Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48500 * 109.46925 * 274.48034 * 3 2 1 5 5 H 1.48497 * 109.47202 * 34.48143 * 3 2 1 6 6 H 1.48500 * 109.46850 * 154.48302 * 3 2 1 7 7 C 1.38816 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99598 * 163.66712 * 7 2 1 9 9 N 1.36940 * 120.00015 * 343.66025 * 7 2 1 10 10 C 1.47155 * 120.70843 * 154.54528 * 9 7 2 11 11 C 1.53883 * 108.02904 * 132.75711 * 10 9 7 12 12 H 1.09004 * 112.57962 * 182.22659 * 11 10 9 13 13 C 1.54132 * 107.71252 * 306.32515 * 11 10 9 14 14 C 1.54275 * 104.88956 * 89.41226 * 13 11 10 15 15 C 1.54542 * 104.84899 * 359.80571 * 14 13 11 16 16 H 1.09004 * 112.18318 * 146.41180 * 15 14 13 17 17 C 1.47975 * 120.64133 * 334.24978 * 9 7 2 18 18 N 1.48302 * 107.20808 * 58.36233 * 11 10 9 19 19 C 1.34784 * 128.07651 * 106.70552 * 18 11 10 20 20 O 1.21280 * 120.00136 * 179.68010 * 19 18 11 21 21 C 1.50694 * 119.99845 * 359.67422 * 19 18 11 22 22 C 1.50708 * 109.47074 * 180.02562 * 21 19 18 23 23 C 1.34240 * 126.49829 * 265.02890 * 22 21 19 24 24 N 1.36832 * 109.92214 * 179.97438 * 23 22 21 25 25 H 0.97007 * 125.05824 * 179.72978 * 24 23 22 26 26 C 1.37682 * 109.88144 * 0.02562 * 24 23 22 27 27 C 1.39123 * 133.51028 * 179.97438 * 26 24 23 28 28 C 1.37745 * 119.77916 * 179.97438 * 27 26 24 29 29 C 1.38830 * 120.66852 * 0.03760 * 28 27 26 30 30 C 1.36629 * 120.52669 * 359.97438 * 29 28 27 31 31 C 1.39629 * 119.76619 * 359.97438 * 30 29 28 32 32 H 0.97006 * 120.00345 * 359.97438 * 1 2 3 33 33 H 1.09010 * 109.75179 * 13.12409 * 10 9 7 34 34 H 1.09002 * 109.79304 * 252.41279 * 10 9 7 35 35 H 1.09005 * 110.50325 * 330.47365 * 13 11 10 36 36 H 1.09001 * 110.27499 * 208.23645 * 13 11 10 37 37 H 1.09002 * 110.36181 * 240.96795 * 14 13 11 38 38 H 1.08996 * 110.46053 * 118.69998 * 14 13 11 39 39 H 1.09010 * 109.69075 * 107.67450 * 17 9 7 40 40 H 1.08997 * 109.93630 * 346.86256 * 17 9 7 41 41 H 1.09002 * 109.46962 * 60.00964 * 21 19 18 42 42 H 1.08997 * 109.47752 * 300.00369 * 21 19 18 43 43 H 1.07988 * 125.04055 * 0.02562 * 23 22 21 44 44 H 1.08001 * 120.10886 * 0.02562 * 27 26 24 45 45 H 1.08000 * 119.66586 * 180.02562 * 28 27 26 46 46 H 1.07997 * 119.73807 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.11710 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4029 2.1011 -1.3958 5 1 1.4982 2.6235 0.7926 6 1 3.5919 1.4146 0.6031 7 6 2.0102 -1.2022 -0.0005 8 1 3.0575 -1.2209 -0.2636 9 7 1.3669 -2.3643 0.3326 10 6 1.8508 -3.6610 -0.1674 11 6 1.8988 -4.6408 1.0182 12 1 2.2862 -5.6199 0.7366 13 6 2.7352 -3.9853 2.1346 14 6 1.7179 -3.1854 2.9745 15 6 0.3568 -3.4274 2.2837 16 1 -0.4676 -3.4532 2.9964 17 6 0.1744 -2.3419 1.2084 18 7 0.5276 -4.7203 1.5775 19 6 -0.3552 -5.7335 1.4733 20 8 -1.4449 -5.6447 1.9981 21 6 0.0119 -6.9765 0.7045 22 6 -1.1403 -7.9473 0.7393 23 6 -1.3049 -8.9605 1.6045 24 7 -2.4692 -9.6245 1.3288 25 1 -2.8001 -10.3949 1.8165 26 6 -3.0977 -9.0403 0.2521 27 6 -4.2810 -9.3097 -0.4281 28 6 -4.6503 -8.5227 -1.4965 29 6 -3.8528 -7.4618 -1.9037 30 6 -2.6865 -7.1796 -1.2503 31 6 -2.2934 -7.9637 -0.1639 32 1 -0.4851 0.8401 0.0004 33 1 2.8491 -3.5439 -0.5892 34 1 1.1707 -4.0394 -0.9306 35 1 3.4840 -3.3174 1.7086 36 1 3.2142 -4.7499 2.7462 37 1 1.9664 -2.1242 2.9614 38 1 1.6945 -3.5561 3.9992 39 1 -0.7181 -2.5533 0.6192 40 1 0.0803 -1.3653 1.6832 41 1 0.8897 -7.4377 1.1572 42 1 0.2328 -6.7123 -0.3296 43 1 -0.6205 -9.2135 2.4005 44 1 -4.9084 -10.1326 -0.1188 45 1 -5.5696 -8.7331 -2.0230 46 1 -4.1566 -6.8547 -2.7437 47 1 -2.0709 -6.3530 -1.5729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018212096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 44.097050 kcal Electronic energy + Delta-G solvation = -29801.851862 eV Core-core repulsion = 25949.996282 eV Total energy + Delta-G solvation = -3851.855580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19975 -41.43291 -39.15767 -37.75918 -35.87308 -34.08975 -32.97878 -32.54330 -31.91463 -30.96727 -30.16592 -28.32377 -27.68087 -25.23677 -24.67252 -23.75065 -22.66921 -22.53374 -21.53186 -20.41686 -19.57109 -18.79262 -18.60306 -17.71221 -17.29139 -16.82255 -16.45005 -16.36565 -16.04152 -15.84967 -15.34198 -15.21185 -14.95697 -14.75505 -14.69237 -14.36840 -14.18106 -13.83021 -13.68241 -13.56050 -13.32885 -13.12430 -12.89378 -12.80334 -12.66350 -12.56193 -12.29912 -12.23362 -12.09076 -12.00993 -11.71683 -11.68909 -11.51739 -11.09856 -10.86433 -10.58454 -10.42424 -9.70816 -9.10958 -8.65083 -8.53927 -7.83419 -5.28687 0.23025 0.71473 1.48207 1.50231 1.59606 1.63164 1.80000 2.24087 2.32244 2.53403 3.00208 3.31911 3.52654 3.73477 3.82219 3.90482 3.92947 4.05195 4.13009 4.19845 4.22467 4.29712 4.38396 4.44956 4.45457 4.60930 4.63938 4.67849 4.76038 4.83057 4.89144 4.91230 4.97115 5.03824 5.07819 5.13623 5.19826 5.23952 5.30494 5.43810 5.57285 5.57730 5.65177 5.69963 5.71043 5.78558 5.85007 6.26246 6.35086 6.78121 6.84638 7.11618 7.34039 7.83016 8.37884 9.22956 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.003074 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.870000 B = 9106.196838 C =10069.979229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.967 3.033 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.261 1.261 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.117 3.883 12 H 0.138 0.862 13 C -0.103 4.103 14 C -0.105 4.105 15 C 0.108 3.892 16 H 0.070 0.930 17 C 0.191 3.809 18 N -0.611 5.611 19 C 0.524 3.476 20 O -0.592 6.592 21 C -0.047 4.047 22 C -0.187 4.187 23 C 0.078 3.922 24 N -0.583 5.583 25 H 0.432 0.568 26 C 0.076 3.924 27 C -0.131 4.131 28 C -0.109 4.109 29 C -0.156 4.156 30 C -0.099 4.099 31 C -0.121 4.121 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.001 0.999 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.074 0.926 39 H -0.029 1.029 40 H 0.058 0.942 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.206 0.794 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.131 0.869 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -22.843 3.200 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.218 1.218 5 H -0.227 1.227 6 H -0.185 1.185 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.004 3.996 11 C 0.014 3.986 12 H 0.155 0.845 13 C -0.141 4.141 14 C -0.143 4.143 15 C 0.003 3.997 16 H 0.088 0.912 17 C 0.064 3.936 18 N -0.344 5.344 19 C 0.315 3.685 20 O -0.473 6.473 21 C -0.087 4.087 22 C -0.194 4.194 23 C -0.050 4.050 24 N -0.187 5.187 25 H 0.272 0.728 26 C -0.031 4.031 27 C -0.151 4.151 28 C -0.128 4.128 29 C -0.175 4.175 30 C -0.118 4.118 31 C -0.126 4.126 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.019 0.981 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.093 0.907 39 H -0.011 1.011 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.223 0.777 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.149 0.851 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.698 -22.871 3.535 23.153 hybrid contribution -0.559 1.613 -0.197 1.718 sum 0.139 -21.258 3.339 21.519 Atomic orbital electron populations 1.70235 1.06988 1.25547 1.56379 1.25803 0.95850 1.01643 1.01864 0.85268 0.78414 0.79725 0.77084 1.21785 1.22700 1.18544 1.19577 0.92883 0.85225 1.40075 0.90153 1.44431 1.31438 1.02158 1.54366 1.21692 0.98300 0.85913 0.93697 1.22997 0.80858 1.00252 0.94542 0.84479 1.22234 0.96914 0.99064 0.95892 1.22224 0.92957 1.00880 0.98286 1.22843 0.98791 0.83804 0.94270 0.91152 1.20978 0.87107 0.95826 0.89683 1.49364 1.16423 1.15754 1.52820 1.21079 0.82884 0.84365 0.80199 1.90646 1.23974 1.82090 1.50578 1.19878 0.97663 0.89872 1.01239 1.19827 0.98082 1.00796 1.00710 1.22052 0.89498 0.93839 0.99565 1.41643 1.19621 1.29810 1.27662 0.72835 1.18485 0.96321 0.96057 0.92228 1.20375 0.94712 1.02707 0.97345 1.21130 1.00227 0.94683 0.96722 1.20889 0.95236 0.99736 1.01667 1.20398 0.97634 0.98396 0.95363 1.19394 0.96942 0.97901 0.98355 0.94504 0.90049 0.98058 0.90543 0.88896 0.92057 0.90727 1.01130 0.92414 0.84483 0.88364 0.77719 0.83391 0.82995 0.85092 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 11.12 21.65 0.24 -57.08 16 2 C -0.06 -3.16 4.96 84.86 0.42 -2.74 16 3 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.25 -12.95 9.65 84.03 0.81 -12.14 16 8 H 0.08 3.95 7.87 -2.91 -0.02 3.92 16 9 N -0.60 -29.00 2.31 -693.09 -1.60 -30.60 16 10 C 0.13 4.92 6.01 86.55 0.52 5.44 16 11 C 0.12 3.37 3.96 45.33 0.18 3.55 16 12 H 0.14 2.64 7.42 -2.38 -0.02 2.62 16 13 C -0.10 -2.78 6.16 31.41 0.19 -2.59 16 14 C -0.11 -3.49 6.19 31.55 0.20 -3.30 16 15 C 0.11 4.40 4.12 45.47 0.19 4.59 16 16 H 0.07 3.04 7.93 -2.39 -0.02 3.02 16 17 C 0.19 9.72 4.62 86.39 0.40 10.12 16 18 N -0.61 -21.59 2.74 -757.28 -2.08 -23.67 16 19 C 0.52 18.79 7.92 87.65 0.69 19.48 16 20 O -0.59 -26.84 16.35 -3.03 -0.05 -26.89 16 21 C -0.05 -1.19 5.23 29.10 0.15 -1.03 16 22 C -0.19 -5.09 4.81 -18.63 -0.09 -5.18 16 23 C 0.08 1.57 11.73 83.00 0.97 2.54 16 24 N -0.58 -11.04 6.07 -187.62 -1.14 -12.18 16 25 H 0.43 4.72 8.96 -92.70 -0.83 3.89 16 26 C 0.08 1.94 7.28 39.03 0.28 2.23 16 27 C -0.13 -2.82 10.08 22.37 0.23 -2.60 16 28 C -0.11 -2.40 10.01 22.29 0.22 -2.18 16 29 C -0.16 -4.21 9.97 22.03 0.22 -3.99 16 30 C -0.10 -3.19 10.05 22.23 0.22 -2.97 16 31 C -0.12 -3.76 6.35 -20.20 -0.13 -3.89 16 32 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 33 H 0.08 2.76 7.96 -2.38 -0.02 2.74 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.08 2.21 7.83 -2.38 -0.02 2.19 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.33 7.84 -2.39 -0.02 2.31 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H -0.03 -1.77 8.14 -2.38 -0.02 -1.79 16 40 H 0.06 3.28 6.30 -2.39 -0.02 3.27 16 41 H 0.14 2.23 8.03 -2.39 -0.02 2.21 16 42 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.21 2.38 8.06 -2.92 -0.02 2.35 16 44 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 46 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.10 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -80.51 378.02 3.24 -77.27 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.15 Total: 21.35 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.68 Total: 5.33 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -4.58 Total: -123.53 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -80.51 3.24 -77.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018212096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.364 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds