Wall clock time and date at job start Sat Apr 11 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48500 * 109.46925 * 274.48034 * 3 2 1 5 5 H 1.48497 * 109.47202 * 34.48143 * 3 2 1 6 6 H 1.48500 * 109.46850 * 154.48302 * 3 2 1 7 7 C 1.38816 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99598 * 163.66712 * 7 2 1 9 9 N 1.36940 * 120.00015 * 343.66025 * 7 2 1 10 10 C 1.47155 * 120.70843 * 154.54528 * 9 7 2 11 11 C 1.53883 * 108.02904 * 132.75711 * 10 9 7 12 12 H 1.09004 * 112.57962 * 182.22659 * 11 10 9 13 13 C 1.54132 * 107.71252 * 306.32515 * 11 10 9 14 14 C 1.54275 * 104.88956 * 89.41226 * 13 11 10 15 15 C 1.54542 * 104.84899 * 359.80571 * 14 13 11 16 16 H 1.09004 * 112.18318 * 146.41180 * 15 14 13 17 17 C 1.47975 * 120.64133 * 334.24978 * 9 7 2 18 18 N 1.48302 * 107.20808 * 58.36233 * 11 10 9 19 19 C 1.34784 * 128.07651 * 106.70552 * 18 11 10 20 20 O 1.21280 * 120.00136 * 179.68010 * 19 18 11 21 21 C 1.50694 * 119.99845 * 359.67422 * 19 18 11 22 22 C 1.50708 * 109.47074 * 180.02562 * 21 19 18 23 23 C 1.34240 * 126.49829 * 265.02890 * 22 21 19 24 24 N 1.36832 * 109.92214 * 179.97438 * 23 22 21 25 25 H 0.97007 * 125.05824 * 179.72978 * 24 23 22 26 26 C 1.37682 * 109.88144 * 0.02562 * 24 23 22 27 27 C 1.39123 * 133.51028 * 179.97438 * 26 24 23 28 28 C 1.37745 * 119.77916 * 179.97438 * 27 26 24 29 29 C 1.38830 * 120.66852 * 0.03760 * 28 27 26 30 30 C 1.36629 * 120.52669 * 359.97438 * 29 28 27 31 31 C 1.39629 * 119.76619 * 359.97438 * 30 29 28 32 32 H 0.97006 * 120.00345 * 359.97438 * 1 2 3 33 33 H 1.09010 * 109.75179 * 13.12409 * 10 9 7 34 34 H 1.09002 * 109.79304 * 252.41279 * 10 9 7 35 35 H 1.09005 * 110.50325 * 330.47365 * 13 11 10 36 36 H 1.09001 * 110.27499 * 208.23645 * 13 11 10 37 37 H 1.09002 * 110.36181 * 240.96795 * 14 13 11 38 38 H 1.08996 * 110.46053 * 118.69998 * 14 13 11 39 39 H 1.09010 * 109.69075 * 107.67450 * 17 9 7 40 40 H 1.08997 * 109.93630 * 346.86256 * 17 9 7 41 41 H 1.09002 * 109.46962 * 60.00964 * 21 19 18 42 42 H 1.08997 * 109.47752 * 300.00369 * 21 19 18 43 43 H 1.07988 * 125.04055 * 0.02562 * 23 22 21 44 44 H 1.08001 * 120.10886 * 0.02562 * 27 26 24 45 45 H 1.08000 * 119.66586 * 180.02562 * 28 27 26 46 46 H 1.07997 * 119.73807 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.11710 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4029 2.1011 -1.3958 5 1 1.4982 2.6235 0.7926 6 1 3.5919 1.4146 0.6031 7 6 2.0102 -1.2022 -0.0005 8 1 3.0575 -1.2209 -0.2636 9 7 1.3669 -2.3643 0.3326 10 6 1.8508 -3.6610 -0.1674 11 6 1.8988 -4.6408 1.0182 12 1 2.2862 -5.6199 0.7366 13 6 2.7352 -3.9853 2.1346 14 6 1.7179 -3.1854 2.9745 15 6 0.3568 -3.4274 2.2837 16 1 -0.4676 -3.4532 2.9964 17 6 0.1744 -2.3419 1.2084 18 7 0.5276 -4.7203 1.5775 19 6 -0.3552 -5.7335 1.4733 20 8 -1.4449 -5.6447 1.9981 21 6 0.0119 -6.9765 0.7045 22 6 -1.1403 -7.9473 0.7393 23 6 -1.3049 -8.9605 1.6045 24 7 -2.4692 -9.6245 1.3288 25 1 -2.8001 -10.3949 1.8165 26 6 -3.0977 -9.0403 0.2521 27 6 -4.2810 -9.3097 -0.4281 28 6 -4.6503 -8.5227 -1.4965 29 6 -3.8528 -7.4618 -1.9037 30 6 -2.6865 -7.1796 -1.2503 31 6 -2.2934 -7.9637 -0.1639 32 1 -0.4851 0.8401 0.0004 33 1 2.8491 -3.5439 -0.5892 34 1 1.1707 -4.0394 -0.9306 35 1 3.4840 -3.3174 1.7086 36 1 3.2142 -4.7499 2.7462 37 1 1.9664 -2.1242 2.9614 38 1 1.6945 -3.5561 3.9992 39 1 -0.7181 -2.5533 0.6192 40 1 0.0803 -1.3653 1.6832 41 1 0.8897 -7.4377 1.1572 42 1 0.2328 -6.7123 -0.3296 43 1 -0.6205 -9.2135 2.4005 44 1 -4.9084 -10.1326 -0.1188 45 1 -5.5696 -8.7331 -2.0230 46 1 -4.1566 -6.8547 -2.7437 47 1 -2.0709 -6.3530 -1.5729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018212096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:52 Heat of formation + Delta-G solvation = 63.554995 kcal Electronic energy + Delta-G solvation = -29801.008102 eV Core-core repulsion = 25949.996282 eV Total energy + Delta-G solvation = -3851.011820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24922 -39.96488 -37.66687 -36.81032 -34.02096 -33.01438 -31.22506 -31.11843 -30.28998 -29.90312 -29.21222 -27.07448 -26.01811 -23.63308 -22.97263 -22.79551 -21.72074 -20.99740 -20.16606 -19.22842 -18.09616 -17.65939 -17.17733 -16.37978 -15.98213 -15.45274 -15.19752 -14.88544 -14.56260 -14.44211 -14.17094 -13.97074 -13.72182 -13.43924 -13.09923 -12.93252 -12.76708 -12.66919 -12.43662 -12.06081 -11.95598 -11.79570 -11.61653 -11.45468 -11.25211 -11.10987 -10.82638 -10.75200 -10.52695 -10.46529 -10.28236 -9.96599 -9.79731 -9.64497 -9.62550 -9.18383 -8.53227 -8.15276 -8.10340 -7.59430 -6.68861 -5.79172 -3.21272 1.19281 1.70552 2.64786 3.11808 3.18492 3.36307 3.43811 3.44992 3.59486 4.01855 4.46689 4.75191 4.80887 4.96539 4.98930 5.13546 5.15787 5.24861 5.30054 5.37625 5.40955 5.45967 5.58907 5.59556 5.64114 5.73728 5.82988 5.84251 5.90390 5.96393 6.15065 6.19044 6.25622 6.38148 6.43272 6.48682 6.52658 6.62290 6.68217 6.68962 6.75335 6.81178 6.84128 7.00560 7.21588 7.33971 7.52663 7.59906 7.75665 8.24262 8.36607 8.75740 9.15592 9.79617 10.36885 11.28976 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.003074 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.870000 B = 9106.196838 C =10069.979229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.138 3.862 11 C 0.107 3.893 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.113 4.113 15 C 0.105 3.895 16 H 0.085 0.915 17 C 0.175 3.825 18 N -0.609 5.609 19 C 0.529 3.471 20 O -0.545 6.545 21 C -0.061 4.061 22 C -0.142 4.142 23 C 0.057 3.943 24 N -0.596 5.596 25 H 0.413 0.587 26 C 0.095 3.905 27 C -0.136 4.136 28 C -0.101 4.101 29 C -0.149 4.149 30 C -0.062 4.062 31 C -0.089 4.089 32 H 0.254 0.746 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.025 0.975 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.167 0.833 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -19.431 2.100 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.011 3.989 11 C 0.002 3.998 12 H 0.103 0.897 13 C -0.149 4.149 14 C -0.151 4.151 15 C 0.001 3.999 16 H 0.103 0.897 17 C 0.049 3.951 18 N -0.343 5.343 19 C 0.318 3.682 20 O -0.422 6.422 21 C -0.101 4.101 22 C -0.150 4.150 23 C -0.069 4.069 24 N -0.199 5.199 25 H 0.250 0.750 26 C -0.012 4.012 27 C -0.156 4.156 28 C -0.120 4.120 29 C -0.169 4.169 30 C -0.081 4.081 31 C -0.093 4.093 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.184 0.816 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.573 -19.401 2.443 19.617 hybrid contribution 0.224 0.610 0.196 0.679 sum -1.349 -18.791 2.639 19.023 Atomic orbital electron populations 1.70034 1.05212 1.25521 1.53903 1.25015 0.95258 0.98308 1.01021 0.86308 0.79126 0.83896 0.77589 1.21559 1.21620 1.20445 1.19143 0.92319 0.84443 1.42194 0.91462 1.44229 1.32032 1.00850 1.54107 1.21429 0.98137 0.87096 0.92235 1.22906 0.81921 0.98814 0.96187 0.89654 1.22225 0.97903 0.98537 0.96243 1.22315 0.94406 1.01661 0.96728 1.23175 0.97266 0.83761 0.95650 0.89674 1.21392 0.88601 0.95852 0.89302 1.49255 1.15286 1.16694 1.53052 1.20108 0.83841 0.83333 0.80948 1.90678 1.21996 1.80991 1.48584 1.19902 0.96156 0.92196 1.01875 1.19612 0.97383 0.98907 0.99089 1.21467 0.89581 0.95494 1.00380 1.41612 1.20141 1.29664 1.28515 0.75048 1.18221 0.95753 0.96002 0.91217 1.19946 0.95158 1.02367 0.98166 1.20760 0.99447 0.95401 0.96421 1.20623 0.95637 0.99035 1.01561 1.20341 0.96343 0.97743 0.93639 1.19004 0.95527 0.96950 0.97863 0.93571 0.91959 0.96374 0.89981 0.93037 0.89687 0.93271 0.95722 0.89128 0.88791 0.88443 0.81577 0.86616 0.86030 0.86106 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 11.12 55.49 0.62 -25.19 16 2 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 3 Si 0.90 21.07 29.58 -169.99 -5.03 16.05 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.50 9.65 -15.06 -0.15 -6.64 16 8 H 0.07 1.69 7.87 -52.49 -0.41 1.28 16 9 N -0.59 -13.87 2.31 -170.42 -0.39 -14.26 16 10 C 0.14 2.67 6.01 -3.22 -0.02 2.65 16 11 C 0.11 1.69 3.96 -65.89 -0.26 1.43 16 12 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 13 C -0.11 -1.70 6.16 -25.47 -0.16 -1.86 16 14 C -0.11 -1.95 6.19 -25.25 -0.16 -2.10 16 15 C 0.11 2.09 4.12 -65.67 -0.27 1.82 16 16 H 0.09 1.74 7.93 -51.93 -0.41 1.33 16 17 C 0.17 4.16 4.62 -2.77 -0.01 4.15 16 18 N -0.61 -10.99 2.74 -153.29 -0.42 -11.41 16 19 C 0.53 9.59 7.92 -10.99 -0.09 9.51 16 20 O -0.54 -12.01 16.35 5.56 0.09 -11.92 16 21 C -0.06 -0.83 5.23 -29.03 -0.15 -0.98 16 22 C -0.14 -2.03 4.81 -102.71 -0.49 -2.53 16 23 C 0.06 0.66 11.73 -16.73 -0.20 0.46 16 24 N -0.60 -6.45 6.07 -10.65 -0.06 -6.51 16 25 H 0.41 2.97 8.96 -40.82 -0.37 2.60 16 26 C 0.09 1.27 7.28 -83.99 -0.61 0.66 16 27 C -0.14 -1.59 10.08 -39.43 -0.40 -1.99 16 28 C -0.10 -1.17 10.01 -39.54 -0.40 -1.57 16 29 C -0.15 -1.95 9.97 -39.94 -0.40 -2.34 16 30 C -0.06 -0.94 10.05 -39.64 -0.40 -1.33 16 31 C -0.09 -1.36 6.35 -105.14 -0.67 -2.03 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.06 1.13 7.96 -51.92 -0.41 0.71 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 1.33 7.83 -51.93 -0.41 0.93 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.62 7.84 -51.93 -0.41 1.21 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.09 2.37 6.30 -51.93 -0.33 2.05 16 41 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 42 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -33.55 378.02 -11.32 -44.87 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.91 Total: 5.40 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.91 Total: -2.72 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.26 Total: -57.37 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.55 -11.32 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018212096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.422 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds