Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47289 * 240.00496 * 3 2 1 5 5 H 1.48508 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99999 * 3 2 1 7 7 C 1.38815 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99591 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47075 * 85.00119 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99940 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21604 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.47443 * 119.99998 * 179.97438 * 15 14 13 18 18 C 1.38950 * 121.17162 * 359.71501 * 17 15 14 19 19 N 1.32206 * 121.32179 * 179.72710 * 18 17 15 20 20 C 1.31193 * 123.68989 * 0.60274 * 19 18 17 21 21 C 1.40381 * 120.92000 * 359.67474 * 20 19 18 22 22 C 1.40393 * 122.14349 * 179.97438 * 21 20 19 23 23 C 1.36232 * 119.48494 * 180.02562 * 22 21 20 24 24 C 1.39290 * 121.10681 * 0.03489 * 23 22 21 25 25 C 1.36443 * 120.94761 * 0.02562 * 24 23 22 26 26 C 1.39687 * 119.43629 * 359.97438 * 25 24 23 27 27 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 28 28 C 1.52997 * 109.46817 * 60.00194 * 27 13 12 29 29 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00553 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47020 * 324.99764 * 10 9 7 32 32 H 1.08996 * 109.46929 * 299.99044 * 11 10 9 33 33 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 37 37 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 38 38 H 1.08001 * 119.33958 * 0.02562 * 18 17 15 39 39 H 1.07999 * 119.53936 * 179.69545 * 20 19 18 40 40 H 1.07997 * 120.25558 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.44507 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.52403 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.27954 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47662 * 180.02562 * 27 13 12 45 45 H 1.09002 * 109.47075 * 300.00932 * 27 13 12 46 46 H 1.09002 * 109.47153 * 60.00231 * 28 27 13 47 47 H 1.09001 * 109.47289 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4219 -4.0356 1.4365 12 6 1.1437 -4.1848 2.2639 13 6 0.2665 -5.2802 1.6542 14 7 -0.9578 -5.4225 2.4461 15 6 -1.6289 -6.5913 2.4450 16 8 -1.2185 -7.5275 1.7863 17 6 -2.8608 -6.7348 3.2425 18 6 -3.3483 -5.6830 4.0085 19 7 -4.4554 -5.8067 4.7204 20 6 -5.1665 -6.9078 4.7746 21 6 -4.7844 -8.0496 4.0527 22 6 -5.5257 -9.2412 4.0924 23 6 -5.1047 -10.3171 3.3705 24 6 -3.9502 -10.2554 2.5938 25 6 -3.2053 -9.1138 2.5333 26 6 -3.6084 -7.9918 3.2612 27 6 -0.0975 -4.9013 0.2172 28 6 1.1808 -4.7522 -0.6102 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9688 -3.5506 -0.5900 32 1 3.0470 -3.2554 1.8707 33 1 2.9666 -4.9798 1.4364 34 1 0.5987 -3.2408 2.2639 35 1 1.4030 -4.4551 3.2875 36 1 0.8114 -6.2241 1.6541 37 1 -1.2854 -4.6756 2.9713 38 1 -2.8147 -4.7440 4.0187 39 1 -6.0586 -6.9362 5.3827 40 1 -6.4222 -9.3046 4.6912 41 1 -5.6757 -11.2333 3.4012 42 1 -3.6396 -11.1240 2.0319 43 1 -2.3117 -9.0780 1.9278 44 1 -0.7228 -5.6814 -0.2170 45 1 -0.6424 -3.9573 0.2173 46 1 1.7258 -5.6961 -0.6102 47 1 0.9216 -4.4818 -1.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026609362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 4.192434 kcal Electronic energy + Delta-G solvation = -28770.293748 eV Core-core repulsion = 24916.707774 eV Total energy + Delta-G solvation = -3853.585974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97755 -40.77388 -39.32240 -38.35914 -36.18493 -34.66878 -33.79256 -32.22546 -32.14762 -31.66266 -30.72912 -29.08077 -26.10953 -25.51476 -24.52516 -23.94994 -23.59570 -22.71269 -21.73071 -20.15194 -19.23453 -19.01931 -18.53512 -18.43337 -17.28822 -16.75516 -16.57435 -16.26283 -16.15733 -15.87477 -15.54334 -15.36028 -15.29014 -14.91819 -14.74219 -14.42634 -14.39001 -13.77037 -13.71846 -13.47342 -13.34590 -13.18081 -13.05403 -12.91583 -12.79660 -12.59393 -12.43219 -12.22603 -12.05807 -11.83310 -11.67707 -11.37472 -11.17624 -11.11703 -10.95662 -10.83256 -10.39986 -10.13802 -10.07675 -9.14835 -8.92392 -7.89013 -5.14981 -0.98514 -0.14213 0.65733 1.48733 1.50418 1.56265 1.72290 2.01204 2.18642 2.59711 3.04941 3.20421 3.44093 3.48745 3.61198 3.69558 3.78545 3.86605 3.89097 3.98637 4.06934 4.14761 4.26538 4.30841 4.34159 4.43333 4.48559 4.57805 4.62455 4.65467 4.71068 4.75804 4.81060 4.99463 5.03254 5.09770 5.11172 5.24435 5.29642 5.31710 5.40275 5.45509 5.48738 5.54066 5.59024 5.60505 5.64012 5.90474 6.33822 6.42366 6.80779 7.09098 7.40494 8.19069 8.42449 9.34290 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.002462 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.840705 B =11368.883355 C =12311.255586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.074 0.926 9 N -0.729 5.729 10 C 0.164 3.836 11 C -0.122 4.122 12 C -0.108 4.108 13 C 0.161 3.839 14 N -0.709 5.709 15 C 0.567 3.433 16 O -0.564 6.564 17 C -0.202 4.202 18 C 0.126 3.874 19 N -0.522 5.522 20 C 0.189 3.811 21 C -0.139 4.139 22 C -0.074 4.074 23 C -0.124 4.124 24 C -0.088 4.088 25 C -0.148 4.148 26 C -0.009 4.009 27 C -0.116 4.116 28 C -0.110 4.110 29 H 0.248 0.752 30 H 0.374 0.626 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.168 0.832 39 H 0.208 0.792 40 H 0.176 0.824 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -22.403 10.907 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.370 5.370 10 C 0.056 3.944 11 C -0.163 4.163 12 C -0.146 4.146 13 C 0.057 3.943 14 N -0.359 5.359 15 C 0.355 3.645 16 O -0.445 6.445 17 C -0.207 4.207 18 C -0.018 4.018 19 N -0.230 5.230 20 C 0.018 3.982 21 C -0.141 4.141 22 C -0.094 4.094 23 C -0.141 4.141 24 C -0.107 4.107 25 C -0.166 4.166 26 C -0.014 4.014 27 C -0.155 4.155 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.207 0.793 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.185 0.815 39 H 0.225 0.775 40 H 0.194 0.806 41 H 0.181 0.819 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.739 -22.109 10.844 26.865 hybrid contribution 0.438 1.168 -0.620 1.393 sum -10.301 -20.940 10.224 25.478 Atomic orbital electron populations 1.69801 1.06400 1.25725 1.60158 1.25431 0.96252 1.00635 1.04509 0.85320 0.77189 0.79915 0.77991 1.20827 1.22612 1.20585 1.19582 0.91353 0.85366 1.40001 0.90844 1.42639 1.05427 1.00531 1.88425 1.20495 0.94157 0.85396 0.94379 1.21962 0.96391 1.00763 0.97144 1.21553 0.96561 0.97465 0.99051 1.20907 0.84226 0.99390 0.89799 1.46024 1.26864 1.14044 1.48962 1.18073 0.83186 0.82565 0.80667 1.90603 1.69175 1.39790 1.44969 1.21860 0.98234 0.96572 1.04056 1.22988 0.91656 0.97510 0.89638 1.67226 1.07058 1.28008 1.20724 1.24038 0.97058 0.85479 0.91584 1.19326 0.96246 0.98165 1.00378 1.21462 0.99518 0.90202 0.98201 1.21410 0.96307 1.00363 0.96041 1.21527 0.94349 0.97705 0.97110 1.21696 1.02060 0.92818 0.99993 1.19183 0.93779 0.92717 0.95727 1.21718 0.98120 1.00282 0.95374 1.21658 0.95875 0.98916 0.98466 0.94324 0.79286 0.93708 0.93091 0.90529 0.92726 0.90857 0.89617 0.75606 0.81501 0.77510 0.80620 0.81932 0.83523 0.84210 0.92741 0.93352 0.89689 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.73 -35.29 4.28 -322.92 -1.38 -36.67 16 10 C 0.16 6.23 3.10 44.99 0.14 6.37 16 11 C -0.12 -4.01 5.61 30.59 0.17 -3.83 16 12 C -0.11 -3.38 5.23 30.59 0.16 -3.22 16 13 C 0.16 4.83 2.45 44.99 0.11 4.94 16 14 N -0.71 -19.70 5.03 -445.79 -2.24 -21.94 16 15 C 0.57 17.01 7.74 86.67 0.67 17.68 16 16 O -0.56 -19.56 13.40 -4.04 -0.05 -19.61 16 17 C -0.20 -5.40 6.07 -18.59 -0.11 -5.52 16 18 C 0.13 3.00 10.71 84.81 0.91 3.91 16 19 N -0.52 -11.58 10.22 -193.72 -1.98 -13.56 16 20 C 0.19 3.08 11.00 85.31 0.94 4.02 16 21 C -0.14 -2.52 5.74 -21.33 -0.12 -2.64 16 22 C -0.07 -0.82 9.82 22.33 0.22 -0.61 16 23 C -0.12 -1.39 9.94 22.06 0.22 -1.17 16 24 C -0.09 -1.45 9.96 22.10 0.22 -1.23 16 25 C -0.15 -3.59 9.32 22.20 0.21 -3.38 16 26 C -0.01 -0.22 5.91 -19.94 -0.12 -0.34 16 27 C -0.12 -3.90 5.32 30.59 0.16 -3.73 16 28 C -0.11 -3.66 5.61 30.60 0.17 -3.49 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.37 19.54 6.06 -92.71 -0.56 18.98 16 31 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.04 7.60 -2.39 -0.02 2.03 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.60 7.58 -2.39 -0.02 2.58 16 37 H 0.41 9.93 6.71 -92.70 -0.62 9.31 16 38 H 0.17 3.41 6.44 -2.91 -0.02 3.39 16 39 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 41 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.14 4.05 5.24 -2.91 -0.02 4.04 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.87 6.51 -2.39 -0.02 1.85 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.14 377.26 1.73 -70.41 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.17 Total: 39.45 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.25 Total: -7.75 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -5.32 Total: -130.55 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.14 1.73 -70.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026609362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.601 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds