Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47289 * 240.00496 * 3 2 1 5 5 H 1.48508 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99999 * 3 2 1 7 7 C 1.38815 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99591 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47075 * 85.00119 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99940 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21604 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.47443 * 119.99998 * 179.97438 * 15 14 13 18 18 C 1.38950 * 121.17162 * 359.71501 * 17 15 14 19 19 N 1.32206 * 121.32179 * 179.72710 * 18 17 15 20 20 C 1.31193 * 123.68989 * 0.60274 * 19 18 17 21 21 C 1.40381 * 120.92000 * 359.67474 * 20 19 18 22 22 C 1.40393 * 122.14349 * 179.97438 * 21 20 19 23 23 C 1.36232 * 119.48494 * 180.02562 * 22 21 20 24 24 C 1.39290 * 121.10681 * 0.03489 * 23 22 21 25 25 C 1.36443 * 120.94761 * 0.02562 * 24 23 22 26 26 C 1.39687 * 119.43629 * 359.97438 * 25 24 23 27 27 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 28 28 C 1.52997 * 109.46817 * 60.00194 * 27 13 12 29 29 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00553 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47020 * 324.99764 * 10 9 7 32 32 H 1.08996 * 109.46929 * 299.99044 * 11 10 9 33 33 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 37 37 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 38 38 H 1.08001 * 119.33958 * 0.02562 * 18 17 15 39 39 H 1.07999 * 119.53936 * 179.69545 * 20 19 18 40 40 H 1.07997 * 120.25558 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.44507 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.52403 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.27954 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47662 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.47075 * 300.00932 * 27 13 12 46 46 H 1.09002 * 109.47153 * 60.00231 * 28 27 13 47 47 H 1.09001 * 109.47289 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4219 -4.0356 1.4365 12 6 1.1437 -4.1848 2.2639 13 6 0.2665 -5.2802 1.6542 14 7 -0.9578 -5.4225 2.4461 15 6 -1.6289 -6.5913 2.4450 16 8 -1.2185 -7.5275 1.7863 17 6 -2.8608 -6.7348 3.2425 18 6 -3.3483 -5.6830 4.0085 19 7 -4.4554 -5.8067 4.7204 20 6 -5.1665 -6.9078 4.7746 21 6 -4.7844 -8.0496 4.0527 22 6 -5.5257 -9.2412 4.0924 23 6 -5.1047 -10.3171 3.3705 24 6 -3.9502 -10.2554 2.5938 25 6 -3.2053 -9.1138 2.5333 26 6 -3.6084 -7.9918 3.2612 27 6 -0.0975 -4.9013 0.2172 28 6 1.1808 -4.7522 -0.6102 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9688 -3.5506 -0.5900 32 1 3.0470 -3.2554 1.8707 33 1 2.9666 -4.9798 1.4364 34 1 0.5987 -3.2408 2.2639 35 1 1.4030 -4.4551 3.2875 36 1 0.8114 -6.2241 1.6541 37 1 -1.2854 -4.6756 2.9713 38 1 -2.8147 -4.7440 4.0187 39 1 -6.0586 -6.9362 5.3827 40 1 -6.4222 -9.3046 4.6912 41 1 -5.6757 -11.2333 3.4012 42 1 -3.6396 -11.1240 2.0319 43 1 -2.3117 -9.0780 1.9278 44 1 -0.7228 -5.6814 -0.2170 45 1 -0.6424 -3.9573 0.2173 46 1 1.7258 -5.6961 -0.6102 47 1 0.9216 -4.4818 -1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026609362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = 23.357010 kcal Electronic energy + Delta-G solvation = -28769.462709 eV Core-core repulsion = 24916.707774 eV Total energy + Delta-G solvation = -3852.754935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13109 -39.66231 -37.98298 -37.62016 -34.74080 -33.19419 -32.71494 -31.44301 -30.69571 -30.27889 -29.65362 -27.61576 -25.16018 -23.77053 -23.63757 -23.04631 -22.23593 -21.52527 -20.64041 -18.75977 -18.21545 -17.65374 -17.53675 -17.20926 -16.28803 -15.84349 -15.22832 -15.15075 -14.92373 -14.59207 -14.35709 -14.13086 -13.99630 -13.81003 -13.52101 -13.48050 -13.04708 -12.71363 -12.45200 -12.37859 -12.19497 -12.08207 -11.70771 -11.68000 -11.66555 -10.88462 -10.79083 -10.64090 -10.38614 -10.32994 -10.23125 -10.12416 -10.11336 -9.71764 -9.51016 -9.41045 -9.37830 -8.96912 -8.82536 -8.37345 -6.93850 -5.76461 -3.04021 -0.20431 0.60631 1.41191 2.60442 3.04182 3.08988 3.43491 3.48596 3.48998 3.83260 3.97780 4.23562 4.39255 4.40912 4.57024 4.60051 4.75303 4.88318 4.95796 5.11692 5.21220 5.21688 5.34475 5.45477 5.47405 5.58813 5.67629 5.69633 5.74095 5.79695 5.83175 5.97332 6.04699 6.07031 6.10187 6.16948 6.22476 6.29945 6.40376 6.46251 6.52899 6.62128 6.69186 6.73686 6.88888 6.97932 7.07002 7.50471 7.60364 7.70718 8.17193 8.43094 9.54194 10.13060 10.48011 11.46242 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.002462 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.840705 B =11368.883355 C =12311.255586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.128 4.128 12 C -0.118 4.118 13 C 0.150 3.850 14 N -0.713 5.713 15 C 0.567 3.433 16 O -0.537 6.537 17 C -0.172 4.172 18 C 0.122 3.878 19 N -0.495 5.495 20 C 0.174 3.826 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.110 4.110 26 C 0.012 3.988 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.166 0.834 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -20.297 9.327 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.169 4.169 12 C -0.156 4.156 13 C 0.047 3.953 14 N -0.362 5.362 15 C 0.354 3.646 16 O -0.416 6.416 17 C -0.177 4.177 18 C -0.022 4.022 19 N -0.202 5.202 20 C 0.002 3.998 21 C -0.125 4.125 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.119 4.119 25 C -0.127 4.127 26 C 0.007 3.993 27 C -0.163 4.163 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.183 0.817 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.659 -19.976 9.254 24.041 hybrid contribution 0.168 0.701 -0.144 0.735 sum -9.491 -19.275 9.109 23.336 Atomic orbital electron populations 1.69643 1.05037 1.25667 1.57971 1.24707 0.95479 0.97549 1.03273 0.86305 0.78523 0.83791 0.77785 1.21382 1.21805 1.21391 1.19214 0.90961 0.84239 1.42305 0.91327 1.42482 1.05725 0.99582 1.88480 1.20257 0.94388 0.86531 0.92737 1.22084 0.95910 0.99832 0.99109 1.21681 0.97302 0.98666 0.97963 1.21127 0.83709 0.99840 0.90659 1.46123 1.27263 1.13748 1.49085 1.17784 0.82834 0.83031 0.80991 1.90617 1.68316 1.38953 1.43722 1.21975 0.98017 0.95280 1.02425 1.22834 0.91510 0.97562 0.90289 1.67131 1.06614 1.26745 1.19736 1.23308 0.96921 0.86623 0.92933 1.19026 0.96532 0.96612 1.00286 1.20953 0.99186 0.91723 0.99124 1.20994 0.96923 0.98857 0.96991 1.21195 0.94487 0.98345 0.97829 1.21834 1.01408 0.91232 0.98218 1.18924 0.92662 0.92895 0.94854 1.21827 0.98515 1.01796 0.94172 1.21737 0.96014 0.98650 0.99317 0.93549 0.78140 0.93351 0.91627 0.93566 0.89860 0.92924 0.89846 0.76496 0.82272 0.81684 0.84773 0.85532 0.85374 0.81676 0.92482 0.90831 0.92399 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.05 4.28 -53.42 -0.23 -17.28 16 10 C 0.17 3.25 3.10 -67.93 -0.21 3.04 16 11 C -0.13 -2.16 5.61 -26.73 -0.15 -2.31 16 12 C -0.12 -1.85 5.23 -26.73 -0.14 -1.99 16 13 C 0.15 2.24 2.45 -67.93 -0.17 2.07 16 14 N -0.71 -9.56 5.03 -54.88 -0.28 -9.83 16 15 C 0.57 8.11 7.74 -12.51 -0.10 8.01 16 16 O -0.54 -8.84 13.40 5.27 0.07 -8.77 16 17 C -0.17 -2.21 6.07 -102.66 -0.62 -2.83 16 18 C 0.12 1.43 10.71 -17.13 -0.18 1.25 16 19 N -0.50 -5.73 10.22 -12.58 -0.13 -5.85 16 20 C 0.17 1.63 11.00 -17.02 -0.19 1.44 16 21 C -0.12 -1.23 5.74 -106.89 -0.61 -1.85 16 22 C -0.09 -0.68 9.82 -39.49 -0.39 -1.06 16 23 C -0.12 -0.89 9.94 -39.91 -0.40 -1.28 16 24 C -0.10 -0.89 9.96 -39.84 -0.40 -1.29 16 25 C -0.11 -1.29 9.32 -39.69 -0.37 -1.66 16 26 C 0.01 0.15 5.91 -104.74 -0.62 -0.47 16 27 C -0.12 -2.03 5.32 -26.73 -0.14 -2.18 16 28 C -0.12 -1.97 5.61 -26.73 -0.15 -2.12 16 29 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.64 6.06 -40.82 -0.25 9.40 16 31 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.52 7.60 -51.93 -0.39 1.13 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 37 H 0.40 4.65 6.71 -40.82 -0.27 4.38 16 38 H 0.16 1.56 6.44 -52.49 -0.34 1.22 16 39 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.17 2.21 5.24 -52.49 -0.28 1.93 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.35 6.51 -51.93 -0.34 1.01 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -31.98 377.26 -10.71 -42.69 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.45 Total: 13.26 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -5.08 Total: -10.19 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.09 Total: -59.72 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.98 -10.71 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026609362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.045 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds