39 16 3 Si 0.96 44.81 29.59 68.60 2.03 46.84 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.26 -14.21 9.54 84.03 0.80 -13.41 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -29.80 2.94 -699.85 -2.06 -31.86 16 10 C 0.18 8.58 5.37 86.27 0.46 9.04 16 11 C -0.10 -3.55 5.81 30.61 0.18 -3.37 16 12 C -0.11 -3.39 1.94 -52.17 -0.10 -3.50 16 13 C -0.17 -4.18 9.87 30.56 0.30 -3.88 16 14 C 0.08 2.19 6.14 44.95 0.28 2.47 16 15 H 0.12 3.68 7.40 -2.39 -0.02 3.66 16 16 N -0.68 -15.15 5.34 -446.36 -2.38 -17.54 16 17 C 0.59 15.33 7.80 86.56 0.68 16.01 16 18 O -0.56 -18.84 16.41 -4.17 -0.07 -18.91 16 19 C 0.00 0.11 6.97 39.91 0.28 0.39 16 20 C -0.12 -2.60 10.53 22.55 0.24 -2.36 16 21 C -0.15 -2.88 6.16 -21.36 -0.13 -3.01 16 22 C -0.07 -1.12 10.06 22.30 0.22 -0.90 16 23 C -0.15 -1.74 9.97 22.02 0.22 -1.53 16 24 C -0.09 -0.91 10.01 22.30 0.22 -0.69 16 25 C -0.14 -1.85 10.08 22.38 0.23 -1.63 16 26 C 0.10 1.83 7.25 39.14 0.28 2.12 16 27 N -0.57 -9.47 6.07 -177.18 -1.08 -10.55 16 28 H 0.43 4.64 8.12 -92.71 -0.75 3.88 16 29 C -0.08 -2.47 5.37 30.77 0.17 -2.30 16 30 C 0.15 5.59 6.52 86.43 0.56 6.16 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.05 2.90 5.94 -2.39 -0.01 2.89 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.07 2.31 8.10 -2.38 -0.02 2.29 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.41 6.78 6.17 -92.71 -0.57 6.21 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.08 1.77 6.75 -2.39 -0.02 1.75 16 45 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16 Total: -1.00 -71.33 382.91 1.66 -69.66 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.32 Total: 19.88 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.30 Total: -2.80 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.28 Total: -114.67 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.33 1.66 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016966444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.917 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds